Wall clock time and date at job start Mon Mar 30 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.87160 * 2 1 4 4 C 1.54315 * 109.88156 * 238.98260 * 2 1 3 5 5 C 1.55156 * 102.94436 * 218.38969 * 4 2 1 6 6 C 1.54906 * 101.61451 * 35.48113 * 5 4 2 7 7 N 1.47017 * 109.88216 * 121.17092 * 2 1 3 8 8 S 1.65600 * 125.65122 * 298.41508 * 7 2 1 9 9 O 1.42104 * 106.40136 * 203.53477 * 8 7 2 10 10 O 1.42090 * 106.40326 * 336.45949 * 8 7 2 11 11 N 1.65604 * 107.21808 * 90.00167 * 8 7 2 12 12 C 1.46501 * 120.00465 * 64.99886 * 11 8 7 13 13 C 1.52995 * 109.47237 * 165.00360 * 12 11 8 14 14 C 1.50704 * 109.47181 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99841 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00297 * 179.97438 * 16 14 13 18 18 Si 1.86810 * 119.99996 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46904 * 90.00145 * 18 16 14 20 20 H 1.48497 * 109.46823 * 210.00106 * 18 16 14 21 21 H 1.48495 * 109.46882 * 330.00032 * 18 16 14 22 22 H 1.08997 * 109.47146 * 179.56326 * 1 2 3 23 23 H 1.09004 * 109.47076 * 299.56717 * 1 2 3 24 24 H 1.08996 * 109.47125 * 59.56165 * 1 2 3 25 25 H 1.09001 * 110.72062 * 100.02571 * 4 2 1 26 26 H 1.09005 * 110.72207 * 336.75541 * 4 2 1 27 27 H 1.09002 * 111.00677 * 153.57697 * 5 4 2 28 28 H 1.09002 * 111.00564 * 277.38955 * 5 4 2 29 29 H 1.09008 * 110.36753 * 81.85112 * 6 5 4 30 30 H 1.09001 * 110.37094 * 204.16995 * 6 5 4 31 31 H 0.97000 * 119.99677 * 244.99946 * 11 8 7 32 32 H 1.09002 * 109.46707 * 285.00085 * 12 11 8 33 33 H 1.08996 * 109.46755 * 44.99592 * 12 11 8 34 34 H 1.09002 * 109.47048 * 299.99516 * 13 12 11 35 35 H 1.08998 * 109.47143 * 59.99831 * 13 12 11 36 36 H 0.97001 * 120.00620 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 6 3.2876 -1.5133 -0.6945 6 6 2.8156 -1.8804 0.7345 7 7 2.0300 -0.7156 1.1829 8 16 1.7561 -0.2855 2.7585 9 8 2.8113 -0.8568 3.5197 10 8 1.4688 1.1061 2.7504 11 7 0.3667 -1.0471 3.2401 12 6 0.3232 -2.5092 3.3213 13 6 -0.9038 -2.9389 4.1279 14 6 -0.9482 -4.4429 4.2120 15 1 -0.1785 -5.0333 3.7372 16 6 -1.9714 -5.0653 4.8950 17 7 -2.0105 -6.3778 4.9679 18 14 -3.3025 -4.0442 5.7169 19 1 -4.4140 -3.8164 4.7588 20 1 -3.8159 -4.7669 6.9081 21 1 -2.7354 -2.7376 6.1369 22 1 -0.3633 -1.0276 -0.0078 23 1 -0.3633 0.5071 0.8939 24 1 -0.3633 0.5206 -0.8860 25 1 2.3529 -0.0432 -2.0201 26 1 1.3051 -1.4437 -1.6202 27 1 3.4852 -2.4093 -1.2829 28 1 4.1656 -0.8681 -0.6622 29 1 2.1900 -2.7727 0.7099 30 1 3.6731 -2.0353 1.3893 31 1 -0.4183 -0.5251 3.4684 32 1 0.2621 -2.9272 2.3165 33 1 1.2261 -2.8728 3.8117 34 1 -0.8426 -2.5209 5.1328 35 1 -1.8067 -2.5752 3.6374 36 1 -2.7302 -6.8157 5.4488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351473616.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:04 Heat of formation + Delta-G solvation = -114.968804 kcal Electronic energy + Delta-G solvation = -18716.241719 eV Core-core repulsion = 15746.505094 eV Total energy + Delta-G solvation = -2969.736625 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63521 -38.44972 -37.09760 -37.03906 -34.72113 -32.27461 -31.86261 -31.51213 -26.59738 -26.41473 -22.96994 -22.77903 -21.97898 -20.26565 -19.24173 -18.74758 -18.29261 -17.48154 -16.58096 -16.27250 -15.73506 -15.70517 -14.98799 -14.65880 -14.62272 -14.47955 -13.94730 -13.63802 -13.46361 -13.42579 -13.33070 -13.26011 -13.12425 -12.69907 -12.55286 -12.26430 -11.99369 -11.83414 -11.82476 -11.66656 -11.52389 -11.46335 -10.78706 -10.44111 -10.04481 -8.29570 -6.34748 -0.49385 1.36654 1.39700 1.50278 1.85824 2.35902 2.49094 3.06081 3.17709 3.58112 3.86988 4.01109 4.16268 4.26775 4.41800 4.42762 4.51459 4.59535 4.67990 4.77373 4.83857 4.93253 5.02161 5.04564 5.15580 5.23793 5.30975 5.33727 5.42773 5.48750 5.52877 5.60810 6.06842 6.25845 6.72808 7.29903 8.86536 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.005626 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.021831 B = 4976.076125 C = 5218.659997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.138 3.862 3 H 0.079 0.921 4 C -0.116 4.116 5 C -0.121 4.121 6 C 0.101 3.899 7 N -1.015 6.015 8 S 2.817 3.183 9 O -1.011 7.011 10 O -1.001 7.001 11 N -1.121 6.121 12 C 0.144 3.856 13 C -0.016 4.016 14 C -0.533 4.533 15 H 0.041 0.959 16 C 0.009 3.991 17 N -0.947 5.947 18 Si 0.947 3.053 19 H -0.263 1.263 20 H -0.287 1.287 21 H -0.248 1.248 22 H 0.064 0.936 23 H 0.043 0.957 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.420 0.580 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.034 0.966 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 13.549 -14.159 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.032 3.968 3 H 0.097 0.903 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.024 4.024 7 N -0.857 5.857 8 S 2.826 3.174 9 O -0.995 6.995 10 O -0.986 6.986 11 N -0.884 5.884 12 C 0.018 3.982 13 C -0.055 4.055 14 C -0.572 4.572 15 H 0.059 0.941 16 C -0.189 4.189 17 N -0.587 5.587 18 Si 0.771 3.229 19 H -0.188 1.188 20 H -0.213 1.213 21 H -0.172 1.172 22 H 0.083 0.917 23 H 0.062 0.938 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.255 0.745 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.054 13.905 -13.496 20.621 hybrid contribution -1.225 -0.255 0.747 1.457 sum 5.830 13.650 -12.749 19.566 Atomic orbital electron populations 1.22379 0.94891 1.03012 1.03234 1.21582 0.94199 0.96190 0.84779 0.90325 1.22727 0.97629 0.99689 0.95455 1.22767 0.98178 1.01805 0.93269 1.22316 0.94759 0.87524 0.97803 1.58918 1.65474 1.39403 1.21906 1.00577 0.72696 0.71879 0.72249 1.93556 1.56293 1.80104 1.69550 1.93549 1.85631 1.32058 1.87325 1.55792 1.32272 1.16147 1.84139 1.21027 0.99751 0.76973 1.00411 1.19681 0.94792 0.94747 0.96282 1.21297 1.10294 0.91548 1.34040 0.94062 1.25931 1.00510 0.95909 0.96504 1.70045 1.34417 1.10221 1.44057 0.85704 0.79189 0.79647 0.78381 1.18794 1.21276 1.17172 0.91741 0.93763 0.88753 0.88002 0.89627 0.87974 0.90141 0.91154 0.90921 0.74507 0.91323 0.92464 0.95798 0.94724 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 9.17 71.98 0.66 -2.66 16 2 C 0.14 2.64 3.45 45.34 0.16 2.80 16 3 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.12 -1.50 6.48 31.78 0.21 -1.30 16 5 C -0.12 -1.70 7.08 31.98 0.23 -1.47 16 6 C 0.10 2.16 7.11 86.85 0.62 2.78 16 7 N -1.01 -25.03 3.46 -484.18 -1.67 -26.70 16 8 S 2.82 88.91 5.96 -56.49 -0.34 88.57 16 9 O -1.01 -38.86 16.93 -128.00 -2.17 -41.03 16 10 O -1.00 -34.32 17.54 -128.00 -2.24 -36.57 16 11 N -1.12 -35.34 6.05 -187.50 -1.14 -36.48 16 12 C 0.14 5.40 6.19 86.38 0.53 5.93 16 13 C -0.02 -0.71 4.18 29.85 0.12 -0.59 16 14 C -0.53 -29.58 9.66 25.60 0.25 -29.33 16 15 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 16 C 0.01 0.51 5.47 84.65 0.46 0.97 16 17 N -0.95 -58.07 13.96 21.44 0.30 -57.77 16 18 Si 0.95 42.98 27.47 68.60 1.88 44.86 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 0.96 7.76 -2.38 -0.02 0.94 16 24 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 1.03 7.85 -2.38 -0.02 1.01 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.07 1.68 7.78 -2.39 -0.02 1.66 16 31 H 0.42 11.79 8.65 -96.75 -0.84 10.95 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.06 2.30 7.75 -2.39 -0.02 2.28 16 34 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 35 H 0.03 1.43 7.57 -2.39 -0.02 1.42 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -71.62 306.91 -1.97 -73.59 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.17 Total: 14.39 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 3.24 Total: -22.87 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -2.51 Total: -120.95 kcal Atomic # 8 Polarization: -73.18 SS G_CDS: -4.41 Total: -77.59 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Atomic # 16 Polarization: 88.91 SS G_CDS: -0.34 Total: 88.57 kcal Total: -71.62 -1.97 -73.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351473616.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.383 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds