Wall clock time and date at job start Mon Mar 30 2020 05:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21288 * 120.00288 * 2 1 4 4 N 1.34783 * 119.99998 * 180.27535 * 2 1 3 5 5 C 1.46499 * 119.99958 * 359.72496 * 4 2 1 6 6 C 1.39891 * 119.99822 * 179.72640 * 4 2 1 7 7 C 1.38718 * 120.11412 * 89.99927 * 6 4 2 8 8 C 1.38179 * 120.00827 * 179.97438 * 7 6 4 9 9 C 1.38438 * 120.24979 * 0.02780 * 8 7 6 10 10 C 1.38081 * 120.23082 * 359.97438 * 9 8 7 11 11 C 1.38942 * 119.98282 * 359.71959 * 10 9 8 12 12 N 1.39470 * 120.11853 * 180.27655 * 11 10 9 13 13 C 1.34770 * 120.00340 * 325.27713 * 12 11 10 14 14 O 1.21778 * 120.00353 * 4.50275 * 13 12 11 15 15 C 1.41783 * 120.00111 * 184.49478 * 13 12 11 16 16 H 1.08003 * 119.99721 * 0.02562 * 15 13 12 17 17 C 1.40135 * 119.99864 * 180.02562 * 15 13 12 18 18 N 1.30629 * 120.00346 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 119.99874 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47141 * 59.99511 * 19 17 15 21 21 H 1.48498 * 109.47186 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46570 * 300.00124 * 19 17 15 23 23 H 1.09000 * 109.46946 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47174 * 119.99845 * 1 2 3 25 25 H 1.08996 * 109.47285 * 239.99733 * 1 2 3 26 26 H 1.08996 * 109.47147 * 89.99654 * 5 4 2 27 27 H 1.08995 * 109.47177 * 210.00161 * 5 4 2 28 28 H 1.09001 * 109.47022 * 329.99959 * 5 4 2 29 29 H 1.08001 * 119.99556 * 359.97438 * 7 6 4 30 30 H 1.08008 * 119.87425 * 179.97438 * 8 7 6 31 31 H 1.08001 * 119.88290 * 179.97438 * 9 8 7 32 32 H 1.08001 * 120.00671 * 180.02562 * 10 9 8 33 33 H 0.97012 * 119.99542 * 145.28545 * 12 11 10 34 34 H 0.96998 * 120.00220 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 1.4484 -2.4360 -0.0056 6 6 3.5798 -1.1672 -0.0114 7 6 4.2807 -1.1700 1.1857 8 6 5.6625 -1.1705 1.1774 9 6 6.3527 -1.1675 -0.0226 10 6 5.6652 -1.1646 -1.2201 11 6 4.2758 -1.1706 -1.2231 12 7 3.5785 -1.1735 -2.4309 13 6 4.0695 -0.5065 -3.4941 14 8 5.1606 0.0299 -3.4256 15 6 3.3158 -0.4296 -4.6926 16 1 2.3480 -0.9051 -4.7532 17 6 3.8266 0.2635 -5.7982 18 7 4.9974 0.8382 -5.7250 19 14 2.8332 0.3655 -7.3770 20 1 1.5356 1.0335 -7.1031 21 1 3.5894 1.1474 -8.3880 22 1 2.5853 -1.0040 -7.8951 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 -0.5138 0.8899 26 1 1.2624 -2.7481 -1.0332 27 1 2.0395 -3.1968 0.5039 28 1 0.4981 -2.3069 0.5125 29 1 3.7464 -1.1719 2.1242 30 1 6.2060 -1.1723 2.1107 31 1 7.4327 -1.1675 -0.0222 32 1 6.2073 -1.1628 -2.1542 33 1 2.7400 -1.6555 -2.5057 34 1 5.3511 1.3176 -6.4904 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356836538.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:28 Heat of formation + Delta-G solvation = -36.351974 kcal Electronic energy + Delta-G solvation = -19797.035959 eV Core-core repulsion = 16695.264464 eV Total energy + Delta-G solvation = -3101.771495 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21099 -38.46733 -36.94061 -35.15256 -33.44450 -32.36487 -30.68137 -29.29182 -28.42560 -26.65189 -26.07954 -22.42850 -22.13040 -19.85507 -19.24436 -17.59535 -16.92727 -16.39059 -16.08781 -15.70206 -15.32527 -14.36326 -14.27159 -13.90966 -13.38164 -13.16208 -13.06127 -12.71064 -12.63487 -12.50037 -12.25792 -11.99943 -11.72339 -11.43074 -11.18879 -11.03879 -10.90944 -10.61030 -10.37253 -9.59433 -9.29765 -8.85724 -8.60863 -8.28492 -7.65236 -7.04096 -6.35400 -4.89100 1.84321 2.08970 2.90137 3.07091 3.12105 3.14152 3.24290 3.98168 4.24422 4.48492 4.68412 4.88058 5.09087 5.28417 5.31989 5.41679 5.52501 5.58133 5.65231 5.74279 5.83712 5.87507 6.09902 6.25480 6.50759 6.76273 6.95195 7.14061 7.22424 7.25087 7.46249 7.58590 7.85395 8.02766 8.20597 8.52534 8.81047 9.29182 10.40115 10.60476 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.007190 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.082446 B = 3893.146743 C = 4851.183450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.509 3.491 3 O -0.523 6.523 4 N -0.570 5.570 5 C 0.080 3.920 6 C 0.070 3.930 7 C -0.092 4.092 8 C -0.163 4.163 9 C -0.097 4.097 10 C -0.127 4.127 11 C 0.205 3.795 12 N -0.695 5.695 13 C 0.546 3.454 14 O -0.564 6.564 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.088 3.912 18 N -0.747 5.747 19 Si 0.913 3.087 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.266 1.266 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.147 0.853 33 H 0.387 0.613 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 -7.877 10.038 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.298 3.702 3 O -0.398 6.398 4 N -0.302 5.302 5 C -0.063 4.063 6 C -0.023 4.023 7 C -0.112 4.112 8 C -0.183 4.183 9 C -0.116 4.116 10 C -0.149 4.149 11 C 0.104 3.896 12 N -0.337 5.337 13 C 0.355 3.645 14 O -0.447 6.447 15 C -0.573 4.573 16 H 0.085 0.915 17 C -0.135 4.135 18 N -0.374 5.374 19 Si 0.737 3.263 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.191 1.191 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.165 0.835 33 H 0.220 0.780 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.436 -6.755 9.854 13.571 hybrid contribution -1.042 -0.230 -0.786 1.325 sum -7.478 -6.985 9.068 13.673 Atomic orbital electron populations 1.21920 0.91804 1.05289 1.03835 1.20885 0.90332 0.83118 0.75863 1.90766 1.70609 1.30824 1.47566 1.45104 1.04039 1.06404 1.74644 1.21870 0.96856 0.85501 1.02059 1.17284 0.81850 1.10967 0.92218 1.20833 0.94197 1.00155 0.96004 1.20745 0.93445 1.06440 0.97678 1.21065 0.99469 0.98864 0.92187 1.21475 0.92714 1.01216 0.99460 1.18205 0.91703 0.93861 0.85847 1.44067 1.25452 1.54408 1.09793 1.17045 0.86834 0.78428 0.82170 1.90635 1.22214 1.49543 1.82327 1.19967 1.05040 1.35668 0.96641 0.91453 1.25751 0.94567 0.93265 0.99903 1.69994 1.15054 1.22286 1.30053 0.86344 0.80283 0.79098 0.80593 1.19075 1.20278 1.19061 0.89167 0.89306 0.89685 0.92465 0.90919 0.90802 0.86916 0.86746 0.86458 0.83521 0.77983 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 8.87 36.00 0.32 -1.59 16 2 C 0.51 8.85 7.75 -10.99 -0.09 8.76 16 3 O -0.52 -12.15 17.06 5.55 0.09 -12.05 16 4 N -0.57 -9.08 2.39 -120.63 -0.29 -9.36 16 5 C 0.08 0.83 10.23 59.85 0.61 1.44 16 6 C 0.07 1.33 4.48 -83.44 -0.37 0.96 16 7 C -0.09 -1.57 9.96 -39.43 -0.39 -1.96 16 8 C -0.16 -2.68 10.04 -39.53 -0.40 -3.07 16 9 C -0.10 -1.77 10.04 -39.57 -0.40 -2.17 16 10 C -0.13 -2.83 8.69 -39.38 -0.34 -3.17 16 11 C 0.21 4.57 6.32 -83.56 -0.53 4.04 16 12 N -0.70 -16.42 5.14 -12.29 -0.06 -16.49 16 13 C 0.55 15.67 7.41 -14.91 -0.11 15.55 16 14 O -0.56 -18.10 12.29 5.12 0.06 -18.04 16 15 C -0.54 -15.01 9.31 -37.52 -0.35 -15.36 16 16 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 17 C 0.09 2.42 5.50 -17.35 -0.10 2.32 16 18 N -0.75 -21.98 11.73 55.55 0.65 -21.33 16 19 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H 0.09 1.03 8.12 -51.93 -0.42 0.61 16 24 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 25 H 0.08 0.68 7.41 -51.93 -0.38 0.30 16 26 H 0.06 0.57 7.97 -51.93 -0.41 0.15 16 27 H 0.07 0.69 8.05 -51.93 -0.42 0.28 16 28 H 0.07 0.54 6.45 -51.93 -0.33 0.20 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 31 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.15 3.67 6.19 -52.49 -0.33 3.35 16 33 H 0.39 7.97 8.30 -40.81 -0.34 7.63 16 34 H 0.27 7.27 8.29 -40.82 -0.34 6.94 16 LS Contribution 299.00 15.07 4.51 4.51 Total: -1.00 -37.14 299.00 -6.07 -43.22 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -3.87 Total: 9.13 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.14 Total: 5.76 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.30 Total: -47.18 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: 0.16 Total: -30.09 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -37.14 -6.07 -43.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356836538.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.864 kcal (2) G-P(sol) polarization free energy of solvation -37.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds