Wall clock time and date at job start Mon Mar 30 2020 05:00:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08998 * 109.99539 * 2 1
4 4 C 1.54323 * 109.87981 * 121.09644 * 2 1 3
5 5 H 1.09002 * 110.72250 * 23.24836 * 4 2 1
6 6 N 1.46897 * 110.72101 * 260.15016 * 4 2 1
7 7 C 1.46892 * 111.00042 * 63.87391 * 6 4 2
8 8 C 1.46903 * 110.99955 * 187.83056 * 6 4 2
9 9 C 1.55158 * 102.93774 * 141.60766 * 4 2 1
10 10 C 1.55124 * 101.48813 * 324.33377 * 9 4 2
11 11 N 1.47022 * 109.87842 * 238.90702 * 2 1 3
12 12 S 1.65596 * 125.65100 * 61.60543 * 11 2 1
13 13 O 1.42093 * 106.40450 * 336.45969 * 12 11 2
14 14 O 1.42105 * 106.40138 * 203.53791 * 12 11 2
15 15 C 1.76202 * 107.21429 * 89.99758 * 12 11 2
16 16 H 1.07998 * 120.00459 * 0.02562 * 15 12 11
17 17 C 1.37882 * 119.99840 * 180.27205 * 15 12 11
18 18 N 1.31518 * 119.99961 * 359.72959 * 17 15 12
19 19 Si 1.86798 * 120.00216 * 179.72332 * 17 15 12
20 20 H 1.48504 * 109.47015 * 0.02562 * 19 17 15
21 21 H 1.48504 * 109.46856 * 119.99951 * 19 17 15
22 22 H 1.48498 * 109.47227 * 240.00462 * 19 17 15
23 23 H 1.09003 * 109.47186 * 179.64092 * 1 2 3
24 24 H 1.09000 * 109.46796 * 299.64174 * 1 2 3
25 25 H 1.09003 * 109.46951 * 59.63796 * 1 2 3
26 26 H 1.08998 * 109.47280 * 59.99675 * 7 6 4
27 27 H 1.08998 * 109.47382 * 180.02562 * 7 6 4
28 28 H 1.08998 * 109.47246 * 299.99878 * 7 6 4
29 29 H 1.08996 * 109.47391 * 65.52385 * 8 6 4
30 30 H 1.08998 * 109.46946 * 185.52590 * 8 6 4
31 31 H 1.09005 * 109.46750 * 305.52157 * 8 6 4
32 32 H 1.09002 * 111.00510 * 82.57518 * 9 4 2
33 33 H 1.09002 * 111.00424 * 206.38143 * 9 4 2
34 34 H 1.09003 * 110.49370 * 278.45091 * 10 9 4
35 35 H 1.09004 * 110.34523 * 156.06399 * 10 9 4
36 36 H 0.97001 * 120.00261 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9028 1.0243 0.0000
4 6 2.0548 -0.7495 1.2427
5 1 1.3051 -1.4460 1.6182
6 7 2.4526 0.1985 2.2920
7 6 1.2967 0.9665 2.7733
8 6 3.1231 -0.4941 3.4005
9 6 3.2876 -1.5143 0.6923
10 6 2.8099 -1.8825 -0.7369
11 7 2.0300 -0.7140 -1.1840
12 16 1.7564 -0.2815 -2.7589
13 8 0.5687 0.4986 -2.7603
14 8 1.9108 -1.4636 -3.5323
15 6 3.0626 0.8002 -3.2370
16 1 3.8397 1.0535 -2.5311
17 6 3.0898 1.3272 -4.5108
18 7 2.1437 1.0184 -5.3706
19 14 4.4703 2.4801 -5.0154
20 1 5.4020 2.6660 -3.8740
21 1 5.2070 1.8966 -6.1652
22 1 3.8997 3.7936 -5.4081
23 1 -0.3634 -1.0277 -0.0064
24 1 -0.3633 0.5083 0.8932
25 1 -0.3633 0.5195 -0.8867
26 1 0.5520 0.2840 3.1828
27 1 1.6193 1.6609 3.5490
28 1 0.8610 1.5248 1.9447
29 1 4.0652 -0.9148 3.0494
30 1 3.3191 0.2139 4.2057
31 1 2.4823 -1.2952 3.7691
32 1 4.1654 -0.8690 0.6603
33 1 3.4856 -2.4107 1.2799
34 1 2.1801 -2.7718 -0.7115
35 1 3.6655 -2.0413 -1.3933
36 1 2.1626 1.3895 -6.2666
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309889135.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:35
Heat of formation + Delta-G solvation = -80.134911 kcal
Electronic energy + Delta-G solvation = -19236.357453 eV
Core-core repulsion = 16268.131339 eV
Total energy + Delta-G solvation = -2968.226114 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 262.114 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.14914 -35.65271 -35.23455 -33.92333 -33.03936 -31.12342 -29.43356 -27.35944
-26.09461 -25.63070 -22.69302 -21.29846 -19.97614 -18.66747 -17.18317 -16.53501
-15.98982 -15.14969 -14.75579 -14.50342 -14.24497 -13.93026 -13.67273 -13.22819
-13.03223 -12.53346 -12.43362 -12.24261 -11.97150 -11.81638 -11.64900 -11.20883
-11.18788 -11.07908 -10.99619 -10.58379 -10.55447 -10.42381 -10.25620 -10.19815
-9.79727 -9.21898 -8.86160 -8.32993 -8.10510 -6.65948 -5.27141 2.27965
3.08256 3.16308 3.24691 3.92923 4.10730 4.56889 4.66225 4.76576
5.10312 5.15626 5.30226 5.33299 5.49370 5.54213 5.61725 5.71136
5.80799 5.82805 5.86561 5.88949 5.95880 6.03561 6.15667 6.21088
6.29335 6.46357 6.56221 6.84266 6.99931 7.09463 7.17191 7.38102
7.55906 8.04838 8.93498 10.27430
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.026264 B = 0.007044 C = 0.006629
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1065.826057 B = 3973.968791 C = 4223.061549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.163 3.837
3 H 0.081 0.919
4 C 0.075 3.925
5 H 0.054 0.946
6 N -0.537 5.537
7 C 0.018 3.982
8 C 0.026 3.974
9 C -0.124 4.124
10 C 0.127 3.873
11 N -1.016 6.016
12 S 2.729 3.271
13 O -0.998 6.998
14 O -1.003 7.003
15 C -1.019 5.019
16 H 0.103 0.897
17 C 0.132 3.868
18 N -0.848 5.848
19 Si 0.919 3.081
20 H -0.262 1.262
21 H -0.271 1.271
22 H -0.271 1.271
23 H 0.051 0.949
24 H 0.057 0.943
25 H 0.096 0.904
26 H 0.024 0.976
27 H 0.066 0.934
28 H 0.077 0.923
29 H 0.070 0.930
30 H 0.065 0.935
31 H 0.023 0.977
32 H 0.085 0.915
33 H 0.071 0.929
34 H 0.057 0.943
35 H 0.076 0.924
36 H 0.290 0.710
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.550 -2.232 14.787 15.035
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.247 4.247
2 C 0.055 3.945
3 H 0.099 0.901
4 C -0.035 4.035
5 H 0.072 0.928
6 N -0.261 5.261
7 C -0.130 4.130
8 C -0.122 4.122
9 C -0.163 4.163
10 C 0.001 3.999
11 N -0.851 5.851
12 S 2.831 3.169
13 O -0.989 6.989
14 O -0.994 6.994
15 C -1.152 5.152
16 H 0.121 0.879
17 C -0.085 4.085
18 N -0.478 5.478
19 Si 0.743 3.257
20 H -0.185 1.185
21 H -0.196 1.196
22 H -0.196 1.196
23 H 0.070 0.930
24 H 0.076 0.924
25 H 0.115 0.885
26 H 0.043 0.957
27 H 0.084 0.916
28 H 0.096 0.904
29 H 0.089 0.911
30 H 0.083 0.917
31 H 0.041 0.959
32 H 0.104 0.896
33 H 0.090 0.910
34 H 0.075 0.925
35 H 0.095 0.905
36 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 1.031 -2.186 13.806 14.016
hybrid contribution 0.657 0.342 0.224 0.774
sum 1.688 -1.844 14.030 14.251
Atomic orbital electron populations
1.22663 0.95582 1.02315 1.04102 1.21014 0.93260 0.96315 0.83866
0.90086 1.22839 0.96540 0.92594 0.91481 0.92801 1.61985 1.27079
1.26125 1.10915 1.22525 0.91876 0.97705 1.00875 1.22369 0.99064
0.97474 0.93327 1.22910 0.98041 0.99532 0.95785 1.21771 0.95099
0.88574 0.94506 1.59180 1.66825 1.36478 1.22601 1.00096 0.74951
0.73770 0.68084 1.93306 1.49065 1.71783 1.84715 1.93357 1.88300
1.51172 1.66541 1.30675 1.30499 1.47487 1.06546 0.87872 1.24759
0.95756 0.93684 0.94300 1.69905 1.31278 1.39677 1.06915 0.86150
0.80802 0.79654 0.79075 1.18540 1.19625 1.19594 0.93018 0.92404
0.88513 0.95750 0.91569 0.90419 0.91139 0.91658 0.95886 0.89614
0.91022 0.92488 0.90521 0.89987
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.25 8.84 37.16 0.33 -2.92 16
2 C 0.16 2.93 2.61 -66.95 -0.18 2.76 16
3 H 0.08 1.53 7.81 -51.93 -0.41 1.13 16
4 C 0.08 1.07 2.18 -65.88 -0.14 0.93 16
5 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16
6 N -0.54 -6.88 4.84 -240.97 -1.17 -8.05 16
7 C 0.02 0.21 8.67 60.06 0.52 0.73 16
8 C 0.03 0.26 9.26 60.07 0.56 0.82 16
9 C -0.12 -1.70 5.41 -24.47 -0.13 -1.83 16
10 C 0.13 2.20 6.99 -2.41 -0.02 2.18 16
11 N -1.02 -21.38 3.40 -104.29 -0.35 -21.73 16
12 S 2.73 74.02 5.18 -107.50 -0.56 73.46 16
13 O -1.00 -28.90 15.17 -57.17 -0.87 -29.76 16
14 O -1.00 -29.90 17.60 -57.17 -1.01 -30.90 16
15 C -1.02 -28.74 9.75 30.60 0.30 -28.44 16
16 H 0.10 2.72 7.81 -52.49 -0.41 2.31 16
17 C 0.13 3.77 5.46 -17.82 -0.10 3.67 16
18 N -0.85 -25.28 13.19 55.43 0.73 -24.54 16
19 Si 0.92 20.97 29.54 -169.99 -5.02 15.95 16
20 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16
21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
24 H 0.06 0.81 6.12 -51.93 -0.32 0.49 16
25 H 0.10 1.99 5.79 -51.93 -0.30 1.69 16
26 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16
27 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16
28 H 0.08 0.94 5.84 -51.93 -0.30 0.64 16
29 H 0.07 0.68 7.33 -51.93 -0.38 0.30 16
30 H 0.06 0.57 8.02 -51.93 -0.42 0.16 16
31 H 0.02 0.22 8.13 -51.93 -0.42 -0.21 16
32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16
33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
36 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16
LS Contribution 299.34 15.07 4.51 4.51
Total: -1.00 -34.36 299.34 -8.05 -42.40
By element:
Atomic # 1 Polarization: 6.25 SS G_CDS: -5.45 Total: 0.79 kcal
Atomic # 6 Polarization: -23.26 SS G_CDS: 1.14 Total: -22.12 kcal
Atomic # 7 Polarization: -53.54 SS G_CDS: -0.79 Total: -54.33 kcal
Atomic # 8 Polarization: -58.79 SS G_CDS: -1.87 Total: -60.67 kcal
Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal
Atomic # 16 Polarization: 74.02 SS G_CDS: -0.56 Total: 73.46 kcal
Total LS contribution 4.51 Total: 4.51 kcal
Total: -34.36 -8.05 -42.40 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309889135.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.733 kcal
(2) G-P(sol) polarization free energy of solvation -34.356 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.089 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.135 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds