Wall clock time and date at job start Mon Mar 30 2020 05:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.49938 * 2 1 4 4 C 1.53618 * 109.43089 * 120.22595 * 2 1 3 5 5 N 1.46933 * 108.54451 * 174.72058 * 4 2 1 6 6 S 1.65593 * 120.63124 * 126.36588 * 5 4 2 7 7 C 1.81399 * 104.45079 * 269.72420 * 6 5 4 8 8 O 1.42104 * 104.27905 * 153.65490 * 6 5 4 9 9 O 1.42102 * 104.27718 * 25.79270 * 6 5 4 10 10 C 1.46925 * 118.73827 * 306.09839 * 5 4 2 11 11 C 1.53188 * 108.77713 * 53.85318 * 10 5 4 12 12 C 1.53039 * 109.31484 * 305.36542 * 11 10 5 13 13 H 1.08993 * 109.46391 * 301.34755 * 12 11 10 14 14 N 1.46505 * 109.46192 * 181.36832 * 12 11 10 15 15 C 1.36938 * 119.99429 * 85.00222 * 14 12 11 16 16 H 1.07995 * 120.00514 * 359.97438 * 15 14 12 17 17 C 1.38817 * 119.99488 * 180.02562 * 15 14 12 18 18 N 1.31625 * 119.99747 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00363 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46984 * 89.99977 * 19 17 15 21 21 H 1.48499 * 109.47125 * 210.00423 * 19 17 15 22 22 H 1.48501 * 109.46865 * 330.00293 * 19 17 15 23 23 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46873 * 300.06584 * 1 2 3 25 25 H 1.09002 * 109.47069 * 60.06350 * 1 2 3 26 26 H 1.09004 * 109.74455 * 54.98590 * 4 2 1 27 27 H 1.08998 * 109.66779 * 294.41121 * 4 2 1 28 28 H 1.09001 * 109.47190 * 299.99797 * 7 6 5 29 29 H 1.09004 * 109.47089 * 59.99930 * 7 6 5 30 30 H 1.09004 * 109.47568 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.59077 * 173.64530 * 10 5 4 32 32 H 1.09010 * 109.58668 * 294.07074 * 10 5 4 33 33 H 1.08997 * 109.50055 * 65.31627 * 11 10 5 34 34 H 1.09005 * 109.50163 * 185.41750 * 11 10 5 35 35 H 0.97002 * 120.00234 * 265.00249 * 14 12 11 36 36 H 0.97000 * 119.99846 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0411 -0.7293 1.2517 5 7 3.5047 -0.8296 1.1693 6 16 4.4588 -0.2860 2.4087 7 6 4.7932 1.4483 1.9955 8 8 5.6451 -1.0613 2.3038 9 8 3.6256 -0.3734 3.5566 10 6 4.1053 -1.4268 -0.0313 11 6 3.5708 -0.6947 -1.2663 12 6 2.0408 -0.7228 -1.2486 13 1 1.6966 -1.7569 -1.2358 14 7 1.5264 -0.0519 -2.4452 15 6 1.3950 -0.7480 -3.6171 16 1 1.6708 -1.7913 -3.6594 17 6 0.9081 -0.1122 -4.7510 18 7 0.7813 -0.7814 -5.8774 19 14 0.4317 1.6925 -4.6781 20 1 1.6102 2.5297 -5.0177 21 1 -0.6595 1.9560 -5.6502 22 1 -0.0345 2.0264 -3.3082 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5149 0.8894 25 1 -0.3633 0.5129 -0.8906 26 1 1.6084 -1.7287 1.2980 27 1 1.7631 -0.1669 2.1431 28 1 5.3053 1.5007 1.0347 29 1 3.8524 1.9956 1.9361 30 1 5.4225 1.8911 2.7676 31 1 5.1896 -1.3248 0.0132 32 1 3.8375 -2.4819 -0.0876 33 1 3.9158 0.3391 -1.2541 34 1 3.9333 -1.1892 -2.1676 35 1 1.2790 0.8852 -2.4073 36 1 0.4408 -0.3372 -6.6696 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380158216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:32 Heat of formation + Delta-G solvation = -84.737252 kcal Electronic energy + Delta-G solvation = -18974.598127 eV Core-core repulsion = 16006.172440 eV Total energy + Delta-G solvation = -2968.425687 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97470 -38.19885 -36.99886 -36.30826 -34.16469 -33.14072 -31.24633 -30.23968 -27.58042 -26.13309 -23.58002 -22.93698 -21.22693 -19.95955 -19.39876 -18.57226 -17.25814 -17.12914 -16.72389 -16.01346 -15.65761 -15.15841 -14.91981 -14.82800 -14.41072 -14.14173 -13.94231 -13.81925 -13.65503 -13.28424 -13.15414 -12.96857 -12.88093 -12.77475 -12.62637 -12.36385 -12.07460 -11.93523 -11.85225 -11.75366 -11.62489 -11.07123 -10.87229 -9.91422 -9.23266 -7.97588 -5.29369 -0.65911 1.39259 1.42738 1.50352 1.66377 2.52031 2.97195 3.18841 3.34373 3.55060 3.69626 4.01236 4.07634 4.12570 4.23667 4.24685 4.45341 4.48766 4.68417 4.74578 4.86674 4.92572 4.94651 4.98609 5.10565 5.21703 5.33061 5.36412 5.50732 5.57680 5.72845 5.83816 6.26770 7.14079 7.91216 8.10278 9.24386 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034876 B = 0.005595 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.661294 B = 5003.377432 C = 5156.291798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.086 0.914 4 C 0.132 3.868 5 N -1.000 6.000 6 S 2.618 3.382 7 C -0.656 4.656 8 O -0.994 6.994 9 O -0.989 6.989 10 C 0.130 3.870 11 C -0.145 4.145 12 C 0.180 3.820 13 H 0.037 0.963 14 N -0.746 5.746 15 C -0.219 4.219 16 H 0.054 0.946 17 C -0.068 4.068 18 N -0.988 5.988 19 Si 0.953 3.047 20 H -0.281 1.281 21 H -0.303 1.303 22 H -0.247 1.247 23 H 0.049 0.951 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.072 0.928 27 H 0.109 0.891 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.365 0.635 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 6.479 18.541 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.104 0.896 4 C 0.007 3.993 5 N -0.836 5.836 6 S 2.715 3.285 7 C -0.809 4.809 8 O -0.984 6.984 9 O -0.980 6.980 10 C 0.004 3.996 11 C -0.186 4.186 12 C 0.072 3.928 13 H 0.055 0.945 14 N -0.389 5.389 15 C -0.350 4.350 16 H 0.072 0.928 17 C -0.258 4.258 18 N -0.640 5.640 19 Si 0.781 3.219 20 H -0.208 1.208 21 H -0.230 1.230 22 H -0.171 1.171 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.198 0.802 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.407 5.751 19.173 21.018 hybrid contribution -0.478 1.178 -1.360 1.862 sum 5.929 6.929 17.813 20.011 Atomic orbital electron populations 1.21691 0.94304 1.01979 1.01789 1.21837 0.96439 1.00381 0.94143 0.89591 1.21601 0.78046 1.01807 0.97873 1.57605 1.16182 1.75560 1.34266 1.04472 0.72634 0.78567 0.72782 1.30412 1.13673 1.23034 1.13787 1.93553 1.49600 1.68811 1.86471 1.93551 1.67868 1.87685 1.48895 1.21380 0.98065 0.97324 0.82820 1.22483 0.97948 1.01155 0.97031 1.20396 0.91936 0.95292 0.85165 0.94457 1.42757 1.78479 1.10209 1.07473 1.18999 1.33774 0.94553 0.87668 0.92778 1.25469 1.02715 1.02363 0.95294 1.69895 1.54615 1.37837 1.01607 0.85442 0.77452 0.80926 0.78113 1.20774 1.22994 1.17142 0.93197 0.90475 0.93908 0.90925 0.87323 0.84035 0.83571 0.83575 0.88269 0.91401 0.91089 0.92774 0.80158 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.03 71.98 0.65 -2.89 16 2 C -0.11 -2.66 2.47 -10.57 -0.03 -2.68 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.13 2.77 5.63 86.50 0.49 3.26 16 5 N -1.00 -21.03 3.21 -512.28 -1.65 -22.68 16 6 S 2.62 50.52 6.06 -56.49 -0.34 50.18 16 7 C -0.66 -6.94 10.99 113.37 1.25 -5.70 16 8 O -0.99 -25.98 16.73 -127.65 -2.14 -28.11 16 9 O -0.99 -24.60 16.71 -127.65 -2.13 -26.73 16 10 C 0.13 3.07 6.31 86.36 0.55 3.61 16 11 C -0.14 -4.22 5.66 30.67 0.17 -4.04 16 12 C 0.18 6.02 2.19 45.02 0.10 6.12 16 13 H 0.04 1.39 8.08 -2.39 -0.02 1.37 16 14 N -0.75 -31.85 4.21 -322.80 -1.36 -33.21 16 15 C -0.22 -11.89 10.41 84.03 0.87 -11.02 16 16 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.99 -62.60 13.97 21.65 0.30 -62.30 16 19 Si 0.95 44.02 27.74 68.60 1.90 45.92 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.25 -10.04 6.52 99.48 0.65 -9.39 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.30 7.36 -2.39 -0.02 1.28 16 26 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.11 1.86 7.09 -2.39 -0.02 1.84 16 28 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 2.07 7.10 -2.39 -0.02 2.06 16 32 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.36 14.89 5.37 -92.71 -0.50 14.39 16 36 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -74.68 300.33 -0.39 -75.07 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.51 Total: 18.61 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 4.52 Total: -16.75 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -2.70 Total: -118.19 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -4.27 Total: -54.84 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.90 Total: 45.92 kcal Atomic # 16 Polarization: 50.52 SS G_CDS: -0.34 Total: 50.18 kcal Total: -74.68 -0.39 -75.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380158216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.671 kcal (2) G-P(sol) polarization free energy of solvation -74.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds