Wall clock time and date at job start Mon Mar 30 2020 05:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.99539 * 2 1 4 4 C 1.54323 * 109.87981 * 121.09644 * 2 1 3 5 5 H 1.09002 * 110.72250 * 23.24836 * 4 2 1 6 6 N 1.46897 * 110.72101 * 260.15016 * 4 2 1 7 7 C 1.46892 * 111.00042 * 63.87391 * 6 4 2 8 8 C 1.46903 * 110.99955 * 187.83056 * 6 4 2 9 9 C 1.55158 * 102.93774 * 141.60766 * 4 2 1 10 10 C 1.55124 * 101.48813 * 324.33377 * 9 4 2 11 11 N 1.47022 * 109.87842 * 238.90702 * 2 1 3 12 12 S 1.65596 * 125.65100 * 61.60543 * 11 2 1 13 13 O 1.42093 * 106.40450 * 336.45969 * 12 11 2 14 14 O 1.42105 * 106.40138 * 203.53791 * 12 11 2 15 15 C 1.76202 * 107.21429 * 89.99758 * 12 11 2 16 16 H 1.07998 * 120.00459 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99840 * 180.27205 * 15 12 11 18 18 N 1.31518 * 119.99961 * 359.72959 * 17 15 12 19 19 Si 1.86798 * 120.00216 * 179.72332 * 17 15 12 20 20 H 1.48504 * 109.47015 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46856 * 119.99951 * 19 17 15 22 22 H 1.48498 * 109.47227 * 240.00462 * 19 17 15 23 23 H 1.09003 * 109.47186 * 179.64092 * 1 2 3 24 24 H 1.09000 * 109.46796 * 299.64174 * 1 2 3 25 25 H 1.09003 * 109.46951 * 59.63796 * 1 2 3 26 26 H 1.08998 * 109.47280 * 59.99675 * 7 6 4 27 27 H 1.08998 * 109.47382 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47246 * 299.99878 * 7 6 4 29 29 H 1.08996 * 109.47391 * 65.52385 * 8 6 4 30 30 H 1.08998 * 109.46946 * 185.52590 * 8 6 4 31 31 H 1.09005 * 109.46750 * 305.52157 * 8 6 4 32 32 H 1.09002 * 111.00510 * 82.57518 * 9 4 2 33 33 H 1.09002 * 111.00424 * 206.38143 * 9 4 2 34 34 H 1.09003 * 110.49370 * 278.45091 * 10 9 4 35 35 H 1.09004 * 110.34523 * 156.06399 * 10 9 4 36 36 H 0.97001 * 120.00261 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 1.3051 -1.4460 1.6182 6 7 2.4526 0.1985 2.2920 7 6 1.2967 0.9665 2.7733 8 6 3.1231 -0.4941 3.4005 9 6 3.2876 -1.5143 0.6923 10 6 2.8099 -1.8825 -0.7369 11 7 2.0300 -0.7140 -1.1840 12 16 1.7564 -0.2815 -2.7589 13 8 0.5687 0.4986 -2.7603 14 8 1.9108 -1.4636 -3.5323 15 6 3.0626 0.8002 -3.2370 16 1 3.8397 1.0535 -2.5311 17 6 3.0898 1.3272 -4.5108 18 7 2.1437 1.0184 -5.3706 19 14 4.4703 2.4801 -5.0154 20 1 5.4020 2.6660 -3.8740 21 1 5.2070 1.8966 -6.1652 22 1 3.8997 3.7936 -5.4081 23 1 -0.3634 -1.0277 -0.0064 24 1 -0.3633 0.5083 0.8932 25 1 -0.3633 0.5195 -0.8867 26 1 0.5520 0.2840 3.1828 27 1 1.6193 1.6609 3.5490 28 1 0.8610 1.5248 1.9447 29 1 4.0652 -0.9148 3.0494 30 1 3.3191 0.2139 4.2057 31 1 2.4823 -1.2952 3.7691 32 1 4.1654 -0.8690 0.6603 33 1 3.4856 -2.4107 1.2799 34 1 2.1801 -2.7718 -0.7115 35 1 3.6655 -2.0413 -1.3933 36 1 2.1626 1.3895 -6.2666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309889135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:35 Heat of formation + Delta-G solvation = -108.133853 kcal Electronic energy + Delta-G solvation = -19237.571578 eV Core-core repulsion = 16268.131339 eV Total energy + Delta-G solvation = -2969.440239 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37606 -37.44752 -36.80484 -36.14866 -35.18959 -32.44505 -30.79817 -28.27290 -28.20742 -26.87670 -23.79215 -22.74757 -21.15602 -20.71106 -18.99039 -18.34087 -17.53997 -16.97960 -16.13729 -15.96404 -15.63711 -15.51680 -15.08278 -14.61473 -14.45079 -14.07413 -13.83835 -13.61053 -13.31489 -13.15847 -13.07636 -13.03807 -12.70442 -12.49239 -12.37752 -12.30330 -12.24514 -12.11339 -11.96440 -11.74597 -11.36754 -11.27262 -10.95666 -9.77741 -9.23572 -8.76156 -7.50264 0.27373 1.30922 1.31501 1.49980 2.19342 2.54945 2.78020 3.09334 3.52343 3.69237 3.78435 4.15094 4.29330 4.32654 4.36197 4.41057 4.51568 4.56837 4.63628 4.72729 4.75021 4.80552 4.90503 4.97409 5.07842 5.13424 5.16098 5.19884 5.28349 5.37866 5.51904 5.86641 5.90496 6.15671 6.19541 6.76196 8.19069 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.007044 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.826057 B = 3973.968791 C = 4223.061549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.153 3.847 3 H 0.065 0.935 4 C 0.087 3.913 5 H 0.069 0.931 6 N -0.553 5.553 7 C 0.016 3.984 8 C 0.026 3.974 9 C -0.109 4.109 10 C 0.112 3.888 11 N -1.019 6.019 12 S 2.734 3.266 13 O -1.029 7.029 14 O -1.042 7.042 15 C -1.043 5.043 16 H 0.114 0.886 17 C 0.070 3.930 18 N -0.895 5.895 19 Si 0.989 3.011 20 H -0.249 1.249 21 H -0.256 1.256 22 H -0.257 1.257 23 H 0.058 0.942 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -2.101 17.097 17.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.047 3.953 3 H 0.083 0.917 4 C -0.023 4.023 5 H 0.087 0.913 6 N -0.278 5.278 7 C -0.132 4.132 8 C -0.122 4.122 9 C -0.148 4.148 10 C -0.014 4.014 11 N -0.857 5.857 12 S 2.837 3.163 13 O -1.020 7.020 14 O -1.032 7.032 15 C -1.176 5.176 16 H 0.132 0.868 17 C -0.143 4.143 18 N -0.526 5.526 19 Si 0.807 3.193 20 H -0.172 1.172 21 H -0.180 1.180 22 H -0.181 1.181 23 H 0.077 0.923 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.528 -2.067 16.128 16.455 hybrid contribution 0.148 0.270 -0.398 0.503 sum 2.676 -1.797 15.730 16.057 Atomic orbital electron populations 1.22608 0.95356 1.02618 1.03811 1.21269 0.93617 0.95925 0.84515 0.91705 1.22674 0.96848 0.92448 0.90290 0.91300 1.61947 1.27807 1.26263 1.11806 1.22557 0.91852 0.98017 1.00740 1.22440 0.99071 0.98026 0.92658 1.22878 0.97462 1.01027 0.93457 1.22148 0.94785 0.87746 0.96692 1.58659 1.67541 1.37956 1.21575 0.99512 0.74535 0.72987 0.69247 1.93266 1.50369 1.72364 1.85959 1.93293 1.88642 1.52279 1.68985 1.31036 1.31177 1.47925 1.07444 0.86805 1.26034 0.98668 0.95425 0.94153 1.69988 1.33517 1.41285 1.07843 0.85122 0.77256 0.77485 0.79435 1.17200 1.18023 1.18092 0.92300 0.89097 0.92429 0.94550 0.89885 0.91995 0.90665 0.90306 0.94770 0.89908 0.87095 0.91156 0.91353 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.39 8.84 71.98 0.64 -5.76 16 2 C 0.15 5.46 2.61 45.34 0.12 5.58 16 3 H 0.06 2.49 7.81 -2.39 -0.02 2.47 16 4 C 0.09 2.27 2.18 46.10 0.10 2.37 16 5 H 0.07 1.61 7.85 -2.39 -0.02 1.59 16 6 N -0.55 -12.52 4.84 -916.28 -4.44 -16.96 16 7 C 0.02 0.32 8.67 127.69 1.11 1.43 16 8 C 0.03 0.41 9.26 127.69 1.18 1.59 16 9 C -0.11 -2.70 5.41 32.06 0.17 -2.53 16 10 C 0.11 3.76 6.99 86.93 0.61 4.37 16 11 N -1.02 -43.34 3.40 -483.86 -1.64 -44.98 16 12 S 2.73 153.67 5.18 -56.49 -0.29 153.38 16 13 O -1.03 -62.44 15.17 -128.00 -1.94 -64.38 16 14 O -1.04 -64.54 17.60 -128.00 -2.25 -66.79 16 15 C -1.04 -60.05 9.75 67.74 0.66 -59.39 16 16 H 0.11 6.06 7.81 -2.91 -0.02 6.04 16 17 C 0.07 4.01 5.46 84.66 0.46 4.47 16 18 N -0.89 -54.72 13.19 21.45 0.28 -54.44 16 19 Si 0.99 42.54 29.54 68.60 2.03 44.56 16 20 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.09 2.45 6.12 -2.39 -0.01 2.44 16 25 H 0.06 2.46 5.79 -2.39 -0.01 2.44 16 26 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 1.35 8.06 -2.39 -0.02 1.33 16 28 H 0.06 1.41 5.84 -2.39 -0.01 1.39 16 29 H 0.07 1.14 7.33 -2.39 -0.02 1.12 16 30 H 0.08 1.07 8.02 -2.39 -0.02 1.05 16 31 H 0.03 0.49 8.13 -2.38 -0.02 0.47 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.30 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -77.06 299.34 -2.16 -79.21 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 1.06 Total: 18.27 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 5.05 Total: -47.87 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -5.80 Total: -116.38 kcal Atomic # 8 Polarization: -126.98 SS G_CDS: -4.20 Total: -131.18 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 153.67 SS G_CDS: -0.29 Total: 153.38 kcal Total: -77.06 -2.16 -79.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309889135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.922 kcal (2) G-P(sol) polarization free energy of solvation -77.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds