Wall clock time and date at job start Mon Mar 30 2020 05:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.99539 * 2 1 4 4 C 1.54323 * 109.87981 * 121.09644 * 2 1 3 5 5 H 1.09002 * 110.72250 * 23.24836 * 4 2 1 6 6 N 1.46897 * 110.72101 * 260.15016 * 4 2 1 7 7 C 1.46892 * 111.00042 * 63.87391 * 6 4 2 8 8 C 1.46903 * 110.99955 * 187.83056 * 6 4 2 9 9 C 1.55158 * 102.93774 * 141.60766 * 4 2 1 10 10 C 1.55124 * 101.48813 * 324.33377 * 9 4 2 11 11 N 1.47022 * 109.87842 * 238.90702 * 2 1 3 12 12 S 1.65596 * 125.65100 * 61.60543 * 11 2 1 13 13 O 1.42093 * 106.40450 * 336.45969 * 12 11 2 14 14 O 1.42105 * 106.40138 * 203.53791 * 12 11 2 15 15 C 1.76202 * 107.21429 * 89.99758 * 12 11 2 16 16 H 1.07998 * 120.00459 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99840 * 180.27205 * 15 12 11 18 18 N 1.31518 * 119.99961 * 359.72959 * 17 15 12 19 19 Si 1.86798 * 120.00216 * 179.72332 * 17 15 12 20 20 H 1.48504 * 109.47015 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46856 * 119.99951 * 19 17 15 22 22 H 1.48498 * 109.47227 * 240.00462 * 19 17 15 23 23 H 1.09003 * 109.47186 * 179.64092 * 1 2 3 24 24 H 1.09000 * 109.46796 * 299.64174 * 1 2 3 25 25 H 1.09003 * 109.46951 * 59.63796 * 1 2 3 26 26 H 1.08998 * 109.47280 * 59.99675 * 7 6 4 27 27 H 1.08998 * 109.47382 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47246 * 299.99878 * 7 6 4 29 29 H 1.08996 * 109.47391 * 65.52385 * 8 6 4 30 30 H 1.08998 * 109.46946 * 185.52590 * 8 6 4 31 31 H 1.09005 * 109.46750 * 305.52157 * 8 6 4 32 32 H 1.09002 * 111.00510 * 82.57518 * 9 4 2 33 33 H 1.09002 * 111.00424 * 206.38143 * 9 4 2 34 34 H 1.09003 * 110.49370 * 278.45091 * 10 9 4 35 35 H 1.09004 * 110.34523 * 156.06399 * 10 9 4 36 36 H 0.97001 * 120.00261 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 1.3051 -1.4460 1.6182 6 7 2.4526 0.1985 2.2920 7 6 1.2967 0.9665 2.7733 8 6 3.1231 -0.4941 3.4005 9 6 3.2876 -1.5143 0.6923 10 6 2.8099 -1.8825 -0.7369 11 7 2.0300 -0.7140 -1.1840 12 16 1.7564 -0.2815 -2.7589 13 8 0.5687 0.4986 -2.7603 14 8 1.9108 -1.4636 -3.5323 15 6 3.0626 0.8002 -3.2370 16 1 3.8397 1.0535 -2.5311 17 6 3.0898 1.3272 -4.5108 18 7 2.1437 1.0184 -5.3706 19 14 4.4703 2.4801 -5.0154 20 1 5.4020 2.6660 -3.8740 21 1 5.2070 1.8966 -6.1652 22 1 3.8997 3.7936 -5.4081 23 1 -0.3634 -1.0277 -0.0064 24 1 -0.3633 0.5083 0.8932 25 1 -0.3633 0.5195 -0.8867 26 1 0.5520 0.2840 3.1828 27 1 1.6193 1.6609 3.5490 28 1 0.8610 1.5248 1.9447 29 1 4.0652 -0.9148 3.0494 30 1 3.3191 0.2139 4.2057 31 1 2.4823 -1.2952 3.7691 32 1 4.1654 -0.8690 0.6603 33 1 3.4856 -2.4107 1.2799 34 1 2.1801 -2.7718 -0.7115 35 1 3.6655 -2.0413 -1.3933 36 1 2.1626 1.3895 -6.2666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309889135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:35 Heat of formation + Delta-G solvation = -80.134911 kcal Electronic energy + Delta-G solvation = -19236.357453 eV Core-core repulsion = 16268.131339 eV Total energy + Delta-G solvation = -2968.226114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14914 -35.65271 -35.23455 -33.92333 -33.03936 -31.12342 -29.43356 -27.35944 -26.09461 -25.63070 -22.69302 -21.29846 -19.97614 -18.66747 -17.18317 -16.53501 -15.98982 -15.14969 -14.75579 -14.50342 -14.24497 -13.93026 -13.67273 -13.22819 -13.03223 -12.53346 -12.43362 -12.24261 -11.97150 -11.81638 -11.64900 -11.20883 -11.18788 -11.07908 -10.99619 -10.58379 -10.55447 -10.42381 -10.25620 -10.19815 -9.79727 -9.21898 -8.86160 -8.32993 -8.10510 -6.65948 -5.27141 2.27965 3.08256 3.16308 3.24691 3.92923 4.10730 4.56889 4.66225 4.76576 5.10312 5.15626 5.30226 5.33299 5.49370 5.54213 5.61725 5.71136 5.80799 5.82805 5.86561 5.88949 5.95880 6.03561 6.15667 6.21088 6.29335 6.46357 6.56221 6.84266 6.99931 7.09463 7.17191 7.38102 7.55906 8.04838 8.93498 10.27430 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.007044 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.826057 B = 3973.968791 C = 4223.061549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.163 3.837 3 H 0.081 0.919 4 C 0.075 3.925 5 H 0.054 0.946 6 N -0.537 5.537 7 C 0.018 3.982 8 C 0.026 3.974 9 C -0.124 4.124 10 C 0.127 3.873 11 N -1.016 6.016 12 S 2.729 3.271 13 O -0.998 6.998 14 O -1.003 7.003 15 C -1.019 5.019 16 H 0.103 0.897 17 C 0.132 3.868 18 N -0.848 5.848 19 Si 0.919 3.081 20 H -0.262 1.262 21 H -0.271 1.271 22 H -0.271 1.271 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 -2.232 14.787 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.055 3.945 3 H 0.099 0.901 4 C -0.035 4.035 5 H 0.072 0.928 6 N -0.261 5.261 7 C -0.130 4.130 8 C -0.122 4.122 9 C -0.163 4.163 10 C 0.001 3.999 11 N -0.851 5.851 12 S 2.831 3.169 13 O -0.989 6.989 14 O -0.994 6.994 15 C -1.152 5.152 16 H 0.121 0.879 17 C -0.085 4.085 18 N -0.478 5.478 19 Si 0.743 3.257 20 H -0.185 1.185 21 H -0.196 1.196 22 H -0.196 1.196 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.115 0.885 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.031 -2.186 13.806 14.016 hybrid contribution 0.657 0.342 0.224 0.774 sum 1.688 -1.844 14.030 14.251 Atomic orbital electron populations 1.22663 0.95582 1.02315 1.04102 1.21014 0.93260 0.96315 0.83866 0.90086 1.22839 0.96540 0.92594 0.91481 0.92801 1.61985 1.27079 1.26125 1.10915 1.22525 0.91876 0.97705 1.00875 1.22369 0.99064 0.97474 0.93327 1.22910 0.98041 0.99532 0.95785 1.21771 0.95099 0.88574 0.94506 1.59180 1.66825 1.36478 1.22601 1.00096 0.74951 0.73770 0.68084 1.93306 1.49065 1.71783 1.84715 1.93357 1.88300 1.51172 1.66541 1.30675 1.30499 1.47487 1.06546 0.87872 1.24759 0.95756 0.93684 0.94300 1.69905 1.31278 1.39677 1.06915 0.86150 0.80802 0.79654 0.79075 1.18540 1.19625 1.19594 0.93018 0.92404 0.88513 0.95750 0.91569 0.90419 0.91139 0.91658 0.95886 0.89614 0.91022 0.92488 0.90521 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 8.84 37.16 0.33 -2.92 16 2 C 0.16 2.93 2.61 -66.95 -0.18 2.76 16 3 H 0.08 1.53 7.81 -51.93 -0.41 1.13 16 4 C 0.08 1.07 2.18 -65.88 -0.14 0.93 16 5 H 0.05 0.73 7.85 -51.93 -0.41 0.32 16 6 N -0.54 -6.88 4.84 -240.97 -1.17 -8.05 16 7 C 0.02 0.21 8.67 60.06 0.52 0.73 16 8 C 0.03 0.26 9.26 60.07 0.56 0.82 16 9 C -0.12 -1.70 5.41 -24.47 -0.13 -1.83 16 10 C 0.13 2.20 6.99 -2.41 -0.02 2.18 16 11 N -1.02 -21.38 3.40 -104.29 -0.35 -21.73 16 12 S 2.73 74.02 5.18 -107.50 -0.56 73.46 16 13 O -1.00 -28.90 15.17 -57.17 -0.87 -29.76 16 14 O -1.00 -29.90 17.60 -57.17 -1.01 -30.90 16 15 C -1.02 -28.74 9.75 30.60 0.30 -28.44 16 16 H 0.10 2.72 7.81 -52.49 -0.41 2.31 16 17 C 0.13 3.77 5.46 -17.82 -0.10 3.67 16 18 N -0.85 -25.28 13.19 55.43 0.73 -24.54 16 19 Si 0.92 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.81 6.12 -51.93 -0.32 0.49 16 25 H 0.10 1.99 5.79 -51.93 -0.30 1.69 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 28 H 0.08 0.94 5.84 -51.93 -0.30 0.64 16 29 H 0.07 0.68 7.33 -51.93 -0.38 0.30 16 30 H 0.06 0.57 8.02 -51.93 -0.42 0.16 16 31 H 0.02 0.22 8.13 -51.93 -0.42 -0.21 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 299.34 15.07 4.51 4.51 Total: -1.00 -34.36 299.34 -8.05 -42.40 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.45 Total: 0.79 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 1.14 Total: -22.12 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.79 Total: -54.33 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -1.87 Total: -60.67 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 74.02 SS G_CDS: -0.56 Total: 73.46 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.36 -8.05 -42.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309889135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.733 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds