Wall clock time and date at job start Mon Mar 30 2020 05:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.88637 * 2 1 4 4 C 1.54906 * 111.00474 * 123.91868 * 2 1 3 5 5 N 1.47426 * 104.83190 * 81.06524 * 4 2 1 6 6 S 1.65596 * 125.65308 * 204.17259 * 5 4 2 7 7 O 1.42107 * 106.39968 * 23.48868 * 6 5 4 8 8 O 1.42097 * 106.40564 * 156.40434 * 6 5 4 9 9 C 1.76198 * 107.22273 * 269.95217 * 6 5 4 10 10 H 1.08002 * 119.99775 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00506 * 180.02562 * 9 6 5 12 12 N 1.31510 * 120.00337 * 180.02562 * 11 9 6 13 13 Si 1.86802 * 119.99876 * 359.97438 * 11 9 6 14 14 H 1.48498 * 109.47263 * 90.00398 * 13 11 9 15 15 H 1.48498 * 109.47370 * 210.00425 * 13 11 9 16 16 H 1.48508 * 109.46830 * 330.00571 * 13 11 9 17 17 C 1.47029 * 108.70146 * 24.13151 * 5 4 2 18 18 C 1.54322 * 107.26856 * 358.93932 * 17 5 4 19 19 C 1.53002 * 110.71881 * 96.17391 * 18 17 5 20 20 C 1.52996 * 110.71752 * 219.44450 * 18 17 5 21 21 N 1.46901 * 109.47309 * 293.52441 * 20 18 17 22 22 H 1.09002 * 109.47153 * 183.88134 * 1 2 3 23 23 H 1.09001 * 109.46832 * 63.88325 * 1 2 3 24 24 H 1.09004 * 109.47261 * 303.88306 * 1 2 3 25 25 H 1.09006 * 110.37188 * 199.90392 * 4 2 1 26 26 H 1.09003 * 110.37004 * 322.22903 * 4 2 1 27 27 H 0.96998 * 120.00217 * 179.97438 * 12 11 9 28 28 H 1.09002 * 109.87860 * 239.52264 * 17 5 4 29 29 H 1.09001 * 109.88100 * 118.35470 * 17 5 4 30 30 H 1.09001 * 109.47186 * 306.47285 * 19 18 17 31 31 H 1.08997 * 109.47432 * 66.47755 * 19 18 17 32 32 H 1.09002 * 109.46710 * 186.47547 * 19 18 17 33 33 H 1.09004 * 109.47346 * 53.52778 * 20 18 17 34 34 H 1.09001 * 109.47404 * 173.52349 * 20 18 17 35 35 H 1.00905 * 110.99710 * 180.02562 * 21 20 18 36 36 H 1.00899 * 110.99651 * 303.95377 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8070 1.2000 5 7 2.0139 -2.2161 0.7726 6 16 1.9299 -3.5274 1.7805 7 8 1.3961 -3.0550 3.0098 8 8 1.3358 -4.5754 1.0269 9 6 3.5838 -4.0328 2.1178 10 1 4.4124 -3.4957 1.6804 11 6 3.8202 -5.1145 2.9393 12 7 5.0547 -5.4914 3.1915 13 14 2.3870 -6.0440 3.6953 14 1 1.9732 -7.1415 2.7847 15 1 2.8013 -6.6148 5.0022 16 1 1.2471 -5.1144 3.9002 17 6 2.0286 -2.2644 -0.6968 18 6 2.0862 -0.8075 -1.2025 19 6 3.5280 -0.3976 -1.5093 20 6 1.1966 -0.6264 -2.4340 21 7 1.7473 -1.4011 -3.5540 22 1 -0.3633 -1.0253 0.0696 23 1 -0.3633 0.4524 -0.9228 24 1 -0.3634 0.5729 0.8532 25 1 3.1182 -0.5238 1.4023 26 1 1.4672 -0.6468 2.0835 27 1 5.2210 -6.2522 3.7698 28 1 1.1219 -2.7476 -1.0609 29 1 2.9064 -2.8112 -1.0409 30 1 4.1535 -0.5888 -0.6374 31 1 3.8979 -0.9762 -2.3558 32 1 3.5597 0.6642 -1.7534 33 1 0.1894 -0.9778 -2.2096 34 1 1.1613 0.4288 -2.7047 35 1 1.1772 -1.2976 -4.3802 36 1 2.7036 -1.1385 -3.7397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379961523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:16 Heat of formation + Delta-G solvation = -82.742219 kcal Electronic energy + Delta-G solvation = -19309.873694 eV Core-core repulsion = 16341.534518 eV Total energy + Delta-G solvation = -2968.339176 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.55731 -35.58097 -34.67828 -34.36341 -32.97894 -31.73085 -30.35565 -27.30024 -26.33055 -25.01568 -24.29332 -21.09432 -18.68310 -18.57765 -17.47580 -16.70649 -15.97946 -15.46816 -14.92406 -14.77054 -14.35468 -13.83493 -13.54299 -13.40358 -13.27397 -12.83102 -12.55851 -12.30787 -12.04181 -11.93621 -11.76674 -11.65991 -11.34951 -11.00316 -10.65286 -10.62694 -10.52700 -10.36386 -10.30490 -10.19605 -9.77260 -9.16581 -9.05492 -8.68442 -8.08543 -6.75884 -5.28291 2.06560 3.09901 3.21137 3.29945 3.99148 4.29805 4.38129 4.62238 4.70053 4.80412 4.91670 5.22739 5.29979 5.44050 5.48956 5.52652 5.59525 5.79490 5.84079 5.86023 5.95753 6.09797 6.11326 6.16947 6.23916 6.25895 6.37449 6.50449 6.54393 6.85824 7.09195 7.33428 7.39472 7.53918 8.27473 8.75601 10.36775 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031750 B = 0.007186 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.691149 B = 3895.569984 C = 4082.595004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.084 0.916 4 C 0.126 3.874 5 N -1.012 6.012 6 S 2.692 3.308 7 O -1.006 7.006 8 O -1.006 7.006 9 C -1.015 5.015 10 H 0.120 0.880 11 C 0.153 3.847 12 N -0.825 5.825 13 Si 0.800 3.200 14 H -0.246 1.246 15 H -0.255 1.255 16 H -0.220 1.220 17 C 0.148 3.852 18 C -0.067 4.067 19 C -0.141 4.141 20 C 0.077 3.923 21 N -0.850 5.850 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.280 0.720 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.026 0.974 35 H 0.338 0.662 36 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 12.049 -9.946 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.102 0.898 4 C 0.000 4.000 5 N -0.849 5.849 6 S 2.795 3.205 7 O -0.997 6.997 8 O -0.997 6.997 9 C -1.150 5.150 10 H 0.138 0.862 11 C -0.066 4.066 12 N -0.454 5.454 13 Si 0.620 3.380 14 H -0.170 1.170 15 H -0.179 1.179 16 H -0.142 1.142 17 C 0.022 3.978 18 C -0.069 4.069 19 C -0.198 4.198 20 C -0.054 4.054 21 N -0.380 5.380 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.150 0.850 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.994 10.846 -9.029 15.332 hybrid contribution 0.545 0.419 -0.123 0.698 sum -5.448 11.264 -9.152 15.502 Atomic orbital electron populations 1.21808 0.94619 1.02537 1.01317 1.22393 0.96046 0.98493 0.94487 0.89810 1.21911 1.00442 0.80764 0.96880 1.58583 1.91461 1.18860 1.15985 1.00932 0.76932 0.70952 0.71649 1.93448 1.81521 1.81091 1.43611 1.93400 1.79680 1.54200 1.72405 1.30579 1.16309 1.25666 1.42404 0.86186 1.24431 0.96175 0.94088 0.91944 1.69991 1.19698 1.24212 1.31527 0.87888 0.84216 0.84373 0.81506 1.16973 1.17876 1.14185 1.21485 1.01924 0.95152 0.79264 1.21660 0.95518 0.95781 0.93970 1.21834 0.95226 1.00266 1.02486 1.21844 0.98510 0.94591 0.90479 1.58717 1.07061 1.62766 1.09492 0.92030 0.92559 0.92421 0.92000 0.90339 0.90973 0.91524 0.91733 0.91509 0.91990 0.92988 0.90350 0.95551 0.84955 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.13 37.16 0.30 -1.43 16 2 C -0.09 -1.19 3.03 -88.48 -0.27 -1.46 16 3 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 4 C 0.13 2.10 6.25 -2.53 -0.02 2.09 16 5 N -1.01 -20.65 3.68 -111.41 -0.41 -21.06 16 6 S 2.69 70.16 4.44 -107.50 -0.48 69.68 16 7 O -1.01 -27.69 15.34 -57.17 -0.88 -28.57 16 8 O -1.01 -28.04 16.41 -57.17 -0.94 -28.98 16 9 C -1.02 -29.35 10.29 30.60 0.31 -29.03 16 10 H 0.12 3.51 8.06 -52.49 -0.42 3.09 16 11 C 0.15 4.52 5.47 -17.82 -0.10 4.42 16 12 N -0.82 -24.40 13.96 55.43 0.77 -23.63 16 13 Si 0.80 21.14 26.54 -169.99 -4.51 16.63 16 14 H -0.25 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.25 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.22 -5.90 5.61 56.52 0.32 -5.58 16 17 C 0.15 2.60 5.67 -3.06 -0.02 2.59 16 18 C -0.07 -0.87 0.57 -152.68 -0.09 -0.96 16 19 C -0.14 -1.63 8.08 37.16 0.30 -1.33 16 20 C 0.08 0.82 4.64 -3.83 -0.02 0.81 16 21 N -0.85 -8.65 9.39 -10.37 -0.10 -8.74 16 22 H 0.06 0.86 7.91 -51.93 -0.41 0.45 16 23 H 0.06 0.55 6.76 -51.93 -0.35 0.20 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.98 7.80 -51.93 -0.41 0.57 16 26 H 0.08 1.33 7.69 -51.93 -0.40 0.93 16 27 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.07 1.21 7.77 -51.93 -0.40 0.81 16 29 H 0.06 1.19 7.84 -51.93 -0.41 0.78 16 30 H 0.07 0.88 7.57 -51.93 -0.39 0.48 16 31 H 0.06 0.67 6.49 -51.93 -0.34 0.34 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.89 6.67 -51.93 -0.35 0.54 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.34 2.72 9.08 -39.29 -0.36 2.36 16 36 H 0.34 3.09 6.98 -39.29 -0.27 2.82 16 LS Contribution 293.10 15.07 4.42 4.42 Total: -1.00 -33.62 293.10 -7.12 -40.74 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.41 Total: 3.82 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 0.41 Total: -24.31 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.27 Total: -53.44 kcal Atomic # 8 Polarization: -55.73 SS G_CDS: -1.82 Total: -57.55 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.51 Total: 16.63 kcal Atomic # 16 Polarization: 70.16 SS G_CDS: -0.48 Total: 69.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.62 -7.12 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379961523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.998 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds