Wall clock time and date at job start Mon Mar 30 2020 04:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50691 * 120.00077 * 2 1 4 4 N 1.46504 * 109.47409 * 124.99643 * 3 2 1 5 5 C 1.34773 * 120.00072 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99842 * 0.02562 * 5 4 3 7 7 N 1.34772 * 119.99935 * 179.97438 * 5 4 3 8 8 C 1.40027 * 120.00047 * 175.63623 * 7 5 4 9 9 C 1.38715 * 120.10076 * 34.57553 * 8 7 5 10 10 C 1.38197 * 119.99787 * 179.97438 * 9 8 7 11 11 C 1.38341 * 120.20174 * 0.02562 * 10 9 8 12 12 C 1.38160 * 120.20328 * 359.97438 * 11 10 9 13 13 C 1.38740 * 119.99840 * 0.02562 * 12 11 10 14 14 O 1.35789 * 120.10340 * 180.02562 * 13 12 11 15 15 C 1.34811 * 116.99533 * 354.55227 * 14 13 12 16 16 H 1.07998 * 120.00197 * 5.04597 * 15 14 13 17 17 C 1.38638 * 119.99997 * 185.05152 * 15 14 13 18 18 N 1.31575 * 119.99791 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00074 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47473 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47259 * 119.99900 * 19 17 15 22 22 H 1.48502 * 109.47046 * 239.99677 * 19 17 15 23 23 H 1.08001 * 119.99913 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.99969 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99848 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47383 * 4.99515 * 3 2 1 27 27 H 1.09000 * 109.47297 * 244.99714 * 3 2 1 28 28 H 0.97001 * 119.99801 * 0.02562 * 4 3 2 29 29 H 0.96999 * 120.00384 * 355.64191 * 7 5 4 30 30 H 1.07999 * 119.99971 * 0.25722 * 9 8 7 31 31 H 1.08004 * 119.89994 * 179.97438 * 10 9 8 32 32 H 1.08000 * 119.89987 * 179.97438 * 11 10 9 33 33 H 1.08006 * 120.00381 * 180.02562 * 12 11 10 34 34 H 0.96994 * 120.00197 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7790 2.4086 1.3329 6 8 3.7150 3.3579 0.5757 7 7 4.6344 2.4335 2.3741 8 6 5.5146 3.5111 2.5314 9 6 5.1204 4.7902 2.1672 10 6 5.9907 5.8523 2.3239 11 6 7.2560 5.6444 2.8431 12 6 7.6572 4.3739 3.2086 13 6 6.7903 3.3016 3.0549 14 8 7.1823 2.0521 3.4139 15 6 8.4630 1.9017 3.8069 16 1 9.1031 2.7662 3.9040 17 6 8.9585 0.6374 4.0864 18 7 8.1788 -0.4157 3.9675 19 14 10.7329 0.4292 4.6316 20 1 11.3934 1.7580 4.6857 21 1 10.7668 -0.1961 5.9781 22 1 11.4493 -0.4402 3.6640 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6214 1.4025 -0.9313 28 1 3.0451 0.5744 1.7352 29 1 4.6404 1.7050 3.0144 30 1 4.1319 4.9568 1.7654 31 1 5.6823 6.8475 2.0394 32 1 7.9323 6.4779 2.9631 33 1 8.6457 4.2154 3.6140 34 1 8.5255 -1.3003 4.1626 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000327665691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:04 Heat of formation + Delta-G solvation = -3.503410 kcal Electronic energy + Delta-G solvation = -18909.942872 eV Core-core repulsion = 15809.595797 eV Total energy + Delta-G solvation = -3100.347074 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12031 -38.69230 -36.48453 -35.66066 -34.02693 -32.64204 -32.26708 -29.20773 -28.47420 -25.87973 -25.34119 -22.24287 -21.32583 -20.57856 -20.02306 -18.09306 -17.84054 -17.44510 -16.26172 -15.57392 -15.25502 -14.72889 -14.51888 -14.10739 -14.03467 -13.78264 -13.49156 -13.19967 -13.05544 -12.60727 -12.31254 -11.71295 -11.43873 -11.29082 -11.09677 -10.95354 -10.75021 -10.46472 -9.98199 -9.72967 -9.64151 -9.25104 -8.89002 -8.84534 -7.68701 -6.96633 -6.48489 -4.05393 1.89233 2.16646 2.39779 3.10746 3.12807 3.15625 3.17958 3.60143 3.94011 4.62277 4.64441 4.66082 4.94962 5.04152 5.23350 5.46585 5.66512 5.68195 5.76673 5.86848 6.08588 6.29535 6.34499 6.41808 6.48358 6.66387 6.82606 6.86553 7.11470 7.20246 7.33180 7.43107 7.46717 7.86933 7.97139 8.37214 8.94818 8.99186 9.65696 10.69933 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.005582 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.251230 B = 5015.173720 C = 6545.340867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.171 4.171 3 C 0.167 3.833 4 N -0.745 5.745 5 C 0.703 3.297 6 O -0.587 6.587 7 N -0.665 5.665 8 C 0.085 3.915 9 C -0.077 4.077 10 C -0.195 4.195 11 C -0.087 4.087 12 C -0.222 4.222 13 C 0.134 3.866 14 O -0.182 6.182 15 C -0.387 4.387 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.866 5.866 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.277 1.277 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.399 0.601 29 H 0.410 0.590 30 H 0.132 0.868 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 1.542 -3.284 10.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C 0.043 3.957 4 N -0.402 5.402 5 C 0.404 3.596 6 O -0.466 6.466 7 N -0.311 5.311 8 C -0.010 4.010 9 C -0.097 4.097 10 C -0.215 4.215 11 C -0.106 4.106 12 C -0.242 4.242 13 C 0.080 3.920 14 O -0.086 6.086 15 C -0.464 4.464 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.502 5.502 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.120 0.880 24 H 0.118 0.882 25 H 0.134 0.866 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.233 0.767 29 H 0.245 0.755 30 H 0.150 0.850 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.148 0.852 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.659 1.904 -3.961 10.612 hybrid contribution 1.049 -0.940 0.810 1.625 sum -8.610 0.964 -3.151 9.219 Atomic orbital electron populations 1.23937 0.95739 1.02231 0.99031 1.23077 0.96212 0.98418 1.01200 1.20202 0.91115 0.95032 0.89347 1.45044 1.43135 1.19561 1.32413 1.15888 0.79292 0.83079 0.81321 1.90868 1.71579 1.35710 1.48424 1.42189 1.37333 1.24315 1.27309 1.16674 0.88233 0.86973 1.09099 1.20852 1.00185 0.89872 0.98805 1.20546 0.95134 0.97937 1.07884 1.20775 0.95801 0.95997 0.98030 1.20979 1.01416 0.92197 1.09586 1.19142 0.91090 0.86874 0.94935 1.83900 1.29797 1.22190 1.72699 1.21345 0.84882 0.94441 1.45708 0.89019 1.25238 0.99994 0.94146 0.97084 1.70025 1.35814 0.98604 1.45765 0.85647 0.80523 0.78897 0.78380 1.19102 1.20211 1.20230 0.88022 0.88229 0.86610 0.91335 0.90835 0.76718 0.75504 0.85017 0.87297 0.87381 0.85202 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 14.32 29.01 0.42 -0.97 16 2 C -0.17 -1.61 9.63 -36.03 -0.35 -1.96 16 3 C 0.17 2.04 6.11 -5.20 -0.03 2.01 16 4 N -0.75 -10.70 5.55 -66.42 -0.37 -11.07 16 5 C 0.70 13.20 8.41 -86.93 -0.73 12.47 16 6 O -0.59 -12.60 13.76 5.28 0.07 -12.53 16 7 N -0.66 -13.18 5.20 -14.09 -0.07 -13.26 16 8 C 0.08 1.87 6.33 -83.47 -0.53 1.35 16 9 C -0.08 -1.58 8.69 -39.42 -0.34 -1.92 16 10 C -0.20 -3.68 10.04 -39.56 -0.40 -4.08 16 11 C -0.09 -1.66 10.04 -39.57 -0.40 -2.05 16 12 C -0.22 -4.86 9.16 -39.42 -0.36 -5.22 16 13 C 0.13 3.23 6.67 -38.93 -0.26 2.97 16 14 O -0.18 -4.94 9.32 -0.02 0.00 -4.94 16 15 C -0.39 -10.54 9.49 30.88 0.29 -10.24 16 16 H 0.09 2.33 5.21 -52.49 -0.27 2.06 16 17 C 0.04 1.04 5.49 -17.51 -0.10 0.94 16 18 N -0.87 -24.42 13.67 55.48 0.76 -23.66 16 19 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 24 H 0.10 0.76 7.84 -52.48 -0.41 0.35 16 25 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 26 H 0.07 0.84 7.79 -51.93 -0.40 0.44 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.40 4.91 8.48 -40.82 -0.35 4.56 16 29 H 0.41 7.68 8.58 -40.82 -0.35 7.33 16 30 H 0.13 2.69 6.20 -52.49 -0.33 2.36 16 31 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.13 2.81 5.64 -52.48 -0.30 2.51 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 301.17 15.07 4.54 4.54 Total: -1.00 -31.68 301.17 -6.54 -38.21 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -3.66 Total: 14.23 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.78 Total: -6.70 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.32 Total: -47.98 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.07 Total: -17.47 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.68 -6.54 -38.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000327665691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.708 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds