Wall clock time and date at job start Mon Mar 30 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 111.00188 * 2 1 4 4 C 1.50697 * 109.47322 * 66.03901 * 3 2 1 5 5 H 1.07996 * 120.00159 * 359.73284 * 4 3 2 6 6 C 1.37875 * 119.99693 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00463 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99835 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46968 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47191 * 119.99994 * 8 6 4 11 11 H 1.48497 * 109.47326 * 240.00320 * 8 6 4 12 12 C 1.38299 * 111.00129 * 236.03991 * 2 1 3 13 13 N 1.32372 * 119.84659 * 68.43200 * 12 2 1 14 14 C 1.31886 * 121.80261 * 179.71014 * 13 12 2 15 15 C 1.38399 * 121.27301 * 0.56630 * 14 13 12 16 16 C 1.38284 * 119.53975 * 359.72101 * 15 14 13 17 17 C 1.40208 * 118.34231 * 0.02562 * 16 15 14 18 18 C 1.46793 * 120.63394 * 179.97438 * 17 16 15 19 19 C 1.35196 * 119.99840 * 315.11483 * 18 17 16 20 20 C 1.41681 * 120.00154 * 347.09675 * 19 18 17 21 21 O 1.21658 * 120.00078 * 353.72915 * 20 19 18 22 22 O 1.34943 * 119.99755 * 173.73703 * 20 19 18 23 23 H 1.09002 * 109.46563 * 54.92185 * 1 2 3 24 24 H 1.09006 * 109.46642 * 174.91999 * 1 2 3 25 25 H 1.09002 * 109.46906 * 294.91802 * 1 2 3 26 26 H 1.09003 * 109.46426 * 306.04093 * 3 2 1 27 27 H 1.08992 * 109.47449 * 186.04479 * 3 2 1 28 28 H 0.97000 * 120.00253 * 180.02562 * 7 6 4 29 29 H 1.08000 * 119.36073 * 180.26460 * 14 13 12 30 30 H 1.08005 * 120.22923 * 179.74686 * 15 14 13 31 31 H 1.08005 * 120.82741 * 179.97438 * 16 15 14 32 32 H 1.07997 * 119.99431 * 135.11296 * 18 17 16 33 33 H 1.08004 * 119.99476 * 167.09424 * 19 18 17 34 34 H 0.96703 * 113.99613 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0705 1.5130 2.0467 6 6 2.0268 3.3495 1.5282 7 7 2.7112 4.0022 0.6144 8 14 1.5829 4.1871 3.1379 9 1 0.8166 3.2441 3.9916 10 1 2.8248 4.5947 3.8428 11 1 0.7550 5.3879 2.8593 12 6 1.9647 -0.7212 -1.0709 13 7 1.8068 -0.2637 -2.3029 14 6 2.2686 -0.9169 -3.3515 15 6 2.9330 -2.1228 -3.2112 16 6 3.1232 -2.6536 -1.9486 17 6 2.6296 -1.9419 -0.8460 18 6 2.8031 -2.4592 0.5168 19 6 2.5617 -3.7630 0.7807 20 6 1.8874 -4.5657 -0.1724 21 8 1.4250 -4.0584 -1.1768 22 8 1.7579 -5.8929 0.0342 23 1 -0.3632 0.5906 -0.8411 24 1 -0.3633 -1.0237 -0.0910 25 1 -0.3633 0.4330 0.9320 26 1 1.5612 1.9272 -0.8310 27 1 3.0797 1.3444 -0.1082 28 1 2.9858 4.9183 0.7763 29 1 2.1213 -0.5051 -4.3389 30 1 3.3007 -2.6455 -4.0819 31 1 3.6384 -3.5934 -1.8151 32 1 3.1234 -1.7982 1.3084 33 1 2.8831 -4.1926 1.7180 34 1 1.2839 -6.3561 -0.6701 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383352771.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:11 Heat of formation + Delta-G solvation = -12.844665 kcal Electronic energy + Delta-G solvation = -19482.292108 eV Core-core repulsion = 16381.539966 eV Total energy + Delta-G solvation = -3100.752142 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63356 -39.62200 -36.39483 -36.06472 -34.15472 -32.61852 -31.17690 -29.58788 -27.24227 -25.42628 -25.00252 -23.04812 -22.31854 -20.53514 -19.42637 -18.21660 -17.06244 -16.52741 -16.23032 -15.96892 -15.32152 -14.91934 -14.58027 -14.09237 -13.83099 -13.49095 -13.18399 -13.03108 -12.61968 -12.53844 -12.02758 -11.71806 -11.50107 -11.28463 -11.00180 -10.75051 -10.68241 -10.54203 -10.05671 -10.00695 -9.41449 -9.01150 -8.94099 -8.48392 -8.08072 -7.62580 -6.04217 -4.06797 0.62479 1.59681 1.94540 3.11770 3.30201 3.37606 3.41831 3.43882 4.17068 4.35929 4.58708 4.76708 5.08269 5.13038 5.29032 5.31587 5.43351 5.54230 5.69071 5.90702 6.07541 6.12687 6.22596 6.32622 6.41506 6.47642 6.56190 6.68512 6.83086 7.27090 7.41596 7.77838 7.94018 7.94656 8.10335 8.44475 8.52148 9.00098 9.57066 11.06601 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.005624 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.305913 B = 4977.084987 C = 5658.673514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.499 5.499 3 C 0.201 3.799 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.343 3.657 13 N -0.514 5.514 14 C 0.125 3.875 15 C -0.202 4.202 16 C -0.006 4.006 17 C -0.126 4.126 18 C 0.071 3.929 19 C -0.250 4.250 20 C 0.508 3.492 21 O -0.512 6.512 22 O -0.515 6.515 23 H 0.031 0.969 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.011 0.989 27 H 0.027 0.973 28 H 0.261 0.739 29 H 0.148 0.852 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.142 0.858 34 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -16.527 -3.515 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.223 5.223 3 C 0.078 3.922 4 C -0.550 4.550 5 H 0.084 0.916 6 C -0.145 4.145 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.115 3.885 13 N -0.225 5.225 14 C -0.035 4.035 15 C -0.222 4.222 16 C -0.032 4.032 17 C -0.130 4.130 18 C 0.052 3.948 19 C -0.269 4.269 20 C 0.355 3.645 21 O -0.403 6.403 22 O -0.325 6.325 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.029 0.971 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.165 0.835 30 H 0.146 0.854 31 H 0.138 0.862 32 H 0.174 0.826 33 H 0.160 0.840 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 0.529 -15.429 -3.149 15.756 hybrid contribution -0.292 -0.172 -0.234 0.412 sum 0.237 -15.602 -3.383 15.966 Atomic orbital electron populations 1.22139 0.86074 0.99361 1.02171 1.60231 1.08599 1.19596 1.33878 1.19784 0.95230 0.79720 0.97502 1.21156 1.35138 0.97125 1.01587 0.91649 1.24978 0.95230 0.97232 0.97013 1.69983 1.38122 1.11391 1.33905 0.86429 0.78141 0.79373 0.83385 1.19617 1.21012 1.21078 1.20345 0.91175 0.89164 0.87788 1.67958 1.20067 1.34688 0.99831 1.22623 0.92176 0.91335 0.97321 1.21777 1.04245 0.98588 0.97588 1.21308 0.94231 0.96092 0.91610 1.19586 1.03696 0.96001 0.93692 1.22596 0.84547 0.92819 0.94871 1.21205 1.09760 0.94059 1.01834 1.19929 0.78306 0.80746 0.85479 1.91043 1.47017 1.73121 1.29156 1.85100 1.73186 1.22211 1.51964 0.95064 0.93839 0.90154 0.97087 0.95483 0.92902 0.83494 0.85385 0.86158 0.82623 0.83982 0.74168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 9.19 60.07 0.55 1.58 16 2 N -0.50 -11.17 4.12 -182.11 -0.75 -11.92 16 3 C 0.20 5.35 4.39 -4.98 -0.02 5.33 16 4 C -0.51 -14.18 8.59 -34.44 -0.30 -14.48 16 5 H 0.07 1.77 7.09 -52.49 -0.37 1.39 16 6 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 7 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.34 7.11 5.26 -155.09 -0.82 6.29 16 13 N -0.51 -10.64 9.78 -12.12 -0.12 -10.76 16 14 C 0.13 2.08 11.16 -17.47 -0.20 1.88 16 15 C -0.20 -2.92 10.08 -39.51 -0.40 -3.32 16 16 C -0.01 -0.10 6.88 -38.82 -0.27 -0.36 16 17 C -0.13 -2.19 4.42 -104.73 -0.46 -2.66 16 18 C 0.07 1.05 9.31 -37.21 -0.35 0.70 16 19 C -0.25 -3.13 9.85 -39.35 -0.39 -3.51 16 20 C 0.51 6.63 7.21 32.05 0.23 6.86 16 21 O -0.51 -8.15 12.98 -19.39 -0.25 -8.40 16 22 O -0.51 -5.19 13.54 -41.16 -0.56 -5.75 16 23 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 24 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 25 H 0.08 1.66 7.00 -51.93 -0.36 1.29 16 26 H 0.01 0.33 7.98 -51.93 -0.41 -0.09 16 27 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 30 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.12 1.55 7.32 -52.48 -0.38 1.17 16 32 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.40 2.43 8.98 45.56 0.41 2.83 16 LS Contribution 299.47 15.07 4.51 4.51 Total: -1.00 -33.48 299.47 -7.16 -40.64 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.21 Total: 1.42 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.51 Total: -0.17 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.13 Total: -48.61 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.81 Total: -14.15 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.48 -7.16 -40.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383352771.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.799 kcal (2) G-P(sol) polarization free energy of solvation -33.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds