Wall clock time and date at job start Mon Mar 30 2020 05:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.00020 * 2 1 4 4 C 1.54318 * 109.88309 * 238.90198 * 2 1 3 5 5 H 1.09000 * 110.87381 * 144.34259 * 4 2 1 6 6 N 1.46904 * 110.72250 * 21.13740 * 4 2 1 7 7 C 1.46905 * 110.99574 * 76.12744 * 6 4 2 8 8 C 1.46895 * 111.00433 * 200.08078 * 6 4 2 9 9 C 1.55157 * 102.94346 * 262.77493 * 4 2 1 10 10 C 1.54908 * 101.58287 * 324.49915 * 9 4 2 11 11 N 1.47026 * 109.88338 * 121.09375 * 2 1 3 12 12 S 1.65600 * 125.64531 * 300.51267 * 11 2 1 13 13 O 1.42098 * 106.40290 * 23.52327 * 12 11 2 14 14 O 1.42104 * 106.40212 * 156.44080 * 12 11 2 15 15 C 1.76197 * 107.21960 * 269.97877 * 12 11 2 16 16 H 1.08004 * 119.99760 * 0.02562 * 15 12 11 17 17 C 1.37877 * 120.00078 * 180.02562 * 15 12 11 18 18 N 1.31508 * 119.99997 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 119.99690 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47421 * 90.00295 * 19 17 15 21 21 H 1.48507 * 109.46662 * 209.99724 * 19 17 15 22 22 H 1.48501 * 109.47456 * 329.99674 * 19 17 15 23 23 H 1.08999 * 109.47638 * 187.79291 * 1 2 3 24 24 H 1.08999 * 109.47372 * 307.79733 * 1 2 3 25 25 H 1.09005 * 109.47313 * 67.79005 * 1 2 3 26 26 H 1.08995 * 109.47049 * 183.91771 * 7 6 4 27 27 H 1.08999 * 109.47067 * 63.91870 * 7 6 4 28 28 H 1.09001 * 109.47185 * 303.91348 * 7 6 4 29 29 H 1.09001 * 109.46863 * 298.91058 * 8 6 4 30 30 H 1.08999 * 109.46861 * 58.90526 * 8 6 4 31 31 H 1.08996 * 109.47319 * 178.91088 * 8 6 4 32 32 H 1.09007 * 111.00124 * 82.57399 * 9 4 2 33 33 H 1.08998 * 111.00854 * 206.41809 * 9 4 2 34 34 H 1.09003 * 110.36627 * 155.84264 * 10 9 4 35 35 H 1.08996 * 110.36354 * 278.05935 * 10 9 4 36 36 H 0.97008 * 120.00222 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2426 5 1 2.9651 -0.2844 -1.6210 6 7 1.0264 -0.8029 -2.2903 7 6 0.9028 0.4920 -2.9730 8 6 1.3076 -1.8790 -3.2498 9 6 2.3518 -2.1695 -0.6923 10 6 2.8567 -1.8498 0.7369 11 7 2.0300 -0.7140 1.1840 12 16 1.7157 -0.3099 2.7588 13 8 0.5055 0.4348 2.7482 14 8 1.8911 -1.4968 3.5203 15 6 2.9805 0.8033 3.2741 16 1 3.7619 1.0889 2.5854 17 6 2.9728 1.3097 4.5565 18 7 2.0216 0.9614 5.3952 19 14 4.3134 2.4904 5.1024 20 1 3.8917 3.8851 4.8153 21 1 4.5468 2.3341 6.5607 22 1 5.5673 2.1907 4.3655 23 1 -0.3634 -1.0181 0.1393 24 1 -0.3634 0.6298 0.8120 25 1 -0.3634 0.3885 -0.9514 26 1 0.0881 0.4455 -3.6955 27 1 1.8346 0.7204 -3.4903 28 1 0.6940 1.2709 -2.2396 29 1 2.2668 -1.6934 -3.7331 30 1 1.3440 -2.8335 -2.7248 31 1 0.5208 -1.9086 -4.0035 32 1 1.4451 -2.7737 -0.6603 33 1 3.1269 -2.6619 -1.2795 34 1 2.7086 -2.7080 1.3924 35 1 3.9095 -1.5686 0.7131 36 1 2.0160 1.3180 6.2974 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309889137.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:41 Heat of formation + Delta-G solvation = -100.904144 kcal Electronic energy + Delta-G solvation = -19254.240510 eV Core-core repulsion = 16285.113775 eV Total energy + Delta-G solvation = -2969.126736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.45004 -37.42485 -36.77412 -36.12290 -35.18583 -32.23916 -30.75705 -28.27212 -28.22740 -26.80230 -24.01697 -22.90936 -20.91084 -20.43301 -18.97434 -18.36137 -17.36380 -17.01336 -16.24842 -15.96463 -15.77488 -15.51098 -15.34548 -14.77278 -14.08206 -13.87364 -13.72913 -13.45242 -13.25144 -13.12378 -13.05028 -13.02522 -12.77480 -12.47730 -12.35457 -12.31463 -12.21030 -12.04409 -11.87142 -11.67136 -11.33961 -11.26572 -10.95043 -9.75926 -9.18149 -8.75628 -7.50454 0.29053 1.31358 1.32404 1.48502 2.19075 2.55469 2.81380 3.09521 3.51881 3.74505 3.80036 4.18065 4.29299 4.36725 4.41685 4.45376 4.55167 4.61391 4.70885 4.76517 4.82488 4.86236 4.92085 5.01767 5.10323 5.14852 5.21303 5.24311 5.28780 5.46736 5.61801 5.89069 5.91414 6.16627 6.22070 6.75861 8.19350 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.006468 C = 0.006317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.533582 B = 4328.293920 C = 4431.505941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.152 3.848 3 H 0.060 0.940 4 C 0.086 3.914 5 H 0.071 0.929 6 N -0.548 5.548 7 C 0.018 3.982 8 C 0.023 3.977 9 C -0.110 4.110 10 C 0.107 3.893 11 N -1.019 6.019 12 S 2.733 3.267 13 O -1.029 7.029 14 O -1.043 7.043 15 C -1.044 5.044 16 H 0.115 0.885 17 C 0.069 3.931 18 N -0.894 5.894 19 Si 0.991 3.009 20 H -0.253 1.253 21 H -0.260 1.260 22 H -0.248 1.248 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.184 -2.263 -17.276 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.045 3.955 3 H 0.078 0.922 4 C -0.024 4.024 5 H 0.089 0.911 6 N -0.272 5.272 7 C -0.130 4.130 8 C -0.124 4.124 9 C -0.149 4.149 10 C -0.019 4.019 11 N -0.858 5.858 12 S 2.836 3.164 13 O -1.019 7.019 14 O -1.034 7.034 15 C -1.177 5.177 16 H 0.133 0.867 17 C -0.144 4.144 18 N -0.526 5.526 19 Si 0.809 3.191 20 H -0.177 1.177 21 H -0.185 1.185 22 H -0.171 1.171 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.114 0.886 26 H 0.101 0.899 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.869 -2.699 -16.305 16.632 hybrid contribution 1.515 1.037 0.409 1.881 sum 3.384 -1.663 -15.896 16.337 Atomic orbital electron populations 1.22203 0.94783 1.01607 1.02778 1.21277 0.94826 0.94832 0.84553 0.92165 1.22614 0.92883 0.96323 0.90544 0.91145 1.61985 1.45713 1.06244 1.13280 1.22522 1.01349 0.90459 0.98647 1.22466 1.00367 0.94531 0.95039 1.22893 1.02532 0.95926 0.93551 1.22137 0.94956 0.88081 0.96676 1.58679 1.65155 1.40401 1.21542 0.99521 0.74382 0.73123 0.69330 1.93284 1.48801 1.73845 1.85993 1.93284 1.88440 1.52066 1.69576 1.31018 1.31858 1.47284 1.07532 0.86657 1.26053 0.98136 0.95795 0.94417 1.69990 1.33002 1.41259 1.08344 0.85129 0.77703 0.77839 0.78476 1.17728 1.18454 1.17143 0.93716 0.93959 0.88558 0.89850 0.94668 0.91865 0.94764 0.90730 0.90398 0.90089 0.86941 0.91559 0.90709 0.89065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.72 8.25 71.98 0.59 -5.12 16 2 C 0.15 5.39 3.21 45.34 0.15 5.53 16 3 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.09 2.20 2.58 46.10 0.12 2.32 16 5 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 6 N -0.55 -11.80 3.56 -916.26 -3.26 -15.06 16 7 C 0.02 0.33 8.68 127.69 1.11 1.44 16 8 C 0.02 0.37 9.15 127.69 1.17 1.54 16 9 C -0.11 -2.67 5.00 31.99 0.16 -2.51 16 10 C 0.11 3.59 7.10 86.85 0.62 4.21 16 11 N -1.02 -43.33 3.41 -484.30 -1.65 -44.98 16 12 S 2.73 154.02 5.18 -56.49 -0.29 153.73 16 13 O -1.03 -62.97 15.17 -128.00 -1.94 -64.91 16 14 O -1.04 -64.98 17.34 -128.00 -2.22 -67.20 16 15 C -1.04 -59.60 9.74 67.73 0.66 -58.94 16 16 H 0.12 5.98 7.81 -2.91 -0.02 5.96 16 17 C 0.07 3.92 5.46 84.66 0.46 4.38 16 18 N -0.89 -54.72 13.19 21.45 0.28 -54.44 16 19 Si 0.99 42.13 29.54 68.60 2.03 44.15 16 20 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 23 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.04 1.86 6.09 -2.39 -0.01 1.85 16 25 H 0.10 2.90 5.25 -2.38 -0.01 2.89 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 1.31 6.51 -2.39 -0.02 1.29 16 29 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 1.14 6.47 -2.39 -0.02 1.12 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 2.02 7.63 -2.38 -0.02 2.00 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.37 7.78 -2.39 -0.02 2.35 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.30 16.37 8.31 -92.70 -0.77 15.60 16 Total: -1.00 -77.32 296.93 -0.96 -78.29 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.06 Total: 17.57 kcal Atomic # 6 Polarization: -52.19 SS G_CDS: 5.03 Total: -47.15 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -4.63 Total: -114.48 kcal Atomic # 8 Polarization: -127.94 SS G_CDS: -4.16 Total: -132.10 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: 154.02 SS G_CDS: -0.29 Total: 153.73 kcal Total: -77.32 -0.96 -78.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309889137.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.618 kcal (2) G-P(sol) polarization free energy of solvation -77.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds