Wall clock time and date at job start Mon Mar 30 2020 05:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.88637 * 2 1 4 4 C 1.54906 * 111.00474 * 123.91868 * 2 1 3 5 5 N 1.47426 * 104.83190 * 81.06524 * 4 2 1 6 6 S 1.65596 * 125.65308 * 204.17259 * 5 4 2 7 7 O 1.42107 * 106.39968 * 23.48868 * 6 5 4 8 8 O 1.42097 * 106.40564 * 156.40434 * 6 5 4 9 9 C 1.76198 * 107.22273 * 269.95217 * 6 5 4 10 10 H 1.08002 * 119.99775 * 359.97438 * 9 6 5 11 11 C 1.37874 * 120.00506 * 180.02562 * 9 6 5 12 12 N 1.31510 * 120.00337 * 180.02562 * 11 9 6 13 13 Si 1.86802 * 119.99876 * 359.97438 * 11 9 6 14 14 H 1.48498 * 109.47263 * 90.00398 * 13 11 9 15 15 H 1.48498 * 109.47370 * 210.00425 * 13 11 9 16 16 H 1.48508 * 109.46830 * 330.00571 * 13 11 9 17 17 C 1.47029 * 108.70146 * 24.13151 * 5 4 2 18 18 C 1.54322 * 107.26856 * 358.93932 * 17 5 4 19 19 C 1.53002 * 110.71881 * 96.17391 * 18 17 5 20 20 C 1.52996 * 110.71752 * 219.44450 * 18 17 5 21 21 N 1.46901 * 109.47309 * 293.52441 * 20 18 17 22 22 H 1.09002 * 109.47153 * 183.88134 * 1 2 3 23 23 H 1.09001 * 109.46832 * 63.88325 * 1 2 3 24 24 H 1.09004 * 109.47261 * 303.88306 * 1 2 3 25 25 H 1.09006 * 110.37188 * 199.90392 * 4 2 1 26 26 H 1.09003 * 110.37004 * 322.22903 * 4 2 1 27 27 H 0.96998 * 120.00217 * 179.97438 * 12 11 9 28 28 H 1.09002 * 109.87860 * 239.52264 * 17 5 4 29 29 H 1.09001 * 109.88100 * 118.35470 * 17 5 4 30 30 H 1.09001 * 109.47186 * 306.47285 * 19 18 17 31 31 H 1.08997 * 109.47432 * 66.47755 * 19 18 17 32 32 H 1.09002 * 109.46710 * 186.47547 * 19 18 17 33 33 H 1.09004 * 109.47346 * 53.52778 * 20 18 17 34 34 H 1.09001 * 109.47404 * 173.52349 * 20 18 17 35 35 H 1.00905 * 110.99710 * 180.02562 * 21 20 18 36 36 H 1.00899 * 110.99651 * 303.95377 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8070 1.2000 5 7 2.0139 -2.2161 0.7726 6 16 1.9299 -3.5274 1.7805 7 8 1.3961 -3.0550 3.0098 8 8 1.3358 -4.5754 1.0269 9 6 3.5838 -4.0328 2.1178 10 1 4.4124 -3.4957 1.6804 11 6 3.8202 -5.1145 2.9393 12 7 5.0547 -5.4914 3.1915 13 14 2.3870 -6.0440 3.6953 14 1 1.9732 -7.1415 2.7847 15 1 2.8013 -6.6148 5.0022 16 1 1.2471 -5.1144 3.9002 17 6 2.0286 -2.2644 -0.6968 18 6 2.0862 -0.8075 -1.2025 19 6 3.5280 -0.3976 -1.5093 20 6 1.1966 -0.6264 -2.4340 21 7 1.7473 -1.4011 -3.5540 22 1 -0.3633 -1.0253 0.0696 23 1 -0.3633 0.4524 -0.9228 24 1 -0.3634 0.5729 0.8532 25 1 3.1182 -0.5238 1.4023 26 1 1.4672 -0.6468 2.0835 27 1 5.2210 -6.2522 3.7698 28 1 1.1219 -2.7476 -1.0609 29 1 2.9064 -2.8112 -1.0409 30 1 4.1535 -0.5888 -0.6374 31 1 3.8979 -0.9762 -2.3558 32 1 3.5597 0.6642 -1.7534 33 1 0.1894 -0.9778 -2.2096 34 1 1.1613 0.4288 -2.7047 35 1 1.1772 -1.2976 -4.3802 36 1 2.7036 -1.1385 -3.7397 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379961523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:16 Heat of formation + Delta-G solvation = -111.104892 kcal Electronic energy + Delta-G solvation = -19311.103592 eV Core-core repulsion = 16341.534518 eV Total energy + Delta-G solvation = -2969.569073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72139 -37.73596 -36.53343 -35.75679 -35.21643 -32.94183 -31.34210 -28.59317 -28.45954 -26.11080 -25.42136 -22.30703 -20.74323 -19.68213 -19.38835 -18.66254 -17.35640 -16.87359 -16.54943 -16.24717 -15.65842 -15.46878 -15.06458 -14.85407 -14.72130 -14.54837 -13.79402 -13.58789 -13.47439 -13.41050 -13.13421 -13.01328 -12.80593 -12.73937 -12.71094 -12.59342 -12.17363 -11.70442 -11.58638 -11.37952 -11.34604 -11.22369 -11.19994 -9.73884 -9.42210 -9.00550 -7.56328 0.06084 1.00285 1.10256 1.17173 1.85495 2.37296 2.48213 3.32982 3.37645 3.57406 3.78053 4.01829 4.14729 4.24607 4.34949 4.36970 4.60739 4.65081 4.74397 4.79066 4.84695 4.94569 4.99703 5.03735 5.12503 5.19957 5.24170 5.28899 5.41632 5.45472 5.56542 5.75175 5.97223 6.38952 6.49146 6.74735 8.17697 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031750 B = 0.007186 C = 0.006857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.691149 B = 3895.569984 C = 4082.595004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 H 0.121 0.879 4 C 0.110 3.890 5 N -1.013 6.013 6 S 2.711 3.289 7 O -1.024 7.024 8 O -1.029 7.029 9 C -1.040 5.040 10 H 0.101 0.899 11 C 0.107 3.893 12 N -0.853 5.853 13 Si 0.824 3.176 14 H -0.239 1.239 15 H -0.214 1.214 16 H -0.230 1.230 17 C 0.138 3.862 18 C -0.058 4.058 19 C -0.140 4.140 20 C 0.082 3.918 21 N -0.865 5.865 22 H 0.033 0.967 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.292 0.708 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.351 0.649 36 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 13.919 -10.986 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 H 0.139 0.861 4 C -0.015 4.015 5 N -0.852 5.852 6 S 2.813 3.187 7 O -1.014 7.014 8 O -1.020 7.020 9 C -1.173 5.173 10 H 0.120 0.880 11 C -0.109 4.109 12 N -0.483 5.483 13 Si 0.640 3.360 14 H -0.162 1.162 15 H -0.135 1.135 16 H -0.152 1.152 17 C 0.013 3.987 18 C -0.061 4.061 19 C -0.197 4.197 20 C -0.049 4.049 21 N -0.398 5.398 22 H 0.052 0.948 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.165 0.835 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.809 12.697 -10.056 17.570 hybrid contribution 0.858 -0.103 0.129 0.874 sum -5.951 12.594 -9.927 17.105 Atomic orbital electron populations 1.21848 0.93911 1.01287 1.03353 1.22438 0.96579 0.99373 0.91773 0.86067 1.22313 1.01213 0.79153 0.98844 1.58186 1.90977 1.19202 1.16875 1.00074 0.75450 0.71508 0.71643 1.93410 1.81256 1.81583 1.45191 1.93358 1.79525 1.56280 1.72791 1.31092 1.17895 1.25870 1.42407 0.88043 1.25186 0.98276 0.94954 0.92503 1.70008 1.20823 1.25174 1.32332 0.87515 0.81682 0.83640 0.83137 1.16240 1.13536 1.15229 1.21748 1.00602 0.98847 0.77467 1.21682 0.97224 0.92052 0.95100 1.21838 0.93678 1.02402 1.01770 1.21773 0.97378 0.96375 0.89413 1.58668 1.07839 1.63215 1.10116 0.94809 0.89614 0.91487 0.91457 0.90966 0.89749 0.92558 0.93421 0.93619 0.91557 0.89748 0.90980 0.92468 0.83492 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.13 71.98 0.59 -2.50 16 2 C -0.08 -1.83 3.03 -9.40 -0.03 -1.86 16 3 H 0.12 1.93 8.04 -2.39 -0.02 1.91 16 4 C 0.11 3.58 6.25 86.85 0.54 4.12 16 5 N -1.01 -41.82 3.68 -506.40 -1.87 -43.68 16 6 S 2.71 144.31 4.44 -56.49 -0.25 144.06 16 7 O -1.02 -57.13 15.34 -128.00 -1.96 -59.10 16 8 O -1.03 -58.49 16.41 -128.00 -2.10 -60.59 16 9 C -1.04 -61.99 10.29 67.73 0.70 -61.29 16 10 H 0.10 6.21 8.06 -2.91 -0.02 6.19 16 11 C 0.11 6.45 5.47 84.65 0.46 6.91 16 12 N -0.85 -51.10 13.96 21.45 0.30 -50.80 16 13 Si 0.82 42.70 26.54 68.60 1.82 44.52 16 14 H -0.24 -12.04 7.11 99.48 0.71 -11.34 16 15 H -0.21 -9.61 7.11 99.48 0.71 -8.91 16 16 H -0.23 -12.26 5.61 99.48 0.56 -11.70 16 17 C 0.14 4.89 5.67 86.73 0.49 5.38 16 18 C -0.06 -1.38 0.57 -51.00 -0.03 -1.41 16 19 C -0.14 -2.87 8.08 71.98 0.58 -2.29 16 20 C 0.08 1.48 4.64 86.30 0.40 1.88 16 21 N -0.87 -15.47 9.39 -186.72 -1.75 -17.22 16 22 H 0.03 0.89 7.91 -2.39 -0.02 0.87 16 23 H 0.09 1.31 6.76 -2.39 -0.02 1.29 16 24 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.07 2.10 7.80 -2.38 -0.02 2.08 16 26 H 0.07 2.42 7.69 -2.39 -0.02 2.41 16 27 H 0.29 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.06 2.07 7.77 -2.39 -0.02 2.06 16 29 H 0.05 1.81 7.84 -2.39 -0.02 1.79 16 30 H 0.04 1.13 7.57 -2.39 -0.02 1.12 16 31 H 0.07 1.30 6.49 -2.39 -0.02 1.28 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.43 6.67 -2.39 -0.02 1.41 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.35 4.72 9.08 -89.69 -0.81 3.90 16 36 H 0.35 5.39 6.98 -89.69 -0.63 4.76 16 Total: -1.00 -74.06 293.10 -2.61 -76.67 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -0.50 Total: 17.21 kcal Atomic # 6 Polarization: -54.76 SS G_CDS: 3.70 Total: -51.06 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.32 Total: -111.71 kcal Atomic # 8 Polarization: -115.63 SS G_CDS: -4.06 Total: -119.69 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.82 Total: 44.52 kcal Atomic # 16 Polarization: 144.31 SS G_CDS: -0.25 Total: 144.06 kcal Total: -74.06 -2.61 -76.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379961523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.436 kcal (2) G-P(sol) polarization free energy of solvation -74.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds