Wall clock time and date at job start Mon Mar 30 2020 04:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47405 * 2 1 4 4 N 1.46493 * 109.47600 * 180.02562 * 3 2 1 5 5 C 1.47181 * 127.30525 * 275.02856 * 4 3 2 6 6 C 1.53215 * 109.13053 * 200.62237 * 5 4 3 7 7 N 1.47901 * 108.04053 * 325.42159 * 6 5 4 8 8 C 1.46503 * 128.11481 * 211.29331 * 7 6 5 9 9 C 1.53001 * 109.47391 * 274.86248 * 8 7 6 10 10 C 1.50699 * 109.47314 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99749 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00320 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99674 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00407 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47406 * 90.00069 * 14 12 10 16 16 H 1.48500 * 109.46995 * 210.00117 * 14 12 10 17 17 H 1.48502 * 109.46959 * 329.99965 * 14 12 10 18 18 S 1.66954 * 127.30806 * 94.99966 * 4 3 2 19 19 O 1.42105 * 107.11405 * 290.91370 * 18 4 3 20 20 O 1.42099 * 107.11453 * 65.62502 * 18 4 3 21 21 H 1.09000 * 109.47498 * 59.99668 * 1 2 3 22 22 H 1.09005 * 109.47354 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46945 * 299.99799 * 1 2 3 24 24 H 1.09001 * 109.46945 * 240.00201 * 2 1 3 25 25 H 1.09000 * 109.47498 * 120.00332 * 2 1 3 26 26 H 1.09001 * 109.46905 * 60.00177 * 3 2 1 27 27 H 1.09000 * 109.47063 * 300.00597 * 3 2 1 28 28 H 1.08996 * 109.54392 * 320.54685 * 5 4 3 29 29 H 1.08997 * 109.54545 * 80.72829 * 5 4 3 30 30 H 1.08997 * 109.77135 * 84.96179 * 6 5 4 31 31 H 1.09002 * 109.76892 * 205.69943 * 6 5 4 32 32 H 1.09002 * 109.47344 * 34.86246 * 8 7 6 33 33 H 1.08999 * 109.47111 * 154.85897 * 8 7 6 34 34 H 1.09001 * 109.46528 * 299.99866 * 9 8 7 35 35 H 1.08999 * 109.47279 * 59.99752 * 9 8 7 36 36 H 0.96998 * 120.00263 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3974 1.3397 1.1652 6 6 5.7792 1.8847 0.7893 7 7 6.0348 1.5469 -0.6277 8 6 7.3197 1.2647 -1.2725 9 6 7.9779 2.5796 -1.6954 10 6 9.2993 2.2892 -2.3592 11 1 9.6362 1.2689 -2.4681 12 6 10.0781 3.3261 -2.8274 13 7 9.6681 4.5685 -2.6943 14 14 11.7157 2.9662 -3.6508 15 1 11.5080 2.7920 -5.1108 16 1 12.6477 4.0980 -3.4150 17 1 12.2934 1.7223 -3.0812 18 16 4.5163 1.5585 -1.3239 19 8 4.3839 0.3493 -2.0587 20 8 4.3236 2.8494 -1.8856 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 3.9879 1.9222 1.9904 29 1 4.4870 0.2956 1.4650 30 1 5.7959 2.9670 0.9170 31 1 6.5404 1.4271 1.4213 32 1 7.9706 0.7414 -0.5720 33 1 7.1560 0.6411 -2.1514 34 1 7.3270 3.1027 -2.3960 35 1 8.1416 3.2031 -0.8165 36 1 10.2158 5.2980 -3.0241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379799276.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:19 Heat of formation + Delta-G solvation = -69.470679 kcal Electronic energy + Delta-G solvation = -18436.636759 eV Core-core repulsion = 15468.873080 eV Total energy + Delta-G solvation = -2967.763678 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.87804 -36.69690 -35.99403 -35.37468 -33.78391 -32.56355 -30.29715 -27.96072 -25.64879 -24.62377 -22.71660 -21.72606 -20.88834 -18.80806 -17.14516 -16.81002 -16.37377 -15.72644 -15.62823 -14.71543 -14.67558 -14.47290 -14.13503 -13.69889 -13.26867 -12.98233 -12.74031 -12.44662 -12.28924 -11.84445 -11.70136 -11.57236 -11.55374 -11.39121 -11.27254 -11.17019 -10.88149 -10.72582 -10.64445 -9.98805 -9.84352 -9.20111 -9.13407 -8.38240 -8.36617 -6.00936 -4.05618 0.74015 2.95249 3.32793 3.38382 3.40574 3.44015 4.13495 4.26384 4.45828 4.76495 4.80467 4.89739 5.06040 5.22725 5.29802 5.34657 5.41514 5.44530 5.56468 5.69055 5.72180 5.80188 5.80994 6.02658 6.09983 6.34049 6.41219 6.57202 6.76997 6.94339 7.67402 7.75428 7.99697 8.34728 9.01697 9.58691 11.10234 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.049446 B = 0.004547 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.142846 B = 6155.921228 C = 6237.420500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.152 4.152 3 C 0.163 3.837 4 N -1.009 6.009 5 C 0.076 3.924 6 C 0.070 3.930 7 N -0.994 5.994 8 C 0.163 3.837 9 C 0.001 3.999 10 C -0.527 4.527 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 S 2.761 3.239 19 O -0.986 6.986 20 O -0.973 6.973 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.022 0.978 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.044 -7.487 10.720 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C 0.038 3.962 4 N -0.852 5.852 5 C -0.051 4.051 6 C -0.057 4.057 7 N -0.838 5.838 8 C 0.041 3.959 9 C -0.038 4.038 10 C -0.566 4.566 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.529 5.529 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 S 2.771 3.229 19 O -0.968 6.968 20 O -0.955 6.955 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.238 -7.261 9.633 19.435 hybrid contribution 1.079 -0.055 0.140 1.090 sum -14.158 -7.316 9.773 18.695 Atomic orbital electron populations 1.21715 0.95158 1.02041 1.01939 1.22088 0.95978 0.97621 1.03480 1.21028 0.75641 0.96484 1.03029 1.57532 1.13382 1.91392 1.22844 1.22259 0.88443 1.02831 0.91528 1.22418 0.95642 1.02144 0.85487 1.57665 1.22162 1.87166 1.16855 1.21528 0.79032 1.00037 0.95317 1.19580 0.95274 0.91696 0.97249 1.21105 1.03581 0.93127 1.38765 0.92289 1.25021 0.98287 0.95049 0.95962 1.69986 1.38028 0.98578 1.46268 0.86542 0.83411 0.77850 0.79870 1.20572 1.21224 1.19789 1.03081 0.73627 0.74527 0.71663 1.93563 1.85797 1.47623 1.69833 1.93637 1.85095 1.41681 1.75075 0.92457 0.92381 0.92586 0.90889 0.91403 0.90311 0.90494 0.88514 0.90553 0.89929 0.87367 0.91230 0.91116 0.95915 0.95818 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.15 0.37 -0.73 16 2 C -0.15 -1.45 6.26 -26.74 -0.17 -1.61 16 3 C 0.16 1.68 6.45 -4.05 -0.03 1.66 16 4 N -1.01 -13.11 3.43 -113.75 -0.39 -13.50 16 5 C 0.08 0.77 7.20 -3.56 -0.03 0.74 16 6 C 0.07 0.90 7.15 -3.16 -0.02 0.87 16 7 N -0.99 -17.84 3.46 -113.19 -0.39 -18.23 16 8 C 0.16 3.38 6.46 -4.04 -0.03 3.36 16 9 C 0.00 0.02 5.30 -27.88 -0.15 -0.13 16 10 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 11 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 14 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 S 2.76 50.56 6.17 -107.50 -0.66 49.90 16 19 O -0.99 -20.24 18.17 -57.06 -1.04 -21.28 16 20 O -0.97 -21.55 18.17 -57.06 -1.04 -22.59 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 315.03 15.07 4.75 4.75 Total: -1.00 -35.87 315.03 -9.40 -45.27 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -5.88 Total: -5.15 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -0.46 Total: -9.42 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.05 Total: -58.10 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -2.07 Total: -43.87 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 50.56 SS G_CDS: -0.66 Total: 49.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.87 -9.40 -45.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379799276.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.205 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds