Wall clock time and date at job start Mon Mar 30 2020 05:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.88762 * 2 1 4 4 C 1.55134 * 111.19423 * 236.06472 * 2 1 3 5 5 N 1.47423 * 104.72558 * 279.19262 * 4 2 1 6 6 S 1.65599 * 125.64823 * 155.81424 * 5 4 2 7 7 O 1.42099 * 106.39969 * 156.15353 * 6 5 4 8 8 O 1.42100 * 106.40412 * 23.23359 * 6 5 4 9 9 C 1.76198 * 107.21634 * 269.68858 * 6 5 4 10 10 H 1.07999 * 120.00296 * 0.02562 * 9 6 5 11 11 C 1.37885 * 119.99739 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 6 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 6 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 C 1.47023 * 108.69828 * 335.55115 * 5 4 2 18 18 C 1.54319 * 107.27501 * 1.28718 * 17 5 4 19 19 C 1.52995 * 110.71936 * 263.82896 * 18 17 5 20 20 C 1.53004 * 110.71981 * 140.55599 * 18 17 5 21 21 N 1.46901 * 109.46908 * 61.45598 * 20 18 17 22 22 H 1.09000 * 109.47367 * 296.11945 * 1 2 3 23 23 H 1.09004 * 109.47471 * 56.12394 * 1 2 3 24 24 H 1.09004 * 109.47258 * 176.11971 * 1 2 3 25 25 H 1.09002 * 110.49574 * 160.34804 * 4 2 1 26 26 H 1.09003 * 110.34006 * 37.95422 * 4 2 1 27 27 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 28 28 H 1.08998 * 109.88037 * 120.70644 * 17 5 4 29 29 H 1.09001 * 109.88316 * 241.71015 * 17 5 4 30 30 H 1.09006 * 109.47385 * 58.54974 * 19 18 17 31 31 H 1.09006 * 109.47257 * 178.54541 * 19 18 17 32 32 H 1.08999 * 109.47611 * 298.54260 * 19 18 17 33 33 H 1.09004 * 109.46537 * 181.45458 * 20 18 17 34 34 H 1.08994 * 109.47213 * 301.45144 * 20 18 17 35 35 H 1.00903 * 110.99287 * 179.97438 * 21 20 18 36 36 H 1.00894 * 110.99976 * 303.95176 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0908 -0.8075 -1.2000 5 7 2.0139 -2.2162 -0.7725 6 16 1.9318 -3.5276 -1.7804 7 8 2.4265 -4.6347 -1.0395 8 8 2.4847 -3.1143 -3.0225 9 6 0.2255 -3.8506 -2.0780 10 1 -0.5296 -3.2271 -1.6226 11 6 -0.1457 -4.8995 -2.8924 12 7 -1.4194 -5.1403 -3.1150 13 14 1.1604 -5.9783 -3.6796 14 1 1.5397 -5.4132 -4.9994 15 1 2.3562 -6.0290 -2.8006 16 1 0.6234 -7.3505 -3.8645 17 6 2.0285 -2.2643 0.6969 18 6 2.0861 -0.8075 1.2025 19 6 3.5279 -0.3976 1.5094 20 6 1.1965 -0.6263 2.4341 21 7 1.6778 -1.4936 3.5176 22 1 -0.3634 0.4524 0.9227 23 1 -0.3634 0.5728 -0.8532 24 1 -0.3634 -1.0253 -0.0695 25 1 3.1253 -0.5272 -1.3985 26 1 1.4764 -0.6458 -2.0858 27 1 -1.6805 -5.8780 -3.6883 28 1 1.1219 -2.7475 1.0610 29 1 2.9049 -2.8136 1.0411 30 1 4.1353 -0.5048 0.6106 31 1 3.5479 0.6410 1.8397 32 1 3.9277 -1.0369 2.2965 33 1 1.2321 0.4138 2.7581 34 1 0.1700 -0.8938 2.1833 35 1 1.1064 -1.3918 4.3430 36 1 1.7155 -2.4570 3.2200 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379961517.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:13 Heat of formation + Delta-G solvation = -84.741175 kcal Electronic energy + Delta-G solvation = -19380.260551 eV Core-core repulsion = 16411.834694 eV Total energy + Delta-G solvation = -2968.425857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.56973 -35.64204 -34.55068 -34.42265 -33.03504 -31.77594 -30.39124 -27.16299 -26.38370 -24.84237 -24.50362 -21.06445 -18.77717 -18.58977 -17.57564 -16.74201 -15.77353 -15.27434 -15.07953 -14.84697 -14.45529 -14.06207 -13.43084 -13.34341 -12.90178 -12.86044 -12.61469 -12.37949 -12.05534 -11.95239 -11.76691 -11.70373 -11.40117 -11.04735 -10.65071 -10.62243 -10.54415 -10.46626 -10.26242 -10.16360 -9.81062 -9.21410 -9.11866 -8.64265 -8.17752 -6.81095 -5.34110 1.99533 3.06207 3.16934 3.26234 3.94705 4.23617 4.41455 4.57869 4.71274 4.76295 5.01982 5.24844 5.39023 5.42625 5.48053 5.62901 5.72058 5.75725 5.85247 5.88295 6.04542 6.08149 6.13165 6.16499 6.21864 6.26851 6.33682 6.49682 6.58582 6.77672 7.09223 7.27920 7.41748 7.48593 8.21537 8.70172 10.31322 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030184 B = 0.007361 C = 0.007206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.418822 B = 3802.719357 C = 3884.707231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.084 0.916 4 C 0.130 3.870 5 N -1.009 6.009 6 S 2.690 3.310 7 O -1.005 7.005 8 O -1.007 7.007 9 C -1.015 5.015 10 H 0.120 0.880 11 C 0.153 3.847 12 N -0.824 5.824 13 Si 0.800 3.200 14 H -0.246 1.246 15 H -0.220 1.220 16 H -0.254 1.254 17 C 0.136 3.864 18 C -0.067 4.067 19 C -0.126 4.126 20 C 0.074 3.926 21 N -0.852 5.852 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.280 0.720 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.338 0.662 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.813 9.806 9.307 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.102 0.898 4 C 0.004 3.996 5 N -0.846 5.846 6 S 2.794 3.206 7 O -0.995 6.995 8 O -0.997 6.997 9 C -1.149 5.149 10 H 0.138 0.862 11 C -0.066 4.066 12 N -0.453 5.453 13 Si 0.620 3.380 14 H -0.170 1.170 15 H -0.142 1.142 16 H -0.178 1.178 17 C 0.010 3.990 18 C -0.069 4.069 19 C -0.184 4.184 20 C -0.057 4.057 21 N -0.382 5.382 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.150 0.850 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.096 9.597 8.799 13.981 hybrid contribution -1.402 -0.925 -0.475 1.745 sum 3.695 8.672 8.324 12.575 Atomic orbital electron populations 1.21830 0.94336 1.03034 1.01272 1.22440 0.96226 0.98510 0.94195 0.89767 1.21932 1.00110 0.80577 0.96954 1.58569 1.91106 1.19333 1.15549 1.01001 0.77228 0.70600 0.71783 1.93453 1.82886 1.50153 1.73033 1.93402 1.81285 1.82096 1.42947 1.30554 1.16444 1.25497 1.42432 0.86170 1.24429 0.95713 0.94499 0.91987 1.69991 1.15742 1.27742 1.31836 0.87894 0.84028 0.82310 0.83807 1.16980 1.14173 1.17828 1.21603 1.01140 0.95881 0.80405 1.21673 0.96378 0.94986 0.93830 1.21678 0.94231 1.00963 1.01495 1.21863 0.95892 0.97544 0.90398 1.58730 1.59413 1.12396 1.07657 0.92607 0.92409 0.91548 0.92116 0.90557 0.90932 0.92410 0.91595 0.92840 0.92954 0.91431 0.91016 0.94438 0.84992 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.12 37.15 0.30 -1.62 16 2 C -0.09 -1.22 3.03 -88.35 -0.27 -1.48 16 3 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 4 C 0.13 2.16 6.14 -2.41 -0.01 2.14 16 5 N -1.01 -20.12 3.68 -111.29 -0.41 -20.53 16 6 S 2.69 68.76 4.44 -107.50 -0.48 68.28 16 7 O -1.00 -27.42 15.60 -57.17 -0.89 -28.31 16 8 O -1.01 -27.41 16.42 -57.17 -0.94 -28.35 16 9 C -1.01 -28.59 10.29 30.60 0.31 -28.27 16 10 H 0.12 3.41 8.06 -52.49 -0.42 2.99 16 11 C 0.15 4.44 5.47 -17.82 -0.10 4.34 16 12 N -0.82 -23.92 13.96 55.43 0.77 -23.15 16 13 Si 0.80 20.81 26.54 -169.99 -4.51 16.30 16 14 H -0.25 -6.26 7.11 56.52 0.40 -5.85 16 15 H -0.22 -5.83 5.60 56.52 0.32 -5.52 16 16 H -0.25 -6.05 7.11 56.52 0.40 -5.65 16 17 C 0.14 2.28 4.90 -3.07 -0.02 2.26 16 18 C -0.07 -0.87 0.57 -152.68 -0.09 -0.95 16 19 C -0.13 -1.51 8.27 37.16 0.31 -1.21 16 20 C 0.07 0.82 4.80 -3.82 -0.02 0.80 16 21 N -0.85 -8.86 9.06 -10.37 -0.09 -8.96 16 22 H 0.05 0.61 6.66 -51.93 -0.35 0.26 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 1.04 7.91 -51.93 -0.41 0.63 16 25 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 26 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 27 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.06 0.97 7.61 -51.93 -0.40 0.57 16 29 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 30 H 0.05 0.67 7.42 -51.93 -0.39 0.28 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.82 7.80 -51.93 -0.40 0.42 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.43 6.41 -51.93 -0.33 0.10 16 35 H 0.34 2.84 9.08 -39.29 -0.36 2.49 16 36 H 0.34 3.75 7.86 -39.30 -0.31 3.44 16 LS Contribution 294.29 15.07 4.43 4.43 Total: -1.00 -32.56 294.29 -7.18 -39.75 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.49 Total: 4.52 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 0.42 Total: -23.99 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.27 Total: -52.64 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -1.83 Total: -56.66 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.51 Total: 16.30 kcal Atomic # 16 Polarization: 68.76 SS G_CDS: -0.48 Total: 68.28 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.56 -7.18 -39.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379961517.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.993 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds