Wall clock time and date at job start Mon Mar 30 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87160 * 2 1 4 4 C 1.54315 * 109.88156 * 238.98260 * 2 1 3 5 5 C 1.55156 * 102.94436 * 218.38969 * 4 2 1 6 6 C 1.54906 * 101.61451 * 35.48113 * 5 4 2 7 7 N 1.47017 * 109.88216 * 121.17092 * 2 1 3 8 8 S 1.65600 * 125.65122 * 298.41508 * 7 2 1 9 9 O 1.42104 * 106.40136 * 203.53477 * 8 7 2 10 10 O 1.42090 * 106.40326 * 336.45949 * 8 7 2 11 11 N 1.65604 * 107.21808 * 90.00167 * 8 7 2 12 12 C 1.46501 * 120.00465 * 64.99886 * 11 8 7 13 13 C 1.52995 * 109.47237 * 165.00360 * 12 11 8 14 14 C 1.50704 * 109.47181 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99841 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00297 * 179.97438 * 16 14 13 18 18 Si 1.86810 * 119.99996 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46904 * 90.00145 * 18 16 14 20 20 H 1.48497 * 109.46823 * 210.00106 * 18 16 14 21 21 H 1.48495 * 109.46882 * 330.00032 * 18 16 14 22 22 H 1.08997 * 109.47146 * 179.56326 * 1 2 3 23 23 H 1.09004 * 109.47076 * 299.56717 * 1 2 3 24 24 H 1.08996 * 109.47125 * 59.56165 * 1 2 3 25 25 H 1.09001 * 110.72062 * 100.02571 * 4 2 1 26 26 H 1.09005 * 110.72207 * 336.75541 * 4 2 1 27 27 H 1.09002 * 111.00677 * 153.57697 * 5 4 2 28 28 H 1.09002 * 111.00564 * 277.38955 * 5 4 2 29 29 H 1.09008 * 110.36753 * 81.85112 * 6 5 4 30 30 H 1.09001 * 110.37094 * 204.16995 * 6 5 4 31 31 H 0.97000 * 119.99677 * 244.99946 * 11 8 7 32 32 H 1.09002 * 109.46707 * 285.00085 * 12 11 8 33 33 H 1.08996 * 109.46755 * 44.99592 * 12 11 8 34 34 H 1.09002 * 109.47048 * 299.99516 * 13 12 11 35 35 H 1.08998 * 109.47143 * 59.99831 * 13 12 11 36 36 H 0.97001 * 120.00620 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5133 -0.6945 6 6 2.8156 -1.8804 0.7345 7 7 2.0300 -0.7156 1.1829 8 16 1.7561 -0.2855 2.7585 9 8 2.8113 -0.8568 3.5197 10 8 1.4688 1.1061 2.7504 11 7 0.3667 -1.0471 3.2401 12 6 0.3232 -2.5092 3.3213 13 6 -0.9038 -2.9389 4.1279 14 6 -0.9482 -4.4429 4.2120 15 1 -0.1785 -5.0333 3.7372 16 6 -1.9714 -5.0653 4.8950 17 7 -2.0105 -6.3778 4.9679 18 14 -3.3025 -4.0442 5.7169 19 1 -4.4140 -3.8164 4.7588 20 1 -3.8159 -4.7669 6.9081 21 1 -2.7354 -2.7376 6.1369 22 1 -0.3633 -1.0276 -0.0078 23 1 -0.3633 0.5071 0.8939 24 1 -0.3633 0.5206 -0.8860 25 1 2.3529 -0.0432 -2.0201 26 1 1.3051 -1.4437 -1.6202 27 1 3.4852 -2.4093 -1.2829 28 1 4.1656 -0.8681 -0.6622 29 1 2.1900 -2.7727 0.7099 30 1 3.6731 -2.0353 1.3893 31 1 -0.4183 -0.5251 3.4684 32 1 0.2621 -2.9272 2.3165 33 1 1.2261 -2.8728 3.8117 34 1 -0.8426 -2.5209 5.1328 35 1 -1.8067 -2.5752 3.6374 36 1 -2.7302 -6.8157 5.4488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351473616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:04 Heat of formation + Delta-G solvation = -89.582541 kcal Electronic energy + Delta-G solvation = -18715.140888 eV Core-core repulsion = 15746.505094 eV Total energy + Delta-G solvation = -2968.635794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.79546 -37.06913 -35.65126 -35.51120 -32.69664 -31.45497 -31.00095 -29.67882 -25.79246 -24.55832 -22.06394 -21.33344 -20.82641 -18.99448 -17.97078 -17.06247 -16.79727 -16.39601 -15.39220 -14.39220 -14.27656 -14.20684 -13.96723 -13.66469 -13.58296 -13.13257 -12.65846 -12.55456 -12.12846 -11.97914 -11.87519 -11.84253 -11.61998 -11.53717 -11.33858 -11.23568 -10.91536 -10.85415 -10.49867 -10.07567 -9.90935 -9.35942 -9.11360 -8.95837 -8.61872 -6.12663 -4.12591 0.77608 3.06795 3.25282 3.33835 3.36616 3.75839 4.25337 4.37792 4.39174 4.71709 4.78669 5.07202 5.20061 5.21234 5.27994 5.41354 5.54296 5.61267 5.68881 5.71387 5.74429 5.87904 5.99381 6.06937 6.14392 6.17082 6.29214 6.43850 6.54415 7.12143 7.22417 7.33976 7.68184 8.41226 8.90165 9.48336 11.00236 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.005626 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.021831 B = 4976.076125 C = 5218.659997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.149 3.851 3 H 0.077 0.923 4 C -0.124 4.124 5 C -0.129 4.129 6 C 0.113 3.887 7 N -1.016 6.016 8 S 2.801 3.199 9 O -0.977 6.977 10 O -0.987 6.987 11 N -1.126 6.126 12 C 0.131 3.869 13 C -0.017 4.017 14 C -0.524 4.524 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.265 1.265 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.412 0.588 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.018 0.982 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 11.899 -12.750 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.043 3.957 3 H 0.095 0.905 4 C -0.163 4.163 5 C -0.168 4.168 6 C -0.012 4.012 7 N -0.856 5.856 8 S 2.810 3.190 9 O -0.961 6.961 10 O -0.971 6.971 11 N -0.888 5.888 12 C 0.006 3.994 13 C -0.056 4.056 14 C -0.563 4.563 15 H 0.093 0.907 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.190 1.190 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.246 0.754 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.043 0.957 35 H 0.036 0.964 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.615 12.228 -12.085 18.803 hybrid contribution -1.478 0.292 0.383 1.555 sum 6.137 12.520 -11.702 18.203 Atomic orbital electron populations 1.22349 0.95063 1.03193 1.02786 1.21269 0.93903 0.95866 0.84667 0.90488 1.22709 0.97853 0.99420 0.96338 1.22749 0.97887 1.00749 0.95387 1.22087 0.95196 0.88033 0.95894 1.59136 1.65378 1.38627 1.22453 1.01291 0.73441 0.72495 0.71812 1.93602 1.55078 1.79628 1.67749 1.93574 1.85535 1.31275 1.86766 1.55964 1.31767 1.17477 1.83566 1.21361 1.02023 0.75488 1.00500 1.19751 0.92476 0.97919 0.95485 1.20955 1.11386 0.89081 1.34866 0.90653 1.24984 0.97750 0.94803 0.95663 1.69896 1.33122 1.08159 1.42557 0.86779 0.82204 0.80888 0.79408 1.20252 1.21255 1.18980 0.91263 0.92266 0.91115 0.90399 0.90309 0.89960 0.90784 0.91079 0.89940 0.75449 0.92550 0.91077 0.95741 0.96368 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 9.17 37.16 0.34 -1.50 16 2 C 0.15 1.60 3.45 -66.96 -0.23 1.36 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 4 C -0.12 -1.01 6.48 -24.90 -0.16 -1.17 16 5 C -0.13 -1.07 7.08 -24.58 -0.17 -1.25 16 6 C 0.11 1.28 7.11 -2.50 -0.02 1.26 16 7 N -1.02 -13.13 3.46 -104.39 -0.36 -13.49 16 8 S 2.80 44.98 5.96 -107.50 -0.64 44.33 16 9 O -0.98 -18.68 16.93 -57.17 -0.97 -19.64 16 10 O -0.99 -17.34 17.54 -57.17 -1.00 -18.34 16 11 N -1.13 -18.28 6.05 -10.62 -0.06 -18.34 16 12 C 0.13 2.49 6.19 -4.04 -0.03 2.46 16 13 C -0.02 -0.39 4.18 -27.88 -0.12 -0.51 16 14 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 15 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 18 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.06 0.69 7.76 -51.93 -0.40 0.28 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.08 0.96 7.78 -51.93 -0.40 0.56 16 31 H 0.41 6.09 8.65 -34.47 -0.30 5.79 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.41 7.75 -51.93 -0.40 1.01 16 34 H 0.02 0.57 7.20 -51.93 -0.37 0.19 16 35 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -33.25 306.91 -8.77 -42.02 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.65 Total: 0.78 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.82 Total: -12.17 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.35 Total: -58.11 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -1.97 Total: -37.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: 44.98 SS G_CDS: -0.64 Total: 44.33 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.25 -8.77 -42.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351473616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.564 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds