Wall clock time and date at job start Mon Mar 30 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46900 * 111.00188 * 2 1 4 4 C 1.50697 * 109.47322 * 66.03901 * 3 2 1 5 5 H 1.07996 * 120.00159 * 359.73284 * 4 3 2 6 6 C 1.37875 * 119.99693 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00463 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99835 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46968 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47191 * 119.99994 * 8 6 4 11 11 H 1.48497 * 109.47326 * 240.00320 * 8 6 4 12 12 C 1.38299 * 111.00129 * 236.03991 * 2 1 3 13 13 N 1.32372 * 119.84659 * 68.43200 * 12 2 1 14 14 C 1.31886 * 121.80261 * 179.71014 * 13 12 2 15 15 C 1.38399 * 121.27301 * 0.56630 * 14 13 12 16 16 C 1.38284 * 119.53975 * 359.72101 * 15 14 13 17 17 C 1.40208 * 118.34231 * 0.02562 * 16 15 14 18 18 C 1.46793 * 120.63394 * 179.97438 * 17 16 15 19 19 C 1.35196 * 119.99840 * 315.11483 * 18 17 16 20 20 C 1.41681 * 120.00154 * 347.09675 * 19 18 17 21 21 O 1.21658 * 120.00078 * 353.72915 * 20 19 18 22 22 O 1.34943 * 119.99755 * 173.73703 * 20 19 18 23 23 H 1.09002 * 109.46563 * 54.92185 * 1 2 3 24 24 H 1.09006 * 109.46642 * 174.91999 * 1 2 3 25 25 H 1.09002 * 109.46906 * 294.91802 * 1 2 3 26 26 H 1.09003 * 109.46426 * 306.04093 * 3 2 1 27 27 H 1.08992 * 109.47449 * 186.04479 * 3 2 1 28 28 H 0.97000 * 120.00253 * 180.02562 * 7 6 4 29 29 H 1.08000 * 119.36073 * 180.26460 * 14 13 12 30 30 H 1.08005 * 120.22923 * 179.74686 * 15 14 13 31 31 H 1.08005 * 120.82741 * 179.97438 * 16 15 14 32 32 H 1.07997 * 119.99431 * 135.11296 * 18 17 16 33 33 H 1.08004 * 119.99476 * 167.09424 * 19 18 17 34 34 H 0.96703 * 113.99613 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0705 1.5130 2.0467 6 6 2.0268 3.3495 1.5282 7 7 2.7112 4.0022 0.6144 8 14 1.5829 4.1871 3.1379 9 1 0.8166 3.2441 3.9916 10 1 2.8248 4.5947 3.8428 11 1 0.7550 5.3879 2.8593 12 6 1.9647 -0.7212 -1.0709 13 7 1.8068 -0.2637 -2.3029 14 6 2.2686 -0.9169 -3.3515 15 6 2.9330 -2.1228 -3.2112 16 6 3.1232 -2.6536 -1.9486 17 6 2.6296 -1.9419 -0.8460 18 6 2.8031 -2.4592 0.5168 19 6 2.5617 -3.7630 0.7807 20 6 1.8874 -4.5657 -0.1724 21 8 1.4250 -4.0584 -1.1768 22 8 1.7579 -5.8929 0.0342 23 1 -0.3632 0.5906 -0.8411 24 1 -0.3633 -1.0237 -0.0910 25 1 -0.3633 0.4330 0.9320 26 1 1.5612 1.9272 -0.8310 27 1 3.0797 1.3444 -0.1082 28 1 2.9858 4.9183 0.7763 29 1 2.1213 -0.5051 -4.3389 30 1 3.3007 -2.6455 -4.0819 31 1 3.6384 -3.5934 -1.8151 32 1 3.1234 -1.7982 1.3084 33 1 2.8831 -4.1926 1.7180 34 1 1.2839 -6.3561 -0.6701 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383352771.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:11 Heat of formation + Delta-G solvation = -36.357905 kcal Electronic energy + Delta-G solvation = -19483.311718 eV Core-core repulsion = 16381.539966 eV Total energy + Delta-G solvation = -3101.771752 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.80734 -40.83925 -37.89830 -37.17167 -35.31717 -34.71075 -32.47813 -30.96211 -29.25293 -27.03339 -26.23739 -24.72061 -23.62660 -22.16779 -20.46303 -19.21658 -18.70866 -17.99686 -17.75628 -17.29906 -16.74706 -16.39978 -15.85934 -15.74901 -15.12874 -14.92393 -14.67844 -14.27290 -14.11929 -13.96689 -13.69036 -13.20999 -12.90372 -12.87758 -12.59383 -12.43824 -12.42120 -12.05325 -11.81934 -11.41786 -11.13422 -10.64907 -10.45982 -10.20494 -9.44303 -9.33347 -8.20651 -6.32492 -0.51532 0.30766 0.72814 1.43483 1.43940 1.58031 2.09563 2.40470 2.54555 2.85489 3.00552 3.13405 3.56118 3.87745 3.95593 4.16614 4.21016 4.48307 4.48440 4.56812 4.61303 4.76935 4.92551 4.97363 5.11568 5.15549 5.19617 5.27578 5.44179 5.58695 5.61993 5.72930 6.00983 6.04593 6.66773 6.81808 7.04791 7.10733 7.37456 8.91462 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025009 B = 0.005624 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.305913 B = 4977.084987 C = 5658.673514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.492 5.492 3 C 0.226 3.774 4 C -0.524 4.524 5 H 0.072 0.928 6 C 0.002 3.998 7 N -0.936 5.936 8 Si 0.976 3.024 9 H -0.258 1.258 10 H -0.277 1.277 11 H -0.281 1.281 12 C 0.292 3.708 13 N -0.556 5.556 14 C 0.105 3.895 15 C -0.184 4.184 16 C -0.010 4.010 17 C -0.120 4.120 18 C 0.039 3.961 19 C -0.218 4.218 20 C 0.511 3.489 21 O -0.542 6.542 22 O -0.503 6.503 23 H 0.012 0.988 24 H 0.061 0.939 25 H 0.078 0.922 26 H -0.031 1.031 27 H -0.006 1.006 28 H 0.265 0.735 29 H 0.172 0.828 30 H 0.171 0.829 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.174 0.826 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 -19.002 -2.622 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.215 5.215 3 C 0.101 3.899 4 C -0.562 4.562 5 H 0.090 0.910 6 C -0.196 4.196 7 N -0.576 5.576 8 Si 0.800 3.200 9 H -0.181 1.181 10 H -0.203 1.203 11 H -0.207 1.207 12 C 0.066 3.934 13 N -0.269 5.269 14 C -0.055 4.055 15 C -0.203 4.203 16 C -0.036 4.036 17 C -0.124 4.124 18 C 0.020 3.980 19 C -0.237 4.237 20 C 0.359 3.641 21 O -0.436 6.436 22 O -0.315 6.315 23 H 0.030 0.970 24 H 0.080 0.920 25 H 0.097 0.903 26 H -0.013 1.013 27 H 0.012 0.988 28 H 0.073 0.927 29 H 0.190 0.810 30 H 0.188 0.812 31 H 0.166 0.834 32 H 0.171 0.829 33 H 0.192 0.808 34 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 0.682 -17.962 -2.260 18.117 hybrid contribution -0.327 0.372 -0.626 0.798 sum 0.355 -17.591 -2.886 17.830 Atomic orbital electron populations 1.22064 0.85696 1.00036 1.01142 1.60082 1.09018 1.16730 1.35656 1.19255 0.92875 0.82019 0.95719 1.21465 1.35135 0.97679 1.01947 0.90976 1.25976 0.94823 0.97931 1.00905 1.70132 1.39299 1.11877 1.36319 0.85240 0.78078 0.78131 0.78571 1.18150 1.20302 1.20705 1.20427 0.94390 0.91098 0.87517 1.67786 1.21734 1.36493 1.00852 1.23129 0.92674 0.92371 0.97296 1.22234 1.01829 0.97323 0.98923 1.21688 0.93818 0.96853 0.91243 1.19834 1.02018 0.94741 0.95780 1.22531 0.87617 0.93986 0.93857 1.21491 1.06773 0.92820 1.02581 1.19984 0.77682 0.81575 0.84860 1.91043 1.48169 1.73931 1.30425 1.85057 1.73002 1.20688 1.52718 0.96960 0.91991 0.90327 1.01322 0.98817 0.92669 0.81048 0.81154 0.83360 0.82914 0.80814 0.71850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.49 9.19 127.69 1.17 3.66 16 2 N -0.49 -23.00 4.12 -730.06 -3.01 -26.01 16 3 C 0.23 12.79 4.39 85.56 0.38 13.17 16 4 C -0.52 -29.96 8.59 25.60 0.22 -29.74 16 5 H 0.07 3.94 7.09 -2.91 -0.02 3.92 16 6 C 0.00 0.10 5.46 84.65 0.46 0.56 16 7 N -0.94 -57.64 13.29 21.45 0.28 -57.36 16 8 Si 0.98 44.20 29.54 68.60 2.03 46.22 16 9 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.29 12.55 5.26 133.72 0.70 13.26 16 13 N -0.56 -24.02 9.78 -192.25 -1.88 -25.90 16 14 C 0.10 3.45 11.16 84.72 0.95 4.40 16 15 C -0.18 -4.92 10.08 22.32 0.23 -4.70 16 16 C -0.01 -0.29 6.88 22.76 0.16 -0.13 16 17 C -0.12 -4.15 4.42 -19.93 -0.09 -4.23 16 18 C 0.04 1.12 9.31 23.81 0.22 1.34 16 19 C -0.22 -4.82 9.85 22.42 0.22 -4.60 16 20 C 0.51 11.70 7.21 68.67 0.50 12.19 16 21 O -0.54 -15.96 12.98 19.32 0.25 -15.70 16 22 O -0.50 -8.13 13.54 -58.60 -0.79 -8.93 16 23 H 0.01 0.54 8.08 -2.39 -0.02 0.53 16 24 H 0.06 2.40 8.07 -2.38 -0.02 2.38 16 25 H 0.08 3.33 7.00 -2.39 -0.02 3.31 16 26 H -0.03 -1.98 7.98 -2.39 -0.02 -2.00 16 27 H -0.01 -0.39 8.05 -2.39 -0.02 -0.41 16 28 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.17 4.50 8.06 -2.91 -0.02 4.48 16 30 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 31 H 0.15 3.33 7.32 -2.91 -0.02 3.30 16 32 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 33 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.42 3.45 8.98 -74.06 -0.67 2.78 16 Total: -1.00 -75.74 299.47 2.45 -73.29 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.46 Total: 9.21 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 5.11 Total: 5.18 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -4.60 Total: -109.27 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.54 Total: -24.63 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -75.74 2.45 -73.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383352771.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.936 kcal (2) G-P(sol) polarization free energy of solvation -75.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds