Wall clock time and date at job start Mon Mar 30 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 119.99780 * 2 1 4 4 N 1.34777 * 120.00035 * 179.97438 * 2 1 3 5 5 C 1.39953 * 119.99950 * 185.54322 * 4 2 1 6 6 C 1.39009 * 119.99706 * 144.63607 * 5 4 2 7 7 C 1.38221 * 120.23729 * 180.02562 * 6 5 4 8 8 C 1.37997 * 120.23097 * 359.97438 * 7 6 5 9 9 C 1.39649 * 119.98788 * 0.02562 * 8 7 6 10 10 C 1.47745 * 120.11459 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99804 * 144.18503 * 10 9 8 12 12 N 1.34775 * 119.99987 * 324.17436 * 10 9 8 13 13 C 1.46503 * 119.99946 * 4.66289 * 12 10 9 14 14 C 1.36874 * 119.99892 * 184.65991 * 12 10 9 15 15 H 1.07992 * 119.99959 * 359.32117 * 14 12 10 16 16 C 1.39044 * 119.99796 * 179.32064 * 14 12 10 17 17 N 1.31368 * 120.00054 * 34.00818 * 16 14 12 18 18 Si 1.86803 * 120.00017 * 214.00096 * 16 14 12 19 19 H 1.48497 * 109.47086 * 95.00159 * 18 16 14 20 20 H 1.48501 * 109.46942 * 215.00031 * 18 16 14 21 21 H 1.48502 * 109.46958 * 335.00000 * 18 16 14 22 22 C 1.38571 * 119.99662 * 324.66132 * 5 4 2 23 23 H 1.08997 * 109.47423 * 270.00634 * 1 2 3 24 24 H 1.09005 * 109.46997 * 30.00878 * 1 2 3 25 25 H 1.08997 * 109.46912 * 150.00072 * 1 2 3 26 26 H 0.97002 * 119.99713 * 5.55144 * 4 2 1 27 27 H 1.08002 * 119.87930 * 359.97438 * 6 5 4 28 28 H 1.08005 * 119.88573 * 180.02562 * 7 6 5 29 29 H 1.08004 * 120.00590 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.47257 * 91.45035 * 13 12 10 31 31 H 1.09003 * 109.46642 * 211.44593 * 13 12 10 32 32 H 1.09003 * 109.47072 * 331.44472 * 13 12 10 33 33 H 0.96998 * 120.00107 * 179.97438 * 17 16 14 34 34 H 1.08003 * 120.11385 * 359.69426 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5755 -1.1700 0.1176 6 6 4.2118 -2.1853 0.8223 7 6 5.5888 -2.1926 0.9415 8 6 6.3418 -1.1923 0.3613 9 6 5.7124 -0.1676 -0.3488 10 6 6.5159 0.9045 -0.9716 11 8 6.1748 1.3783 -2.0382 12 7 7.6267 1.3575 -0.3574 13 6 8.0944 0.7187 0.8753 14 6 8.3179 2.4145 -0.8853 15 1 7.9793 2.8783 -1.7998 16 6 9.4559 2.8908 -0.2439 17 7 10.2480 2.0585 0.3929 18 14 9.8586 4.7144 -0.2880 19 1 9.3273 5.3684 0.9348 20 1 11.3315 4.8948 -0.3456 21 1 9.2372 5.3296 -1.4883 22 6 4.3220 -0.1603 -0.4685 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6993 -2.0053 -0.0804 27 1 3.6279 -2.9708 1.2790 28 1 6.0773 -2.9845 1.4899 29 1 7.4175 -1.2013 0.4570 30 1 8.8016 -0.0732 0.6284 31 1 8.5851 1.4605 1.5054 32 1 7.2445 0.2934 1.4091 33 1 11.0421 2.3908 0.8400 34 1 3.8297 0.6270 -1.0203 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334341482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:08 Heat of formation + Delta-G solvation = -15.618999 kcal Electronic energy + Delta-G solvation = -19310.338916 eV Core-core repulsion = 16209.466470 eV Total energy + Delta-G solvation = -3100.872446 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38581 -38.96779 -37.33924 -34.74330 -34.60707 -31.90882 -30.79767 -30.47990 -28.48669 -26.29957 -24.99875 -22.85773 -22.40223 -20.36164 -19.57276 -17.34575 -16.98613 -16.88941 -15.96215 -15.43764 -15.41149 -14.56999 -14.54194 -14.07959 -13.87155 -13.51078 -13.24070 -12.87860 -12.68257 -12.55970 -12.14953 -11.98154 -11.75767 -11.42718 -11.16851 -11.10341 -10.64463 -10.37458 -10.27405 -9.98620 -9.69704 -8.85723 -8.55716 -8.27459 -7.94940 -7.81641 -6.54700 -3.72028 1.41590 1.71507 2.60732 3.08683 3.15591 3.26777 3.33354 3.76033 4.10397 4.41058 4.63065 4.83691 4.99295 5.08952 5.16868 5.21747 5.28964 5.57378 5.59863 5.72267 5.88520 5.90715 6.24488 6.39206 6.51870 6.65347 6.74179 6.78211 6.99709 7.12754 7.34474 7.41011 7.50446 8.07536 8.14500 8.44527 9.15229 9.39099 10.01000 10.50873 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.005309 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.100607 B = 5272.575313 C = 5944.910507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.502 3.498 3 O -0.517 6.517 4 N -0.674 5.674 5 C 0.124 3.876 6 C -0.146 4.146 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.073 4.073 10 C 0.463 3.537 11 O -0.592 6.592 12 N -0.426 5.426 13 C 0.088 3.912 14 C -0.316 4.316 15 H 0.111 0.889 16 C 0.040 3.960 17 N -0.848 5.848 18 Si 0.911 3.089 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.265 1.265 22 C -0.079 4.079 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.408 0.592 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.271 0.729 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.617 -10.358 5.064 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.290 3.710 3 O -0.391 6.391 4 N -0.320 5.320 5 C 0.031 3.969 6 C -0.167 4.167 7 C -0.131 4.131 8 C -0.140 4.140 9 C -0.077 4.077 10 C 0.253 3.747 11 O -0.479 6.479 12 N -0.142 5.142 13 C -0.056 4.056 14 C -0.442 4.442 15 H 0.129 0.871 16 C -0.166 4.166 17 N -0.485 5.485 18 Si 0.737 3.263 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.100 4.100 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.099 0.901 26 H 0.243 0.757 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.157 0.843 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.179 -9.304 4.671 16.795 hybrid contribution 0.151 0.226 0.200 0.338 sum -13.027 -9.078 4.871 16.609 Atomic orbital electron populations 1.21869 0.91008 1.05073 1.04863 1.21014 0.90795 0.83415 0.75812 1.90821 1.70219 1.31195 1.46867 1.43531 1.05412 1.09646 1.73382 1.17594 0.82207 0.97667 0.99423 1.20819 0.95163 0.99621 1.01097 1.20808 0.93008 0.98658 1.00591 1.21886 1.01352 0.93681 0.97079 1.20183 0.93624 0.96253 0.97664 1.17694 0.83990 0.86131 0.86840 1.90600 1.72554 1.61944 1.22772 1.43600 1.21039 1.28348 1.21177 1.22168 0.96984 0.98845 0.87582 1.19755 1.07762 1.06144 1.10581 0.87140 1.25236 0.94662 0.99959 0.96761 1.70221 1.11006 1.34326 1.32969 0.86153 0.77238 0.83578 0.79340 1.20162 1.21024 1.18964 1.21281 0.92389 0.98598 0.97738 0.88678 0.88588 0.90120 0.75695 0.86239 0.85713 0.84276 0.92901 0.89897 0.93548 0.91866 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.31 36.01 0.37 -0.88 16 2 C 0.50 6.65 7.79 -10.98 -0.09 6.57 16 3 O -0.52 -9.89 14.53 5.55 0.08 -9.81 16 4 N -0.67 -8.03 5.33 -9.89 -0.05 -8.09 16 5 C 0.12 1.97 6.29 -83.74 -0.53 1.44 16 6 C -0.15 -1.97 9.96 -39.30 -0.39 -2.36 16 7 C -0.11 -1.61 10.02 -39.68 -0.40 -2.01 16 8 C -0.12 -2.19 7.44 -39.14 -0.29 -2.49 16 9 C -0.07 -1.61 5.35 -104.99 -0.56 -2.18 16 10 C 0.46 12.55 7.34 -12.38 -0.09 12.46 16 11 O -0.59 -18.11 16.42 5.28 0.09 -18.02 16 12 N -0.43 -11.55 3.02 -123.31 -0.37 -11.93 16 13 C 0.09 2.02 7.34 59.85 0.44 2.46 16 14 C -0.32 -9.12 9.40 -15.00 -0.14 -9.26 16 15 H 0.11 3.39 7.35 -52.49 -0.39 3.00 16 16 C 0.04 1.06 4.80 -17.45 -0.08 0.98 16 17 N -0.85 -22.33 10.88 55.50 0.60 -21.72 16 18 Si 0.91 20.75 29.66 -169.99 -5.04 15.71 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.08 -1.63 8.26 -38.96 -0.32 -1.95 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.41 3.00 8.82 -40.82 -0.36 2.64 16 27 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.14 2.50 5.11 -52.48 -0.27 2.23 16 30 H 0.05 1.19 7.21 -51.93 -0.37 0.82 16 31 H 0.08 2.01 6.06 -51.93 -0.31 1.70 16 32 H 0.05 0.94 5.17 -51.93 -0.27 0.67 16 33 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.14 3.33 6.18 -52.48 -0.32 3.00 16 LS Contribution 290.22 15.07 4.37 4.37 Total: -1.00 -35.71 290.22 -5.95 -41.66 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -3.54 Total: 5.04 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.08 Total: 2.79 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: 0.18 Total: -41.74 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: 0.17 Total: -27.83 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.04 Total: 15.71 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.71 -5.95 -41.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334341482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.038 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds