Wall clock time and date at job start Mon Mar 30 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21285 * 119.99780 * 2 1 4 4 N 1.34777 * 120.00035 * 179.97438 * 2 1 3 5 5 C 1.39953 * 119.99950 * 185.54322 * 4 2 1 6 6 C 1.39009 * 119.99706 * 144.63607 * 5 4 2 7 7 C 1.38221 * 120.23729 * 180.02562 * 6 5 4 8 8 C 1.37997 * 120.23097 * 359.97438 * 7 6 5 9 9 C 1.39649 * 119.98788 * 0.02562 * 8 7 6 10 10 C 1.47745 * 120.11459 * 180.02562 * 9 8 7 11 11 O 1.21592 * 119.99804 * 144.18503 * 10 9 8 12 12 N 1.34775 * 119.99987 * 324.17436 * 10 9 8 13 13 C 1.46503 * 119.99946 * 4.66289 * 12 10 9 14 14 C 1.36874 * 119.99892 * 184.65991 * 12 10 9 15 15 H 1.07992 * 119.99959 * 359.32117 * 14 12 10 16 16 C 1.39044 * 119.99796 * 179.32064 * 14 12 10 17 17 N 1.31368 * 120.00054 * 34.00818 * 16 14 12 18 18 Si 1.86803 * 120.00017 * 214.00096 * 16 14 12 19 19 H 1.48497 * 109.47086 * 95.00159 * 18 16 14 20 20 H 1.48501 * 109.46942 * 215.00031 * 18 16 14 21 21 H 1.48502 * 109.46958 * 335.00000 * 18 16 14 22 22 C 1.38571 * 119.99662 * 324.66132 * 5 4 2 23 23 H 1.08997 * 109.47423 * 270.00634 * 1 2 3 24 24 H 1.09005 * 109.46997 * 30.00878 * 1 2 3 25 25 H 1.08997 * 109.46912 * 150.00072 * 1 2 3 26 26 H 0.97002 * 119.99713 * 5.55144 * 4 2 1 27 27 H 1.08002 * 119.87930 * 359.97438 * 6 5 4 28 28 H 1.08005 * 119.88573 * 180.02562 * 7 6 5 29 29 H 1.08004 * 120.00590 * 179.97438 * 8 7 6 30 30 H 1.08999 * 109.47257 * 91.45035 * 13 12 10 31 31 H 1.09003 * 109.46642 * 211.44593 * 13 12 10 32 32 H 1.09003 * 109.47072 * 331.44472 * 13 12 10 33 33 H 0.96998 * 120.00107 * 179.97438 * 17 16 14 34 34 H 1.08003 * 120.11385 * 359.69426 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5755 -1.1700 0.1176 6 6 4.2118 -2.1853 0.8223 7 6 5.5888 -2.1926 0.9415 8 6 6.3418 -1.1923 0.3613 9 6 5.7124 -0.1676 -0.3488 10 6 6.5159 0.9045 -0.9716 11 8 6.1748 1.3783 -2.0382 12 7 7.6267 1.3575 -0.3574 13 6 8.0944 0.7187 0.8753 14 6 8.3179 2.4145 -0.8853 15 1 7.9793 2.8783 -1.7998 16 6 9.4559 2.8908 -0.2439 17 7 10.2480 2.0585 0.3929 18 14 9.8586 4.7144 -0.2880 19 1 9.3273 5.3684 0.9348 20 1 11.3315 4.8948 -0.3456 21 1 9.2372 5.3296 -1.4883 22 6 4.3220 -0.1603 -0.4685 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6993 -2.0053 -0.0804 27 1 3.6279 -2.9708 1.2790 28 1 6.0773 -2.9845 1.4899 29 1 7.4175 -1.2013 0.4570 30 1 8.8016 -0.0732 0.6284 31 1 8.5851 1.4605 1.5054 32 1 7.2445 0.2934 1.4091 33 1 11.0421 2.3908 0.8400 34 1 3.8297 0.6270 -1.0203 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334341482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:08 Heat of formation + Delta-G solvation = -42.800249 kcal Electronic energy + Delta-G solvation = -19311.517583 eV Core-core repulsion = 16209.466470 eV Total energy + Delta-G solvation = -3102.051113 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.64801 -40.62985 -38.88796 -36.85602 -35.86242 -33.91185 -31.96253 -31.84434 -29.61598 -28.15062 -26.94962 -24.40118 -23.71477 -21.49420 -21.26643 -19.18076 -18.70987 -18.02765 -17.39041 -17.14758 -16.60128 -16.38339 -16.15496 -15.95862 -15.23861 -14.95773 -14.58982 -14.38096 -14.03334 -13.71085 -13.65628 -13.37299 -13.33166 -13.03327 -12.81875 -12.58539 -12.42220 -12.17480 -12.13603 -11.39328 -10.94142 -10.87315 -10.48305 -9.99774 -9.83126 -9.13833 -8.61290 -5.90746 0.03643 0.35833 1.30383 1.37384 1.49663 1.56481 2.00655 2.10574 2.22278 2.75703 2.90980 3.11317 3.79289 3.89901 4.03704 4.18296 4.30422 4.44785 4.54608 4.57965 4.62255 4.67353 4.88158 4.95384 5.10382 5.18771 5.28975 5.37871 5.38230 5.45277 5.56021 5.94801 6.04794 6.36512 6.47027 7.04203 7.19696 7.32162 7.94342 8.44226 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.005309 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.100607 B = 5272.575313 C = 5944.910507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.493 3.507 3 O -0.587 6.587 4 N -0.656 5.656 5 C 0.128 3.872 6 C -0.115 4.115 7 C -0.093 4.093 8 C -0.126 4.126 9 C -0.108 4.108 10 C 0.446 3.554 11 O -0.650 6.650 12 N -0.438 5.438 13 C 0.099 3.901 14 C -0.373 4.373 15 H 0.072 0.928 16 C 0.019 3.981 17 N -0.855 5.855 18 Si 0.978 3.022 19 H -0.265 1.265 20 H -0.262 1.262 21 H -0.279 1.279 22 C -0.108 4.108 23 H 0.119 0.881 24 H 0.089 0.911 25 H 0.120 0.880 26 H 0.434 0.566 27 H 0.179 0.821 28 H 0.176 0.824 29 H 0.138 0.862 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.284 0.716 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 -13.413 7.836 21.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.283 3.717 3 O -0.466 6.466 4 N -0.304 5.304 5 C 0.033 3.967 6 C -0.135 4.135 7 C -0.111 4.111 8 C -0.146 4.146 9 C -0.112 4.112 10 C 0.237 3.763 11 O -0.541 6.541 12 N -0.153 5.153 13 C -0.043 4.043 14 C -0.499 4.499 15 H 0.090 0.910 16 C -0.188 4.188 17 N -0.491 5.491 18 Si 0.801 3.199 19 H -0.190 1.190 20 H -0.187 1.187 21 H -0.204 1.204 22 C -0.129 4.129 23 H 0.137 0.863 24 H 0.108 0.892 25 H 0.138 0.862 26 H 0.275 0.725 27 H 0.196 0.804 28 H 0.193 0.807 29 H 0.155 0.845 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.435 -12.442 7.484 20.474 hybrid contribution 0.471 1.039 -0.634 1.305 sum -13.964 -11.404 6.850 19.286 Atomic orbital electron populations 1.21906 0.85919 1.06746 1.06859 1.22205 0.93138 0.82511 0.73808 1.90819 1.72026 1.33797 1.49964 1.43490 1.03850 1.10837 1.72267 1.17728 0.83939 0.96625 0.98368 1.21436 0.95206 0.98902 0.97986 1.21349 0.93363 0.97796 0.98633 1.21908 1.01632 0.93858 0.97189 1.19846 0.93791 0.96695 1.00874 1.18687 0.84234 0.86877 0.86463 1.90514 1.73950 1.64245 1.25439 1.43812 1.21171 1.28175 1.22105 1.22164 0.97942 0.98158 0.86013 1.19572 1.10003 1.08797 1.11563 0.91001 1.25950 0.93502 1.03701 0.95608 1.70207 1.10957 1.35782 1.32108 0.85193 0.77923 0.77825 0.79000 1.18963 1.18694 1.20359 1.21065 0.92297 0.99896 0.99686 0.86253 0.89177 0.86183 0.72486 0.80355 0.80701 0.84487 0.92533 0.91292 0.90758 0.90612 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.31 71.24 0.73 -1.12 16 2 C 0.49 12.61 7.79 87.66 0.68 13.30 16 3 O -0.59 -23.74 14.53 -3.05 -0.04 -23.78 16 4 N -0.66 -13.85 5.33 -303.60 -1.62 -15.47 16 5 C 0.13 3.80 6.29 38.11 0.24 4.04 16 6 C -0.12 -2.47 9.96 22.45 0.22 -2.25 16 7 C -0.09 -2.23 10.02 22.21 0.22 -2.01 16 8 C -0.13 -4.47 7.44 22.55 0.17 -4.30 16 9 C -0.11 -5.02 5.35 -20.10 -0.11 -5.13 16 10 C 0.45 26.24 7.34 86.76 0.64 26.87 16 11 O -0.65 -44.10 16.42 -4.01 -0.07 -44.17 16 12 N -0.44 -25.36 3.02 -662.30 -2.00 -27.36 16 13 C 0.10 4.72 7.34 127.77 0.94 5.66 16 14 C -0.37 -23.10 9.40 84.10 0.79 -22.31 16 15 H 0.07 4.88 7.35 -2.91 -0.02 4.86 16 16 C 0.02 1.04 4.80 84.96 0.41 1.44 16 17 N -0.86 -45.27 10.88 21.68 0.24 -45.03 16 18 Si 0.98 43.58 29.66 68.60 2.04 45.61 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 C -0.11 -4.68 8.26 22.67 0.19 -4.49 16 23 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.43 4.27 8.82 -92.71 -0.82 3.46 16 27 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 28 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.14 4.82 5.11 -2.91 -0.01 4.81 16 30 H 0.06 2.59 7.21 -2.39 -0.02 2.57 16 31 H 0.07 3.41 6.06 -2.39 -0.01 3.40 16 32 H 0.07 3.05 5.17 -2.39 -0.01 3.04 16 33 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 34 H 0.10 5.13 6.18 -2.91 -0.02 5.11 16 Total: -1.00 -90.24 290.22 3.99 -86.25 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.33 Total: 14.25 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.12 Total: 9.71 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -3.38 Total: -87.87 kcal Atomic # 8 Polarization: -67.84 SS G_CDS: -0.11 Total: -67.95 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.04 Total: 45.61 kcal Total: -90.24 3.99 -86.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334341482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.445 kcal (2) G-P(sol) polarization free energy of solvation -90.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds