Wall clock time and date at job start Mon Mar 30 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.87159 * 2 1 4 4 C 1.54318 * 109.88095 * 121.02061 * 2 1 3 5 5 C 1.55540 * 102.76409 * 97.25782 * 4 2 1 6 6 C 1.54916 * 101.59813 * 35.53020 * 5 4 2 7 7 N 1.47018 * 109.88178 * 238.98960 * 2 1 3 8 8 S 1.65605 * 125.65203 * 59.55991 * 7 2 1 9 9 O 1.42094 * 106.40008 * 203.53933 * 8 7 2 10 10 O 1.42103 * 106.39963 * 336.45645 * 8 7 2 11 11 N 1.65596 * 107.21860 * 89.99554 * 8 7 2 12 12 C 1.46498 * 119.99835 * 65.00178 * 11 8 7 13 13 C 1.52999 * 109.47003 * 164.99791 * 12 11 8 14 14 C 1.50704 * 109.47148 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00222 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99974 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00069 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46963 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47167 * 119.99992 * 18 16 14 21 21 H 1.48497 * 109.46832 * 240.00076 * 18 16 14 22 22 H 1.09001 * 109.47002 * 180.69510 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.69947 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.69776 * 1 2 3 25 25 H 1.09005 * 110.71863 * 215.59009 * 4 2 1 26 26 H 1.09000 * 110.72049 * 338.85919 * 4 2 1 27 27 H 1.09003 * 111.02714 * 277.43762 * 5 4 2 28 28 H 1.09002 * 110.96859 * 153.59285 * 5 4 2 29 29 H 1.08994 * 110.36898 * 204.12065 * 6 5 4 30 30 H 1.08999 * 110.45696 * 81.84163 * 6 5 4 31 31 H 0.96990 * 120.00152 * 244.99981 * 11 8 7 32 32 H 1.08997 * 109.47743 * 284.99820 * 12 11 8 33 33 H 1.09003 * 109.47246 * 45.00149 * 12 11 8 34 34 H 1.09001 * 109.47043 * 299.99631 * 13 12 11 35 35 H 1.08998 * 109.47513 * 60.00255 * 13 12 11 36 36 H 0.96994 * 120.00127 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 1.2437 5 6 2.3519 -2.1704 0.6893 6 6 2.8569 -1.8487 -0.7395 7 7 2.0300 -0.7123 -1.1849 8 16 1.7172 -0.3050 -2.7594 9 8 1.8924 -1.4906 -3.5228 10 8 0.5075 0.4405 -2.7481 11 7 2.9069 0.7414 -3.2407 12 6 4.2957 0.2828 -3.3247 13 6 5.1177 1.2906 -4.1308 14 6 6.5463 0.8185 -4.2177 15 1 6.8388 -0.1074 -3.7450 16 6 7.4801 1.5693 -4.8999 17 7 7.1240 2.6971 -5.4752 18 14 9.2510 0.9845 -5.0071 19 1 9.3917 -0.3034 -4.2814 20 1 9.6240 0.7939 -6.4318 21 1 10.1451 1.9986 -4.3927 22 1 -0.3633 -1.0276 0.0125 23 1 -0.3633 0.5246 0.8836 24 1 -0.3633 0.5030 -0.8962 25 1 2.9657 -0.2810 1.6186 26 1 1.2918 -0.7863 2.0211 27 1 1.4453 -2.7746 0.6564 28 1 3.1272 -2.6636 1.2757 29 1 2.7089 -2.7059 -1.3962 30 1 3.9094 -1.5662 -0.7170 31 1 2.6843 1.6579 -3.4671 32 1 4.7110 0.1956 -2.3207 33 1 4.3283 -0.6891 -3.8171 34 1 4.7025 1.3777 -5.1348 35 1 5.0852 2.2625 -3.6385 36 1 7.7810 3.2254 -5.9548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351473620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:07 Heat of formation + Delta-G solvation = -91.663554 kcal Electronic energy + Delta-G solvation = -18576.129874 eV Core-core repulsion = 15607.403840 eV Total energy + Delta-G solvation = -2968.726034 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.78220 -37.01709 -35.58718 -35.35104 -32.73879 -31.24053 -30.95840 -29.12149 -25.80477 -24.47876 -22.24912 -21.28131 -20.85846 -19.07137 -17.66853 -17.24639 -16.30203 -16.03386 -15.36711 -14.74651 -14.39517 -14.06618 -13.86167 -13.63445 -13.37379 -12.88125 -12.63288 -12.54189 -12.17918 -11.84591 -11.80679 -11.71901 -11.47438 -11.28428 -11.15609 -11.09975 -10.77087 -10.66053 -10.59707 -10.49820 -9.61360 -9.28351 -9.06819 -8.87853 -8.42672 -6.09427 -4.12948 0.84480 3.13756 3.27066 3.34895 3.38672 3.81643 4.29305 4.39963 4.45945 4.75490 4.84599 5.10251 5.26263 5.27430 5.34759 5.41650 5.61077 5.66423 5.72460 5.75616 5.81714 5.97842 6.06633 6.16825 6.22621 6.32800 6.43630 6.55585 6.74586 7.45214 7.55203 7.64335 7.89337 8.27056 8.93156 9.51815 11.02104 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.005140 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.242054 B = 5445.719947 C = 5886.873019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.150 3.850 3 H 0.073 0.927 4 C -0.125 4.125 5 C -0.128 4.128 6 C 0.114 3.886 7 N -1.016 6.016 8 S 2.800 3.200 9 O -0.979 6.979 10 O -0.985 6.985 11 N -1.123 6.123 12 C 0.122 3.878 13 C 0.017 3.983 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.414 0.586 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.025 0.975 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.357 -6.416 13.627 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.044 3.956 3 H 0.091 0.909 4 C -0.164 4.164 5 C -0.167 4.167 6 C -0.012 4.012 7 N -0.856 5.856 8 S 2.809 3.191 9 O -0.962 6.962 10 O -0.969 6.969 11 N -0.885 5.885 12 C -0.003 4.003 13 C -0.021 4.021 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.248 0.752 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.982 -6.771 12.932 18.267 hybrid contribution 1.313 0.386 -0.010 1.369 sum -9.669 -6.385 12.923 17.356 Atomic orbital electron populations 1.22560 0.94905 1.02730 1.04231 1.21237 0.94116 0.95674 0.84605 0.90898 1.22764 1.01596 0.95554 0.96467 1.22802 1.01648 0.96872 0.95337 1.22062 0.94722 0.88502 0.95894 1.59115 1.64322 1.39621 1.22502 1.01325 0.72719 0.73323 0.71723 1.93591 1.86706 1.48313 1.67637 1.93536 1.43908 1.72935 1.86558 1.55904 1.22456 1.26795 1.83347 1.21569 0.78364 1.00025 1.00346 1.19288 0.93970 0.93625 0.95262 1.21126 0.93431 1.07522 1.34169 0.92244 1.25010 0.99153 0.94875 0.95271 1.69966 1.34511 1.13710 1.34972 0.86474 0.84508 0.78779 0.77869 1.19618 1.20918 1.20982 0.92461 0.91726 0.89237 0.90568 0.90258 0.90818 0.90097 0.90071 0.91178 0.75246 0.93169 0.91687 0.95676 0.95869 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 9.02 37.16 0.34 -1.70 16 2 C 0.15 1.67 3.69 -66.95 -0.25 1.43 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.12 -1.06 6.52 -24.69 -0.16 -1.22 16 5 C -0.13 -1.10 7.10 -24.37 -0.17 -1.27 16 6 C 0.11 1.31 7.11 -2.52 -0.02 1.30 16 7 N -1.02 -13.52 3.47 -104.42 -0.36 -13.88 16 8 S 2.80 46.10 6.35 -107.50 -0.68 45.42 16 9 O -0.98 -19.10 16.93 -57.17 -0.97 -20.07 16 10 O -0.99 -17.30 15.15 -57.17 -0.87 -18.17 16 11 N -1.12 -19.45 6.05 -10.61 -0.06 -19.51 16 12 C 0.12 2.44 6.19 -4.04 -0.03 2.42 16 13 C 0.02 0.43 5.12 -27.88 -0.14 0.29 16 14 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 18 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.09 1.20 5.62 -51.93 -0.29 0.91 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.55 7.83 -51.93 -0.41 0.14 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.97 7.78 -51.93 -0.40 0.56 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.41 6.74 8.65 -34.46 -0.30 6.44 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 34 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 306.50 15.07 4.62 4.62 Total: -1.00 -32.52 306.50 -9.02 -41.54 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -5.57 Total: 1.25 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.84 Total: -11.84 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.31 Total: -58.84 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -1.83 Total: -38.23 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 46.10 SS G_CDS: -0.68 Total: 45.42 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.52 -9.02 -41.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351473620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.120 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds