Wall clock time and date at job start Mon Mar 30 2020 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21288 * 120.00288 * 2 1 4 4 N 1.34783 * 119.99998 * 180.27535 * 2 1 3 5 5 C 1.46499 * 119.99958 * 359.72496 * 4 2 1 6 6 C 1.39891 * 119.99822 * 179.72640 * 4 2 1 7 7 C 1.38718 * 120.11412 * 89.99927 * 6 4 2 8 8 C 1.38179 * 120.00827 * 179.97438 * 7 6 4 9 9 C 1.38438 * 120.24979 * 0.02780 * 8 7 6 10 10 C 1.38081 * 120.23082 * 359.97438 * 9 8 7 11 11 C 1.38942 * 119.98282 * 359.71959 * 10 9 8 12 12 N 1.39470 * 120.11853 * 180.27655 * 11 10 9 13 13 C 1.34770 * 120.00340 * 325.27713 * 12 11 10 14 14 O 1.21778 * 120.00353 * 4.50275 * 13 12 11 15 15 C 1.41783 * 120.00111 * 184.49478 * 13 12 11 16 16 H 1.08003 * 119.99721 * 0.02562 * 15 13 12 17 17 C 1.40135 * 119.99864 * 180.02562 * 15 13 12 18 18 N 1.30629 * 120.00346 * 0.02562 * 17 15 13 19 19 Si 1.86809 * 119.99874 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47141 * 59.99511 * 19 17 15 21 21 H 1.48498 * 109.47186 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46570 * 300.00124 * 19 17 15 23 23 H 1.09000 * 109.46946 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47174 * 119.99845 * 1 2 3 25 25 H 1.08996 * 109.47285 * 239.99733 * 1 2 3 26 26 H 1.08996 * 109.47147 * 89.99654 * 5 4 2 27 27 H 1.08995 * 109.47177 * 210.00161 * 5 4 2 28 28 H 1.09001 * 109.47022 * 329.99959 * 5 4 2 29 29 H 1.08001 * 119.99556 * 359.97438 * 7 6 4 30 30 H 1.08008 * 119.87425 * 179.97438 * 8 7 6 31 31 H 1.08001 * 119.88290 * 179.97438 * 9 8 7 32 32 H 1.08001 * 120.00671 * 180.02562 * 10 9 8 33 33 H 0.97012 * 119.99542 * 145.28545 * 12 11 10 34 34 H 0.96998 * 120.00220 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 1.4484 -2.4360 -0.0056 6 6 3.5798 -1.1672 -0.0114 7 6 4.2807 -1.1700 1.1857 8 6 5.6625 -1.1705 1.1774 9 6 6.3527 -1.1675 -0.0226 10 6 5.6652 -1.1646 -1.2201 11 6 4.2758 -1.1706 -1.2231 12 7 3.5785 -1.1735 -2.4309 13 6 4.0695 -0.5065 -3.4941 14 8 5.1606 0.0299 -3.4256 15 6 3.3158 -0.4296 -4.6926 16 1 2.3480 -0.9051 -4.7532 17 6 3.8266 0.2635 -5.7982 18 7 4.9974 0.8382 -5.7250 19 14 2.8332 0.3655 -7.3770 20 1 1.5356 1.0335 -7.1031 21 1 3.5894 1.1474 -8.3880 22 1 2.5853 -1.0040 -7.8951 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 -0.5138 0.8899 26 1 1.2624 -2.7481 -1.0332 27 1 2.0395 -3.1968 0.5039 28 1 0.4981 -2.3069 0.5125 29 1 3.7464 -1.1719 2.1242 30 1 6.2060 -1.1723 2.1107 31 1 7.4327 -1.1675 -0.0222 32 1 6.2073 -1.1628 -2.1542 33 1 2.7400 -1.6555 -2.5057 34 1 5.3511 1.3176 -6.4904 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356836538.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:27 Heat of formation + Delta-G solvation = -63.722573 kcal Electronic energy + Delta-G solvation = -19798.222838 eV Core-core repulsion = 16695.264464 eV Total energy + Delta-G solvation = -3102.958373 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.65458 -40.12860 -38.74143 -36.49826 -35.35829 -34.47358 -31.94730 -30.90368 -29.70606 -28.39539 -27.36018 -24.06619 -23.63287 -21.72180 -20.61776 -19.46968 -18.37657 -17.81064 -17.69251 -17.42293 -16.80131 -15.98850 -15.78338 -15.54180 -14.99687 -14.67956 -14.49963 -14.29837 -14.00687 -13.56864 -13.47820 -13.26705 -13.07920 -12.94768 -12.80279 -12.77515 -12.58449 -12.36536 -12.09971 -11.14151 -10.97658 -10.80648 -10.03869 -9.84193 -9.62922 -8.78247 -8.41842 -7.07073 0.35476 0.55027 1.35070 1.38843 1.51665 1.61166 2.06514 2.17600 2.33654 2.80073 2.97995 3.59176 3.80431 4.06482 4.20898 4.27841 4.47408 4.48882 4.57159 4.60327 4.69118 4.78844 4.89781 4.98473 5.06797 5.15656 5.33119 5.49715 5.63134 5.72670 5.81630 5.96921 6.10166 6.34973 6.44523 6.68351 7.23020 7.33076 8.34168 8.52607 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.019425 B = 0.007190 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.082446 B = 3893.146743 C = 4851.183450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.496 3.504 3 O -0.598 6.598 4 N -0.569 5.569 5 C 0.071 3.929 6 C 0.073 3.927 7 C -0.093 4.093 8 C -0.144 4.144 9 C -0.100 4.100 10 C -0.159 4.159 11 C 0.162 3.838 12 N -0.689 5.689 13 C 0.529 3.471 14 O -0.613 6.613 15 C -0.566 4.566 16 H 0.089 0.911 17 C 0.029 3.971 18 N -0.802 5.802 19 Si 1.004 2.996 20 H -0.254 1.254 21 H -0.271 1.271 22 H -0.248 1.248 23 H 0.084 0.916 24 H 0.109 0.891 25 H 0.128 0.872 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.147 0.853 30 H 0.160 0.840 31 H 0.141 0.859 32 H 0.103 0.897 33 H 0.399 0.601 34 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 -9.275 11.483 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.288 3.712 3 O -0.478 6.478 4 N -0.299 5.299 5 C -0.069 4.069 6 C -0.021 4.021 7 C -0.112 4.112 8 C -0.163 4.163 9 C -0.119 4.119 10 C -0.181 4.181 11 C 0.062 3.938 12 N -0.332 5.332 13 C 0.339 3.661 14 O -0.501 6.501 15 C -0.601 4.601 16 H 0.107 0.893 17 C -0.189 4.189 18 N -0.430 5.430 19 Si 0.822 3.178 20 H -0.178 1.178 21 H -0.196 1.196 22 H -0.171 1.171 23 H 0.103 0.897 24 H 0.128 0.872 25 H 0.147 0.853 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.178 0.822 31 H 0.159 0.841 32 H 0.121 0.879 33 H 0.234 0.766 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.146 -8.244 11.359 16.752 hybrid contribution -0.163 0.128 -1.050 1.071 sum -9.309 -8.116 10.309 16.087 Atomic orbital electron populations 1.21956 0.86761 1.06082 1.06813 1.22075 0.92742 0.82235 0.74132 1.90734 1.72447 1.33436 1.51188 1.45392 1.02963 1.08176 1.73411 1.22242 0.98270 0.83176 1.03261 1.17496 0.83882 1.09135 0.91560 1.21291 0.94756 0.98712 0.96461 1.21250 0.93537 1.03092 0.98431 1.21329 1.00787 0.98207 0.91532 1.21317 0.93317 1.04040 0.99428 1.18511 0.92012 0.96834 0.86423 1.43532 1.25828 1.54228 1.09626 1.17471 0.86483 0.78484 0.83701 1.90592 1.24139 1.51708 1.83634 1.20524 1.05994 1.36407 0.97148 0.89270 1.27103 0.95621 0.91895 1.04281 1.70167 1.17592 1.23464 1.31799 0.84983 0.78252 0.80023 0.74539 1.17832 1.19569 1.17141 0.89666 0.87227 0.85334 0.92032 0.89804 0.86607 0.83547 0.82216 0.84112 0.87909 0.76640 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 8.87 71.23 0.63 -2.40 16 2 C 0.50 16.64 7.75 87.65 0.68 17.32 16 3 O -0.60 -28.32 17.06 -3.05 -0.05 -28.37 16 4 N -0.57 -17.11 2.39 -653.93 -1.56 -18.67 16 5 C 0.07 1.23 10.23 127.77 1.31 2.54 16 6 C 0.07 2.73 4.48 38.33 0.17 2.90 16 7 C -0.09 -2.93 9.96 22.37 0.22 -2.71 16 8 C -0.14 -4.35 10.04 22.30 0.22 -4.12 16 9 C -0.10 -3.66 10.04 22.28 0.22 -3.44 16 10 C -0.16 -7.55 8.69 22.40 0.19 -7.36 16 11 C 0.16 7.50 6.32 38.46 0.24 7.75 16 12 N -0.69 -34.16 5.14 -311.00 -1.60 -35.76 16 13 C 0.53 32.20 7.41 85.12 0.63 32.83 16 14 O -0.61 -42.46 12.29 -4.60 -0.06 -42.51 16 15 C -0.57 -32.63 9.31 23.61 0.22 -32.41 16 16 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 17 C 0.03 1.63 5.50 85.33 0.47 2.10 16 18 N -0.80 -49.53 11.73 21.85 0.26 -49.28 16 19 Si 1.00 40.61 29.56 68.60 2.03 42.64 16 20 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.25 -9.23 7.11 99.48 0.71 -8.53 16 23 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 24 H 0.11 1.70 8.10 -2.39 -0.02 1.68 16 25 H 0.13 1.36 7.41 -2.39 -0.02 1.34 16 26 H 0.06 1.05 7.97 -2.39 -0.02 1.03 16 27 H 0.08 1.30 8.05 -2.39 -0.02 1.28 16 28 H 0.12 1.06 6.45 -2.39 -0.02 1.04 16 29 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 31 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.10 5.72 6.19 -2.91 -0.02 5.70 16 33 H 0.40 16.91 8.30 -92.70 -0.77 16.14 16 34 H 0.28 15.54 8.29 -92.71 -0.77 14.77 16 Total: -1.00 -90.35 299.00 4.59 -85.75 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.36 Total: 33.20 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.22 Total: 12.99 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -2.91 Total: -103.71 kcal Atomic # 8 Polarization: -70.77 SS G_CDS: -0.11 Total: -70.88 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -90.35 4.59 -85.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356836538.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.030 kcal (2) G-P(sol) polarization free energy of solvation -90.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds