Wall clock time and date at job start Mon Mar 30 2020 04:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.87159 * 2 1 4 4 C 1.54318 * 109.88095 * 121.02061 * 2 1 3 5 5 C 1.55540 * 102.76409 * 97.25782 * 4 2 1 6 6 C 1.54916 * 101.59813 * 35.53020 * 5 4 2 7 7 N 1.47018 * 109.88178 * 238.98960 * 2 1 3 8 8 S 1.65605 * 125.65203 * 59.55991 * 7 2 1 9 9 O 1.42094 * 106.40008 * 203.53933 * 8 7 2 10 10 O 1.42103 * 106.39963 * 336.45645 * 8 7 2 11 11 N 1.65596 * 107.21860 * 89.99554 * 8 7 2 12 12 C 1.46498 * 119.99835 * 65.00178 * 11 8 7 13 13 C 1.52999 * 109.47003 * 164.99791 * 12 11 8 14 14 C 1.50704 * 109.47148 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00222 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99974 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00069 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46963 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47167 * 119.99992 * 18 16 14 21 21 H 1.48497 * 109.46832 * 240.00076 * 18 16 14 22 22 H 1.09001 * 109.47002 * 180.69510 * 1 2 3 23 23 H 1.08993 * 109.46955 * 300.69947 * 1 2 3 24 24 H 1.09000 * 109.47050 * 60.69776 * 1 2 3 25 25 H 1.09005 * 110.71863 * 215.59009 * 4 2 1 26 26 H 1.09000 * 110.72049 * 338.85919 * 4 2 1 27 27 H 1.09003 * 111.02714 * 277.43762 * 5 4 2 28 28 H 1.09002 * 110.96859 * 153.59285 * 5 4 2 29 29 H 1.08994 * 110.36898 * 204.12065 * 6 5 4 30 30 H 1.08999 * 110.45696 * 81.84163 * 6 5 4 31 31 H 0.96990 * 120.00152 * 244.99981 * 11 8 7 32 32 H 1.08997 * 109.47743 * 284.99820 * 12 11 8 33 33 H 1.09003 * 109.47246 * 45.00149 * 12 11 8 34 34 H 1.09001 * 109.47043 * 299.99631 * 13 12 11 35 35 H 1.08998 * 109.47513 * 60.00255 * 13 12 11 36 36 H 0.96994 * 120.00127 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 1.2437 5 6 2.3519 -2.1704 0.6893 6 6 2.8569 -1.8487 -0.7395 7 7 2.0300 -0.7123 -1.1849 8 16 1.7172 -0.3050 -2.7594 9 8 1.8924 -1.4906 -3.5228 10 8 0.5075 0.4405 -2.7481 11 7 2.9069 0.7414 -3.2407 12 6 4.2957 0.2828 -3.3247 13 6 5.1177 1.2906 -4.1308 14 6 6.5463 0.8185 -4.2177 15 1 6.8388 -0.1074 -3.7450 16 6 7.4801 1.5693 -4.8999 17 7 7.1240 2.6971 -5.4752 18 14 9.2510 0.9845 -5.0071 19 1 9.3917 -0.3034 -4.2814 20 1 9.6240 0.7939 -6.4318 21 1 10.1451 1.9986 -4.3927 22 1 -0.3633 -1.0276 0.0125 23 1 -0.3633 0.5246 0.8836 24 1 -0.3633 0.5030 -0.8962 25 1 2.9657 -0.2810 1.6186 26 1 1.2918 -0.7863 2.0211 27 1 1.4453 -2.7746 0.6564 28 1 3.1272 -2.6636 1.2757 29 1 2.7089 -2.7059 -1.3962 30 1 3.9094 -1.5662 -0.7170 31 1 2.6843 1.6579 -3.4671 32 1 4.7110 0.1956 -2.3207 33 1 4.3283 -0.6891 -3.8171 34 1 4.7025 1.3777 -5.1348 35 1 5.0852 2.2625 -3.6385 36 1 7.7810 3.2254 -5.9548 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351473620.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:07 Heat of formation + Delta-G solvation = -115.584833 kcal Electronic energy + Delta-G solvation = -18577.167179 eV Core-core repulsion = 15607.403840 eV Total energy + Delta-G solvation = -2969.763338 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.64913 -38.43104 -37.02890 -37.01030 -34.73702 -32.11492 -31.81889 -31.01803 -26.66791 -26.38515 -23.17216 -23.04038 -21.78670 -20.36542 -18.92600 -18.60229 -18.22359 -17.22377 -16.52002 -16.47403 -15.81523 -15.61435 -15.14273 -14.71879 -14.44910 -14.28210 -13.79738 -13.48532 -13.40605 -13.28791 -13.26309 -13.07612 -12.99955 -12.96164 -12.47141 -12.42507 -12.32009 -11.92913 -11.55245 -11.53323 -11.40585 -11.30216 -10.65229 -10.37982 -10.04277 -8.21822 -6.33040 -0.47120 1.42806 1.43884 1.56713 1.89264 2.41550 2.50980 3.13269 3.20518 3.61955 3.85752 4.07349 4.18770 4.30649 4.41656 4.47588 4.58723 4.59517 4.77799 4.83847 4.90724 5.00339 5.02021 5.06178 5.19886 5.30660 5.35610 5.46107 5.51568 5.56851 5.60125 5.79063 6.02113 6.21433 6.82779 7.36697 8.90645 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.028355 B = 0.005140 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.242054 B = 5445.719947 C = 5886.873019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 H 0.073 0.927 4 C -0.117 4.117 5 C -0.119 4.119 6 C 0.100 3.900 7 N -1.014 6.014 8 S 2.817 3.183 9 O -1.011 7.011 10 O -0.997 6.997 11 N -1.125 6.125 12 C 0.138 3.862 13 C 0.020 3.980 14 C -0.543 4.543 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.258 1.258 20 H -0.282 1.282 21 H -0.278 1.278 22 H 0.060 0.940 23 H 0.089 0.911 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.417 0.583 32 H 0.070 0.930 33 H 0.059 0.941 34 H -0.004 1.004 35 H 0.008 0.992 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -7.490 15.828 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.032 3.968 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.158 4.158 6 C -0.024 4.024 7 N -0.856 5.856 8 S 2.826 3.174 9 O -0.995 6.995 10 O -0.981 6.981 11 N -0.886 5.886 12 C 0.013 3.987 13 C -0.019 4.019 14 C -0.581 4.581 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.182 1.182 20 H -0.208 1.208 21 H -0.203 1.203 22 H 0.079 0.921 23 H 0.108 0.892 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.251 0.749 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.015 0.985 35 H 0.026 0.974 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.404 -7.845 15.133 19.970 hybrid contribution 1.059 0.735 -0.659 1.448 sum -9.346 -7.109 14.474 18.638 Atomic orbital electron populations 1.22544 0.94812 1.02960 1.04050 1.21560 0.94340 0.96056 0.84861 0.90868 1.22779 1.02563 0.94777 0.95412 1.22820 1.02511 0.97246 0.93261 1.22332 0.94810 0.87527 0.97779 1.58880 1.64600 1.40312 1.21826 1.00621 0.72186 0.72365 0.72200 1.93544 1.87036 1.49483 1.69448 1.93527 1.44289 1.73179 1.87116 1.55840 1.21508 1.27144 1.84106 1.21216 0.79038 0.98074 1.00397 1.19163 0.94139 0.94245 0.94340 1.21589 0.94619 1.07863 1.34055 0.91311 1.25958 1.03919 0.94920 0.94834 1.70095 1.36153 1.15061 1.35906 0.85362 0.78765 0.78804 0.77890 1.18188 1.20776 1.20338 0.92085 0.89186 0.92051 0.89694 0.88020 0.90292 0.87827 0.90915 0.90872 0.74878 0.91178 0.92275 0.98514 0.97408 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 9.02 71.98 0.65 -3.07 16 2 C 0.14 2.78 3.69 45.34 0.17 2.95 16 3 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 4 C -0.12 -1.57 6.52 31.92 0.21 -1.36 16 5 C -0.12 -1.68 7.10 32.12 0.23 -1.45 16 6 C 0.10 2.14 7.11 86.86 0.62 2.76 16 7 N -1.01 -25.80 3.47 -484.26 -1.68 -27.48 16 8 S 2.82 92.82 6.35 -56.49 -0.36 92.46 16 9 O -1.01 -39.82 16.93 -128.00 -2.17 -41.99 16 10 O -1.00 -35.21 15.15 -128.00 -1.94 -37.15 16 11 N -1.12 -39.32 6.05 -187.50 -1.14 -40.45 16 12 C 0.14 5.55 6.19 86.38 0.53 6.08 16 13 C 0.02 1.00 5.12 29.85 0.15 1.16 16 14 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 15 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 16 C 0.00 0.11 5.46 84.66 0.46 0.57 16 17 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 18 Si 0.97 42.97 29.54 68.60 2.03 44.99 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 1.60 5.62 -2.39 -0.01 1.59 16 25 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.10 0.97 7.83 -2.39 -0.02 0.95 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.67 7.78 -2.39 -0.02 1.65 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.42 13.91 8.65 -96.76 -0.84 13.07 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.06 2.44 7.75 -2.39 -0.02 2.42 16 34 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -69.89 306.50 -1.49 -71.38 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.23 Total: 15.23 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 3.25 Total: -21.82 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -2.53 Total: -123.10 kcal Atomic # 8 Polarization: -75.04 SS G_CDS: -4.11 Total: -79.14 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 92.82 SS G_CDS: -0.36 Total: 92.46 kcal Total: -69.89 -1.49 -71.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351473620.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.202 kcal (2) G-P(sol) polarization free energy of solvation -69.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds