Wall clock time and date at job start Mon Mar 30 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47302 * 121.44069 * 2 1 4 4 C 1.52836 * 109.26389 * 124.56669 * 3 2 1 5 5 C 1.52367 * 110.80924 * 64.46230 * 4 3 2 6 6 N 1.47298 * 109.52229 * 295.65502 * 5 4 3 7 7 C 1.46506 * 121.44179 * 235.41199 * 6 5 4 8 8 C 1.53002 * 109.47035 * 274.71876 * 7 6 5 9 9 C 1.52996 * 109.46969 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46861 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00200 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99569 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47227 * 90.00066 * 14 12 10 16 16 H 1.48500 * 109.46628 * 209.99752 * 14 12 10 17 17 H 1.48493 * 109.47109 * 329.99411 * 14 12 10 18 18 S 1.66766 * 121.44594 * 180.02562 * 2 1 3 19 19 O 1.42101 * 106.83044 * 109.62941 * 18 2 1 20 20 O 1.42100 * 106.89573 * 335.59083 * 18 2 1 21 21 H 1.09003 * 109.47189 * 269.97527 * 1 2 3 22 22 H 1.08996 * 109.47433 * 29.97855 * 1 2 3 23 23 H 1.09002 * 109.47201 * 149.98272 * 1 2 3 24 24 H 1.09007 * 109.50435 * 244.49953 * 3 2 1 25 25 H 1.08999 * 109.50876 * 4.62251 * 3 2 1 26 26 H 1.09000 * 109.23050 * 184.90477 * 4 3 2 27 27 H 1.08997 * 109.23283 * 304.31006 * 4 3 2 28 28 H 1.08997 * 109.41531 * 175.61354 * 5 4 3 29 29 H 1.09007 * 109.33881 * 55.64503 * 5 4 3 30 30 H 1.09004 * 109.47073 * 34.71558 * 7 6 5 31 31 H 1.09000 * 109.47212 * 154.71641 * 7 6 5 32 32 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 33 33 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 34 34 H 1.08992 * 109.47534 * 299.99582 * 9 8 7 35 35 H 1.08996 * 109.47134 * 60.00388 * 9 8 7 36 36 H 0.97002 * 119.99797 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2333 1.2567 0.0000 4 6 3.1947 1.2600 1.1881 5 6 4.2338 0.1546 1.0465 6 7 3.5661 -1.1575 1.0926 7 6 3.9622 -2.1830 2.0610 8 6 5.1381 -2.9860 1.5012 9 6 5.5522 -4.0566 2.5128 10 6 6.7100 -4.8479 1.9611 11 1 7.1101 -4.6112 0.9862 12 6 7.2578 -5.8748 2.7004 13 7 6.7702 -6.1633 3.8872 14 14 8.6934 -6.8552 2.0167 15 1 9.9694 -6.2138 2.4238 16 1 8.6442 -8.2408 2.5485 17 1 8.6076 -6.8904 0.5347 18 16 2.3350 -1.4227 -0.0006 19 8 2.9394 -1.5348 -1.2818 20 8 1.4941 -2.4212 0.5608 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5141 24 1 2.8005 1.3365 -0.9274 25 1 1.5494 2.1015 0.0828 26 1 3.6999 2.2245 1.2385 27 1 2.6303 1.1020 2.1071 28 1 4.9524 0.2262 1.8629 29 1 4.7519 0.2661 0.0940 30 1 4.2601 -1.7055 2.9945 31 1 3.1215 -2.8514 2.2469 32 1 4.8403 -3.4636 0.5677 33 1 5.9788 -2.3176 1.3152 34 1 5.8502 -3.5788 3.4460 35 1 4.7117 -4.7250 2.6990 36 1 7.1558 -6.8855 4.4075 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386740868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:22 Heat of formation + Delta-G solvation = -79.679859 kcal Electronic energy + Delta-G solvation = -18570.735230 eV Core-core repulsion = 15602.528848 eV Total energy + Delta-G solvation = -2968.206382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -37.95319 -37.02998 -36.14255 -35.67293 -33.72008 -32.12296 -30.38544 -27.37202 -26.42787 -24.75741 -22.80998 -21.88345 -20.26183 -18.64752 -17.60084 -17.25940 -16.27740 -15.98648 -15.59819 -14.94623 -14.55241 -14.29825 -14.25263 -13.86585 -13.36113 -13.06959 -12.66442 -12.34442 -12.25196 -12.08772 -11.99426 -11.86815 -11.56418 -11.43575 -11.08763 -11.01848 -10.80618 -10.71399 -10.51665 -9.69373 -9.56660 -9.23782 -9.16111 -8.63517 -8.31757 -5.96882 -3.98878 0.61464 2.72960 3.34997 3.37665 3.41135 3.45921 4.31196 4.41667 4.49520 4.51936 4.82272 4.96807 5.05253 5.23812 5.34771 5.38682 5.39051 5.51502 5.53101 5.65966 5.75225 5.87426 6.00171 6.03314 6.17149 6.26810 6.54321 6.73049 6.97440 7.12157 7.69309 7.82608 8.02656 8.45914 9.07757 9.65009 11.14477 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.039162 B = 0.004582 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.815954 B = 6109.754315 C = 6262.492678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -1.016 6.016 3 C 0.114 3.886 4 C -0.172 4.172 5 C 0.113 3.887 6 N -1.001 6.001 7 C 0.125 3.875 8 C -0.130 4.130 9 C 0.022 3.978 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 S 2.781 3.219 19 O -0.976 6.976 20 O -0.974 6.974 21 H 0.055 0.945 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.099 18.629 -5.251 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.857 5.857 3 C -0.012 4.012 4 C -0.212 4.212 5 C -0.013 4.013 6 N -0.843 5.843 7 C 0.001 3.999 8 C -0.170 4.170 9 C -0.016 4.016 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 S 2.790 3.210 19 O -0.958 6.958 20 O -0.958 6.958 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.085 0.915 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.296 17.686 -5.629 21.727 hybrid contribution 0.892 -0.186 -0.005 0.911 sum -10.403 17.500 -5.634 21.124 Atomic orbital electron populations 1.21362 0.77892 1.02705 1.01929 1.57852 1.14599 1.21914 1.91356 1.21589 0.94229 0.87147 0.98204 1.22440 0.98309 1.00658 0.99790 1.21428 0.95284 0.80632 1.03969 1.57732 1.51685 1.22034 1.52812 1.21664 0.99102 0.88403 0.90737 1.22117 0.96045 0.98369 1.00452 1.19070 0.96473 0.92458 0.93625 1.21248 1.15742 1.15714 1.03108 0.92639 1.25021 0.97233 0.97255 0.94943 1.69965 1.41689 1.30571 1.11309 0.86585 0.82715 0.79351 0.79317 1.20699 1.21224 1.19853 1.02401 0.72885 0.71850 0.73845 1.93632 1.76695 1.84926 1.40531 1.93599 1.66664 1.56847 1.78666 0.92608 0.91005 0.91467 0.90776 0.89328 0.88554 0.90056 0.88688 0.90976 0.90473 0.89665 0.93385 0.92637 0.96306 0.96265 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.94 10.45 59.84 0.63 1.57 16 2 N -1.02 -11.31 3.48 -121.24 -0.42 -11.73 16 3 C 0.11 0.91 6.42 -3.69 -0.02 0.89 16 4 C -0.17 -1.31 5.98 -27.14 -0.16 -1.47 16 5 C 0.11 1.22 6.40 -3.93 -0.03 1.19 16 6 N -1.00 -14.87 3.09 -114.13 -0.35 -15.23 16 7 C 0.12 2.17 5.78 -4.04 -0.02 2.15 16 8 C -0.13 -2.79 5.48 -26.73 -0.15 -2.94 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.43 16 10 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 11 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 14 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 S 2.78 44.04 5.90 -107.50 -0.63 43.41 16 19 O -0.98 -18.40 18.16 -57.11 -1.04 -19.43 16 20 O -0.97 -18.15 16.26 -57.11 -0.93 -19.08 16 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 23 H 0.07 0.62 7.96 -51.93 -0.41 0.20 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.48 7.95 -51.93 -0.41 0.07 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.94 7.95 -51.93 -0.41 0.53 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.09 1.56 7.12 -51.93 -0.37 1.19 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -35.64 307.51 -9.12 -44.76 By element: Atomic # 1 Polarization: -0.09 SS G_CDS: -5.79 Total: -5.88 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.30 Total: -12.03 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.04 Total: -53.46 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.97 Total: -38.51 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 44.04 SS G_CDS: -0.63 Total: 43.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.64 -9.12 -44.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386740868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.920 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds