Wall clock time and date at job start Mon Mar 30 2020 04:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47405 * 2 1 4 4 N 1.46493 * 109.47600 * 180.02562 * 3 2 1 5 5 C 1.47181 * 127.30525 * 275.02856 * 4 3 2 6 6 C 1.53215 * 109.13053 * 200.62237 * 5 4 3 7 7 N 1.47901 * 108.04053 * 325.42159 * 6 5 4 8 8 C 1.46503 * 128.11481 * 211.29331 * 7 6 5 9 9 C 1.53001 * 109.47391 * 274.86248 * 8 7 6 10 10 C 1.50699 * 109.47314 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99749 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00320 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99674 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00407 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47406 * 90.00069 * 14 12 10 16 16 H 1.48500 * 109.46995 * 210.00117 * 14 12 10 17 17 H 1.48502 * 109.46959 * 329.99965 * 14 12 10 18 18 S 1.66954 * 127.30806 * 94.99966 * 4 3 2 19 19 O 1.42105 * 107.11405 * 290.91370 * 18 4 3 20 20 O 1.42099 * 107.11453 * 65.62502 * 18 4 3 21 21 H 1.09000 * 109.47498 * 59.99668 * 1 2 3 22 22 H 1.09005 * 109.47354 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46945 * 299.99799 * 1 2 3 24 24 H 1.09001 * 109.46945 * 240.00201 * 2 1 3 25 25 H 1.09000 * 109.47498 * 120.00332 * 2 1 3 26 26 H 1.09001 * 109.46905 * 60.00177 * 3 2 1 27 27 H 1.09000 * 109.47063 * 300.00597 * 3 2 1 28 28 H 1.08996 * 109.54392 * 320.54685 * 5 4 3 29 29 H 1.08997 * 109.54545 * 80.72829 * 5 4 3 30 30 H 1.08997 * 109.77135 * 84.96179 * 6 5 4 31 31 H 1.09002 * 109.76892 * 205.69943 * 6 5 4 32 32 H 1.09002 * 109.47344 * 34.86246 * 8 7 6 33 33 H 1.08999 * 109.47111 * 154.85897 * 8 7 6 34 34 H 1.09001 * 109.46528 * 299.99866 * 9 8 7 35 35 H 1.08999 * 109.47279 * 59.99752 * 9 8 7 36 36 H 0.96998 * 120.00263 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3974 1.3397 1.1652 6 6 5.7792 1.8847 0.7893 7 7 6.0348 1.5469 -0.6277 8 6 7.3197 1.2647 -1.2725 9 6 7.9779 2.5796 -1.6954 10 6 9.2993 2.2892 -2.3592 11 1 9.6362 1.2689 -2.4681 12 6 10.0781 3.3261 -2.8274 13 7 9.6681 4.5685 -2.6943 14 14 11.7157 2.9662 -3.6508 15 1 11.5080 2.7920 -5.1108 16 1 12.6477 4.0980 -3.4150 17 1 12.2934 1.7223 -3.0812 18 16 4.5163 1.5585 -1.3239 19 8 4.3839 0.3493 -2.0587 20 8 4.3236 2.8494 -1.8856 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 1.9563 -0.8899 28 1 3.9879 1.9222 1.9904 29 1 4.4870 0.2956 1.4650 30 1 5.7959 2.9670 0.9170 31 1 6.5404 1.4271 1.4213 32 1 7.9706 0.7414 -0.5720 33 1 7.1560 0.6411 -2.1514 34 1 7.3270 3.1027 -2.3960 35 1 8.1416 3.2031 -0.8165 36 1 10.2158 5.2980 -3.0241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379799276.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:18 Heat of formation + Delta-G solvation = -96.814660 kcal Electronic energy + Delta-G solvation = -18437.822483 eV Core-core repulsion = 15468.873080 eV Total energy + Delta-G solvation = -2968.949402 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.96024 -38.24385 -37.22158 -36.94301 -35.38627 -34.04888 -31.83288 -29.33086 -26.62720 -26.36156 -23.90588 -22.95496 -22.25103 -20.19130 -18.75111 -18.16015 -17.99422 -17.17798 -16.68032 -16.51780 -15.98286 -15.60522 -15.27036 -14.93463 -14.75814 -14.35635 -13.95620 -13.68119 -13.43727 -13.30626 -13.28908 -13.16254 -12.92472 -12.72215 -12.68082 -12.37149 -12.24153 -12.18352 -11.84510 -11.69077 -11.48686 -11.32747 -10.57997 -10.20828 -9.81492 -8.21000 -6.34531 -0.64239 1.41652 1.44074 1.54948 1.74934 2.09494 2.41924 3.10807 3.12559 3.17260 3.77559 4.00156 4.05516 4.17315 4.29200 4.39709 4.58080 4.66177 4.68518 4.70801 4.85087 4.86767 4.90996 4.94775 4.97782 5.21228 5.29421 5.35915 5.42432 5.52185 5.62601 5.69141 5.85578 6.18399 6.83547 7.35642 8.91414 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.049446 B = 0.004547 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.142846 B = 6155.921228 C = 6237.420500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.151 3.849 4 N -0.997 5.997 5 C 0.078 3.922 6 C 0.058 3.942 7 N -1.003 6.003 8 C 0.176 3.824 9 C 0.005 3.995 10 C -0.546 4.546 11 H 0.074 0.926 12 C -0.003 4.003 13 N -0.934 5.934 14 Si 0.972 3.028 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.255 1.255 18 S 2.760 3.240 19 O -1.017 7.017 20 O -1.026 7.026 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.043 0.957 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.139 0.861 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.100 0.900 33 H 0.065 0.935 34 H -0.024 1.024 35 H 0.005 0.995 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.128 -8.962 12.883 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C 0.028 3.972 4 N -0.844 5.844 5 C -0.047 4.047 6 C -0.068 4.068 7 N -0.848 5.848 8 C 0.052 3.948 9 C -0.034 4.034 10 C -0.584 4.584 11 H 0.092 0.908 12 C -0.201 4.201 13 N -0.574 5.574 14 Si 0.796 3.204 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.178 1.178 18 S 2.771 3.229 19 O -0.999 6.999 20 O -1.008 7.008 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.157 0.843 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.118 0.882 33 H 0.083 0.917 34 H -0.005 1.005 35 H 0.024 0.976 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.338 -8.751 11.811 21.245 hybrid contribution 1.018 0.434 -0.458 1.198 sum -14.320 -8.317 11.354 20.078 Atomic orbital electron populations 1.21709 0.93423 1.02698 1.02776 1.22062 0.97448 0.96698 1.02707 1.21427 0.73717 0.97563 1.04510 1.57255 1.14122 1.91247 1.21727 1.22542 0.86086 1.05133 0.90920 1.22857 0.98537 1.02461 0.82910 1.57426 1.20752 1.87165 1.19422 1.21145 0.80415 0.96828 0.96363 1.19477 0.94674 0.93917 0.95295 1.21614 1.04271 0.93921 1.38636 0.90812 1.26070 1.02660 0.94724 0.96611 1.70141 1.39863 0.99817 1.47608 0.85349 0.78170 0.78362 0.78559 1.20203 1.20788 1.17836 1.02759 0.74271 0.73249 0.72585 1.93516 1.86369 1.48269 1.71778 1.93573 1.85957 1.43943 1.77313 0.92771 0.91857 0.90634 0.93811 0.90038 0.86463 0.91390 0.84307 0.87928 0.90562 0.84416 0.88220 0.91710 1.00511 0.97642 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.11 16 2 C -0.15 -2.55 6.26 30.59 0.19 -2.36 16 3 C 0.15 2.80 6.45 86.38 0.56 3.35 16 4 N -1.00 -24.15 3.43 -513.81 -1.76 -25.91 16 5 C 0.08 1.29 7.20 86.32 0.62 1.91 16 6 C 0.06 1.36 7.15 86.18 0.62 1.97 16 7 N -1.00 -35.89 3.46 -512.02 -1.77 -37.67 16 8 C 0.18 7.34 6.46 86.38 0.56 7.90 16 9 C 0.01 0.28 5.30 29.85 0.16 0.44 16 10 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 11 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 12 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 13 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 14 Si 0.97 44.47 29.54 68.60 2.03 46.49 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 18 S 2.76 103.22 6.17 -56.49 -0.35 102.87 16 19 O -1.02 -43.00 18.17 -128.11 -2.33 -45.32 16 20 O -1.03 -47.88 18.17 -128.11 -2.33 -50.21 16 21 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 23 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 28 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 33 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 34 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.98 315.03 -1.08 -83.06 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.04 Total: 3.39 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 4.11 Total: -18.50 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -3.25 Total: -121.79 kcal Atomic # 8 Polarization: -90.88 SS G_CDS: -4.66 Total: -95.53 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 103.22 SS G_CDS: -0.35 Total: 102.87 kcal Total: -81.98 -1.08 -83.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379799276.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.756 kcal (2) G-P(sol) polarization free energy of solvation -81.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds