Wall clock time and date at job start Mon Mar 30 2020 04:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50691 * 120.00077 * 2 1 4 4 N 1.46504 * 109.47409 * 124.99643 * 3 2 1 5 5 C 1.34773 * 120.00072 * 179.97438 * 4 3 2 6 6 O 1.21594 * 119.99842 * 0.02562 * 5 4 3 7 7 N 1.34772 * 119.99935 * 179.97438 * 5 4 3 8 8 C 1.40027 * 120.00047 * 175.63623 * 7 5 4 9 9 C 1.38715 * 120.10076 * 34.57553 * 8 7 5 10 10 C 1.38197 * 119.99787 * 179.97438 * 9 8 7 11 11 C 1.38341 * 120.20174 * 0.02562 * 10 9 8 12 12 C 1.38160 * 120.20328 * 359.97438 * 11 10 9 13 13 C 1.38740 * 119.99840 * 0.02562 * 12 11 10 14 14 O 1.35789 * 120.10340 * 180.02562 * 13 12 11 15 15 C 1.34811 * 116.99533 * 354.55227 * 14 13 12 16 16 H 1.07998 * 120.00197 * 5.04597 * 15 14 13 17 17 C 1.38638 * 119.99997 * 185.05152 * 15 14 13 18 18 N 1.31575 * 119.99791 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00074 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47473 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47259 * 119.99900 * 19 17 15 22 22 H 1.48502 * 109.47046 * 239.99677 * 19 17 15 23 23 H 1.08001 * 119.99913 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.99969 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99848 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47383 * 4.99515 * 3 2 1 27 27 H 1.09000 * 109.47297 * 244.99714 * 3 2 1 28 28 H 0.97001 * 119.99801 * 0.02562 * 4 3 2 29 29 H 0.96999 * 120.00384 * 355.64191 * 7 5 4 30 30 H 1.07999 * 119.99971 * 0.25722 * 9 8 7 31 31 H 1.08004 * 119.89994 * 179.97438 * 10 9 8 32 32 H 1.08000 * 119.89987 * 179.97438 * 11 10 9 33 33 H 1.08006 * 120.00381 * 180.02562 * 12 11 10 34 34 H 0.96994 * 120.00197 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 3.7790 2.4086 1.3329 6 8 3.7150 3.3579 0.5757 7 7 4.6344 2.4335 2.3741 8 6 5.5146 3.5111 2.5314 9 6 5.1204 4.7902 2.1672 10 6 5.9907 5.8523 2.3239 11 6 7.2560 5.6444 2.8431 12 6 7.6572 4.3739 3.2086 13 6 6.7903 3.3016 3.0549 14 8 7.1823 2.0521 3.4139 15 6 8.4630 1.9017 3.8069 16 1 9.1031 2.7662 3.9040 17 6 8.9585 0.6374 4.0864 18 7 8.1788 -0.4157 3.9675 19 14 10.7329 0.4292 4.6316 20 1 11.3934 1.7580 4.6857 21 1 10.7668 -0.1961 5.9781 22 1 11.4493 -0.4402 3.6640 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6214 1.4025 -0.9313 28 1 3.0451 0.5744 1.7352 29 1 4.6404 1.7050 3.0144 30 1 4.1319 4.9568 1.7654 31 1 5.6823 6.8475 2.0394 32 1 7.9323 6.4779 2.9631 33 1 8.6457 4.2154 3.6140 34 1 8.5255 -1.3003 4.1626 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000327665691.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:04 Heat of formation + Delta-G solvation = -25.199451 kcal Electronic energy + Delta-G solvation = -18910.883683 eV Core-core repulsion = 15809.595797 eV Total energy + Delta-G solvation = -3101.287885 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68138 -40.34891 -38.14672 -36.83437 -35.61696 -34.23144 -33.68382 -30.83850 -30.08609 -27.35315 -26.90720 -23.85256 -22.97169 -21.90997 -21.05195 -19.85987 -19.45059 -18.96462 -17.80275 -16.85531 -16.61892 -16.35064 -16.16759 -15.60865 -15.50118 -15.36642 -15.04662 -14.71963 -14.33797 -14.10347 -13.56432 -13.38329 -13.12206 -12.74855 -12.59944 -12.35193 -12.09646 -12.03839 -11.53039 -11.36757 -10.99597 -10.78167 -10.57760 -10.09231 -9.34626 -8.67316 -8.44978 -6.09643 0.51791 0.71638 1.10460 1.38125 1.45038 1.54800 1.84095 2.11071 2.18801 2.88101 3.15888 3.28314 3.45794 3.85187 4.16400 4.19193 4.30203 4.51111 4.57311 4.66125 4.71019 4.85522 4.98925 5.12007 5.14198 5.36778 5.44486 5.53454 5.64643 5.73812 5.77323 5.79857 5.95885 6.04786 6.25972 6.94798 7.00955 7.46135 7.77623 8.77470 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.005582 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.251230 B = 5015.173720 C = 6545.340867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.186 4.186 3 C 0.166 3.834 4 N -0.730 5.730 5 C 0.699 3.301 6 O -0.616 6.616 7 N -0.668 5.668 8 C 0.075 3.925 9 C -0.087 4.087 10 C -0.176 4.176 11 C -0.083 4.083 12 C -0.229 4.229 13 C 0.097 3.903 14 O -0.220 6.220 15 C -0.410 4.410 16 H 0.101 0.899 17 C -0.018 4.018 18 N -0.915 5.915 19 Si 1.014 2.986 20 H -0.253 1.253 21 H -0.269 1.269 22 H -0.273 1.273 23 H 0.123 0.877 24 H 0.105 0.895 25 H 0.123 0.877 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.409 0.591 29 H 0.411 0.589 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 2.742 -3.464 10.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.205 4.205 3 C 0.043 3.957 4 N -0.386 5.386 5 C 0.400 3.600 6 O -0.497 6.497 7 N -0.315 5.315 8 C -0.020 4.020 9 C -0.107 4.107 10 C -0.195 4.195 11 C -0.101 4.101 12 C -0.249 4.249 13 C 0.045 3.955 14 O -0.126 6.126 15 C -0.486 4.486 16 H 0.118 0.882 17 C -0.215 4.215 18 N -0.553 5.553 19 Si 0.834 3.166 20 H -0.177 1.177 21 H -0.194 1.194 22 H -0.198 1.198 23 H 0.141 0.859 24 H 0.123 0.877 25 H 0.141 0.859 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.245 0.755 29 H 0.246 0.754 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.850 3.114 -4.151 11.133 hybrid contribution 0.885 -1.124 0.772 1.625 sum -8.966 1.990 -3.379 9.786 Atomic orbital electron populations 1.24179 0.95172 1.03505 0.96023 1.22918 0.96616 0.97111 1.03821 1.20335 0.90650 0.96904 0.87857 1.45062 1.42168 1.18494 1.32872 1.16060 0.79423 0.83744 0.80761 1.90827 1.72585 1.37060 1.49224 1.42227 1.37338 1.24088 1.27843 1.16991 0.88112 0.88238 1.08632 1.21059 1.00846 0.89817 0.99004 1.21052 0.94334 0.99089 1.05037 1.21173 0.96531 0.95837 0.96594 1.21195 1.01089 0.93085 1.09503 1.19591 0.92393 0.86783 0.96692 1.83870 1.30023 1.23915 1.74811 1.21812 0.85459 0.95226 1.46107 0.88210 1.26417 1.04639 0.93519 0.96975 1.70152 1.38105 0.99185 1.47883 0.84581 0.74659 0.79340 0.78015 1.17655 1.19402 1.19801 0.85931 0.87710 0.85909 0.91329 0.92041 0.75483 0.75365 0.84840 0.83384 0.83279 0.85441 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 14.32 67.77 0.97 -1.12 16 2 C -0.19 -3.28 9.63 25.64 0.25 -3.03 16 3 C 0.17 4.00 6.11 85.63 0.52 4.53 16 4 N -0.73 -21.11 5.55 -482.30 -2.68 -23.78 16 5 C 0.70 26.69 8.41 179.06 1.51 28.20 16 6 O -0.62 -26.65 13.76 -4.01 -0.06 -26.70 16 7 N -0.67 -27.32 5.20 -316.76 -1.65 -28.97 16 8 C 0.08 3.38 6.33 38.25 0.24 3.62 16 9 C -0.09 -3.48 8.69 22.37 0.19 -3.29 16 10 C -0.18 -6.09 10.04 22.28 0.22 -5.87 16 11 C -0.08 -2.91 10.04 22.28 0.22 -2.69 16 12 C -0.23 -9.93 9.16 22.37 0.21 -9.72 16 13 C 0.10 4.80 6.67 22.69 0.15 4.95 16 14 O -0.22 -12.46 9.32 -22.98 -0.21 -12.68 16 15 C -0.41 -22.95 9.49 67.92 0.64 -22.31 16 16 H 0.10 5.18 5.21 -2.91 -0.02 5.16 16 17 C -0.02 -0.96 5.49 84.83 0.47 -0.50 16 18 N -0.91 -53.37 13.67 21.61 0.30 -53.07 16 19 Si 1.01 41.73 29.55 68.60 2.03 43.76 16 20 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 21 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 23 H 0.12 1.24 8.06 -2.91 -0.02 1.21 16 24 H 0.10 1.35 7.84 -2.91 -0.02 1.33 16 25 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 26 H 0.07 1.65 7.79 -2.39 -0.02 1.64 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.41 10.13 8.48 -92.71 -0.79 9.34 16 29 H 0.41 16.21 8.58 -92.71 -0.80 15.41 16 30 H 0.13 5.33 6.20 -2.91 -0.02 5.31 16 31 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 33 H 0.13 5.49 5.64 -2.91 -0.02 5.48 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -70.45 301.17 2.89 -67.56 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: -0.44 Total: 41.12 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.60 Total: -7.24 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.03 Total: -105.83 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.27 Total: -39.38 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -70.45 2.89 -67.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000327665691.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.364 kcal (2) G-P(sol) polarization free energy of solvation -70.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds