Wall clock time and date at job start Mon Mar 30 2020 05:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.49938 * 2 1 4 4 C 1.53618 * 109.43089 * 120.22595 * 2 1 3 5 5 N 1.46933 * 108.54451 * 174.72058 * 4 2 1 6 6 S 1.65593 * 120.63124 * 126.36588 * 5 4 2 7 7 C 1.81399 * 104.45079 * 269.72420 * 6 5 4 8 8 O 1.42104 * 104.27905 * 153.65490 * 6 5 4 9 9 O 1.42102 * 104.27718 * 25.79270 * 6 5 4 10 10 C 1.46925 * 118.73827 * 306.09839 * 5 4 2 11 11 C 1.53188 * 108.77713 * 53.85318 * 10 5 4 12 12 C 1.53039 * 109.31484 * 305.36542 * 11 10 5 13 13 H 1.08993 * 109.46391 * 301.34755 * 12 11 10 14 14 N 1.46505 * 109.46192 * 181.36832 * 12 11 10 15 15 C 1.36938 * 119.99429 * 85.00222 * 14 12 11 16 16 H 1.07995 * 120.00514 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99488 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99747 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00363 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46984 * 89.99977 * 19 17 15 21 21 H 1.48499 * 109.47125 * 210.00423 * 19 17 15 22 22 H 1.48501 * 109.46865 * 330.00293 * 19 17 15 23 23 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46873 * 300.06584 * 1 2 3 25 25 H 1.09002 * 109.47069 * 60.06350 * 1 2 3 26 26 H 1.09004 * 109.74455 * 54.98590 * 4 2 1 27 27 H 1.08998 * 109.66779 * 294.41121 * 4 2 1 28 28 H 1.09001 * 109.47190 * 299.99797 * 7 6 5 29 29 H 1.09004 * 109.47089 * 59.99930 * 7 6 5 30 30 H 1.09004 * 109.47568 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.59077 * 173.64530 * 10 5 4 32 32 H 1.09010 * 109.58668 * 294.07074 * 10 5 4 33 33 H 1.08997 * 109.50055 * 65.31627 * 11 10 5 34 34 H 1.09005 * 109.50163 * 185.41750 * 11 10 5 35 35 H 0.97002 * 120.00234 * 265.00249 * 14 12 11 36 36 H 0.97000 * 119.99846 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7293 1.2517 5 7 3.5047 -0.8296 1.1693 6 16 4.4588 -0.2860 2.4087 7 6 4.7932 1.4483 1.9955 8 8 5.6451 -1.0613 2.3038 9 8 3.6256 -0.3734 3.5566 10 6 4.1053 -1.4268 -0.0313 11 6 3.5708 -0.6947 -1.2663 12 6 2.0408 -0.7228 -1.2486 13 1 1.6966 -1.7569 -1.2358 14 7 1.5264 -0.0519 -2.4452 15 6 1.3950 -0.7480 -3.6171 16 1 1.6708 -1.7913 -3.6594 17 6 0.9081 -0.1122 -4.7510 18 7 0.7813 -0.7814 -5.8774 19 14 0.4317 1.6925 -4.6781 20 1 1.6102 2.5297 -5.0177 21 1 -0.6595 1.9560 -5.6502 22 1 -0.0345 2.0264 -3.3082 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5149 0.8894 25 1 -0.3633 0.5129 -0.8906 26 1 1.6084 -1.7287 1.2980 27 1 1.7631 -0.1669 2.1431 28 1 5.3053 1.5007 1.0347 29 1 3.8524 1.9956 1.9361 30 1 5.4225 1.8911 2.7676 31 1 5.1896 -1.3248 0.0132 32 1 3.8375 -2.4819 -0.0876 33 1 3.9158 0.3391 -1.2541 34 1 3.9333 -1.1892 -2.1676 35 1 1.2790 0.8852 -2.4073 36 1 0.4408 -0.3372 -6.6696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380158216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:33 Heat of formation + Delta-G solvation = -58.900291 kcal Electronic energy + Delta-G solvation = -18973.477752 eV Core-core repulsion = 16006.172440 eV Total energy + Delta-G solvation = -2967.305312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.78740 -37.24205 -36.03537 -34.78421 -32.70074 -31.58305 -29.69395 -29.59083 -26.45089 -24.55589 -22.14906 -21.64950 -19.92306 -18.90026 -17.85597 -17.36878 -16.37913 -16.19404 -15.04301 -14.64005 -14.36431 -13.86719 -13.79279 -13.50143 -13.38380 -13.31900 -12.70320 -12.54747 -12.45438 -12.20316 -12.16379 -11.74621 -11.48519 -11.37590 -11.22587 -11.06819 -10.88023 -10.64265 -10.51371 -10.25386 -9.80471 -9.61744 -8.99082 -8.87984 -7.30507 -5.80901 -3.16306 0.16980 2.54520 3.32086 3.34747 3.41348 3.76748 4.02488 4.52243 4.54504 4.74358 4.79036 4.97172 5.16366 5.28219 5.30613 5.50357 5.53077 5.58079 5.65219 5.77368 5.91533 5.96229 6.04875 6.09052 6.25527 6.36900 6.43870 6.50687 6.67476 6.80862 6.93205 7.95522 8.38293 9.16708 9.89265 10.09027 11.37493 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034876 B = 0.005595 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.661294 B = 5003.377432 C = 5156.291798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 H 0.068 0.932 4 C 0.131 3.869 5 N -0.997 5.997 6 S 2.611 3.389 7 C -0.675 4.675 8 O -0.959 6.959 9 O -0.961 6.961 10 C 0.123 3.877 11 C -0.153 4.153 12 C 0.190 3.810 13 H 0.058 0.942 14 N -0.746 5.746 15 C -0.241 4.241 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.934 5.934 19 Si 0.883 3.117 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.277 1.277 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.360 0.640 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 3.902 16.174 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.137 4.137 3 H 0.086 0.914 4 C 0.005 3.995 5 N -0.835 5.835 6 S 2.704 3.296 7 C -0.825 4.825 8 O -0.949 6.949 9 O -0.951 6.951 10 C -0.003 4.003 11 C -0.195 4.195 12 C 0.080 3.920 13 H 0.076 0.924 14 N -0.388 5.388 15 C -0.371 4.371 16 H 0.108 0.892 17 C -0.191 4.191 18 N -0.581 5.581 19 Si 0.714 3.286 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.204 1.204 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.193 0.807 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.936 3.214 16.721 18.032 hybrid contribution -0.388 2.045 -0.689 2.192 sum 5.548 5.259 16.031 17.761 Atomic orbital electron populations 1.21703 0.94263 1.02309 1.01537 1.21910 0.96508 0.99772 0.95496 0.91400 1.21598 0.78028 1.01723 0.98164 1.57665 1.16137 1.74830 1.34827 1.04818 0.73838 0.77265 0.73686 1.30609 1.11959 1.27532 1.12368 1.93596 1.48649 1.66438 1.86238 1.93589 1.67291 1.86570 1.47651 1.21524 0.97268 0.97864 0.83611 1.22663 0.99804 1.00234 0.96764 1.20134 0.90626 0.96132 0.85124 0.92388 1.42785 1.78192 1.10131 1.07711 1.19063 1.36289 0.95830 0.85947 0.89182 1.24667 1.01410 0.97382 0.95645 1.69699 1.52139 1.35648 1.00659 0.86580 0.78166 0.86895 0.76981 1.21271 1.21827 1.20361 0.92440 0.93577 0.91434 0.90658 0.89563 0.85298 0.85436 0.85882 0.89804 0.90927 0.92494 0.90129 0.80716 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.03 37.16 0.34 -1.61 16 2 C -0.12 -1.60 2.47 -90.27 -0.22 -1.82 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.13 1.55 5.63 -3.49 -0.02 1.53 16 5 N -1.00 -11.73 3.21 -113.27 -0.36 -12.10 16 6 S 2.61 28.86 6.06 -107.50 -0.65 28.21 16 7 C -0.68 -5.24 10.99 101.05 1.11 -4.13 16 8 O -0.96 -13.41 16.73 -57.54 -0.96 -14.37 16 9 O -0.96 -13.15 16.71 -57.54 -0.96 -14.11 16 10 C 0.12 1.54 6.31 -3.71 -0.02 1.51 16 11 C -0.15 -2.31 5.66 -26.61 -0.15 -2.46 16 12 C 0.19 3.25 2.19 -67.88 -0.15 3.10 16 13 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 14 N -0.75 -16.18 4.21 -53.38 -0.22 -16.41 16 15 C -0.24 -6.42 10.41 -15.06 -0.16 -6.58 16 16 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 17 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 18 N -0.93 -28.57 13.97 55.49 0.78 -27.80 16 19 Si 0.88 21.35 27.74 -169.99 -4.71 16.64 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 1.10 7.36 -51.93 -0.38 0.72 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.09 0.91 7.09 -51.93 -0.37 0.54 16 28 H 0.13 0.93 8.14 -51.92 -0.42 0.50 16 29 H 0.13 0.88 8.14 -51.92 -0.42 0.46 16 30 H 0.12 0.75 8.14 -51.92 -0.42 0.32 16 31 H 0.08 0.95 7.10 -51.93 -0.37 0.58 16 32 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.36 7.75 5.37 -40.82 -0.22 7.53 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -33.60 300.33 -7.53 -41.12 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.58 Total: 4.71 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 0.63 Total: -10.42 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.19 Total: -56.30 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -1.92 Total: -28.49 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: 28.86 SS G_CDS: -0.65 Total: 28.21 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.60 -7.53 -41.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380158216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.778 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds