Wall clock time and date at job start Mon Mar 30 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.47302 * 121.44069 * 2 1 4 4 C 1.52836 * 109.26389 * 124.56669 * 3 2 1 5 5 C 1.52367 * 110.80924 * 64.46230 * 4 3 2 6 6 N 1.47298 * 109.52229 * 295.65502 * 5 4 3 7 7 C 1.46506 * 121.44179 * 235.41199 * 6 5 4 8 8 C 1.53002 * 109.47035 * 274.71876 * 7 6 5 9 9 C 1.52996 * 109.46969 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46861 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37884 * 120.00200 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99569 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47227 * 90.00066 * 14 12 10 16 16 H 1.48500 * 109.46628 * 209.99752 * 14 12 10 17 17 H 1.48493 * 109.47109 * 329.99411 * 14 12 10 18 18 S 1.66766 * 121.44594 * 180.02562 * 2 1 3 19 19 O 1.42101 * 106.83044 * 109.62941 * 18 2 1 20 20 O 1.42100 * 106.89573 * 335.59083 * 18 2 1 21 21 H 1.09003 * 109.47189 * 269.97527 * 1 2 3 22 22 H 1.08996 * 109.47433 * 29.97855 * 1 2 3 23 23 H 1.09002 * 109.47201 * 149.98272 * 1 2 3 24 24 H 1.09007 * 109.50435 * 244.49953 * 3 2 1 25 25 H 1.08999 * 109.50876 * 4.62251 * 3 2 1 26 26 H 1.09000 * 109.23050 * 184.90477 * 4 3 2 27 27 H 1.08997 * 109.23283 * 304.31006 * 4 3 2 28 28 H 1.08997 * 109.41531 * 175.61354 * 5 4 3 29 29 H 1.09007 * 109.33881 * 55.64503 * 5 4 3 30 30 H 1.09004 * 109.47073 * 34.71558 * 7 6 5 31 31 H 1.09000 * 109.47212 * 154.71641 * 7 6 5 32 32 H 1.09004 * 109.46930 * 299.99770 * 8 7 6 33 33 H 1.09004 * 109.47059 * 59.99372 * 8 7 6 34 34 H 1.08992 * 109.47534 * 299.99582 * 9 8 7 35 35 H 1.08996 * 109.47134 * 60.00388 * 9 8 7 36 36 H 0.97002 * 119.99797 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2333 1.2567 0.0000 4 6 3.1947 1.2600 1.1881 5 6 4.2338 0.1546 1.0465 6 7 3.5661 -1.1575 1.0926 7 6 3.9622 -2.1830 2.0610 8 6 5.1381 -2.9860 1.5012 9 6 5.5522 -4.0566 2.5128 10 6 6.7100 -4.8479 1.9611 11 1 7.1101 -4.6112 0.9862 12 6 7.2578 -5.8748 2.7004 13 7 6.7702 -6.1633 3.8872 14 14 8.6934 -6.8552 2.0167 15 1 9.9694 -6.2138 2.4238 16 1 8.6442 -8.2408 2.5485 17 1 8.6076 -6.8904 0.5347 18 16 2.3350 -1.4227 -0.0006 19 8 2.9394 -1.5348 -1.2818 20 8 1.4941 -2.4212 0.5608 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3634 0.8901 -0.5135 23 1 -0.3634 -0.8898 -0.5141 24 1 2.8005 1.3365 -0.9274 25 1 1.5494 2.1015 0.0828 26 1 3.6999 2.2245 1.2385 27 1 2.6303 1.1020 2.1071 28 1 4.9524 0.2262 1.8629 29 1 4.7519 0.2661 0.0940 30 1 4.2601 -1.7055 2.9945 31 1 3.1215 -2.8514 2.2469 32 1 4.8403 -3.4636 0.5677 33 1 5.9788 -2.3176 1.3152 34 1 5.8502 -3.5788 3.4460 35 1 4.7117 -4.7250 2.6990 36 1 7.1558 -6.8855 4.4075 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386740868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:22 Heat of formation + Delta-G solvation = -106.318912 kcal Electronic energy + Delta-G solvation = -18571.890386 eV Core-core repulsion = 15602.528848 eV Total energy + Delta-G solvation = -2969.361538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.88108 -38.36864 -37.33068 -37.00114 -35.53927 -33.68948 -31.74466 -28.60398 -27.70102 -25.92435 -24.44974 -22.72924 -22.09274 -19.74050 -18.78654 -18.57696 -18.14274 -17.08259 -16.73952 -16.46430 -15.96297 -15.62837 -15.27851 -15.05230 -14.56104 -14.20441 -14.02277 -13.70919 -13.52885 -13.39278 -13.29857 -13.23742 -12.92641 -12.81050 -12.55135 -12.46796 -12.37411 -12.05787 -11.79992 -11.51701 -11.46215 -11.29818 -10.55721 -10.05946 -9.93990 -8.20785 -6.31772 -0.56520 1.38971 1.40815 1.52067 1.68168 2.22702 2.40954 3.12085 3.42697 3.59286 3.66612 3.94914 4.13273 4.31213 4.34341 4.40255 4.53977 4.60189 4.68935 4.75234 4.85144 4.90004 4.90843 4.96046 5.10239 5.16375 5.23810 5.31159 5.47097 5.52177 5.70390 5.75041 5.83312 6.24567 6.83760 7.37092 8.90821 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.039162 B = 0.004582 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.815954 B = 6109.754315 C = 6262.492678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -1.008 6.008 3 C 0.104 3.896 4 C -0.163 4.163 5 C 0.098 3.902 6 N -1.003 6.003 7 C 0.136 3.864 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.548 4.548 11 H 0.055 0.945 12 C 0.002 3.998 13 N -0.930 5.930 14 Si 0.964 3.036 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.269 1.269 18 S 2.784 3.216 19 O -1.016 7.016 20 O -1.012 7.012 21 H 0.063 0.937 22 H 0.108 0.892 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.009 0.991 35 H -0.008 1.008 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.840 20.924 -5.489 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.853 5.853 3 C -0.020 4.020 4 C -0.203 4.203 5 C -0.026 4.026 6 N -0.844 5.844 7 C 0.011 3.989 8 C -0.159 4.159 9 C -0.014 4.014 10 C -0.586 4.586 11 H 0.073 0.927 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.789 3.211 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.193 1.193 18 S 2.794 3.206 19 O -0.998 6.998 20 O -0.996 6.996 21 H 0.082 0.918 22 H 0.127 0.873 23 H 0.074 0.926 24 H 0.094 0.906 25 H 0.144 0.856 26 H 0.152 0.848 27 H 0.101 0.899 28 H 0.124 0.876 29 H 0.091 0.909 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.027 0.973 35 H 0.010 0.990 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.033 20.008 -5.881 23.593 hybrid contribution 0.774 -0.829 0.068 1.137 sum -10.259 19.178 -5.813 22.513 Atomic orbital electron populations 1.21654 0.76302 1.03981 1.02952 1.57561 1.15428 1.21186 1.91083 1.21961 0.94942 0.86516 0.98564 1.22423 0.97463 1.00861 0.99525 1.21835 0.96676 0.79560 1.04536 1.57588 1.52132 1.23049 1.51639 1.21340 0.96864 0.88864 0.91859 1.21938 0.98100 0.97602 0.98305 1.18965 0.94859 0.93115 0.94413 1.21677 1.16825 1.16712 1.03356 0.92697 1.25947 1.00158 0.98299 0.95183 1.70083 1.43160 1.31221 1.12555 0.85462 0.79228 0.77768 0.78679 1.19283 1.20548 1.19328 1.01973 0.72839 0.72594 0.73193 1.93582 1.77654 1.86032 1.42517 1.93539 1.67630 1.59362 1.79019 0.91787 0.87320 0.92641 0.90643 0.85551 0.84785 0.89948 0.87605 0.90912 0.88115 0.91119 0.95247 0.91649 0.97293 0.98990 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.48 10.45 127.77 1.34 2.82 16 2 N -1.01 -20.53 3.48 -537.50 -1.87 -22.40 16 3 C 0.10 1.30 6.42 86.17 0.55 1.85 16 4 C -0.16 -1.88 5.98 30.33 0.18 -1.70 16 5 C 0.10 1.92 6.40 86.02 0.55 2.47 16 6 N -1.00 -29.24 3.09 -514.98 -1.59 -30.84 16 7 C 0.14 4.77 5.78 86.38 0.50 5.27 16 8 C -0.12 -5.25 5.48 30.59 0.17 -5.08 16 9 C 0.02 1.32 4.97 29.85 0.15 1.47 16 10 C -0.55 -32.40 9.11 25.60 0.23 -32.17 16 11 H 0.05 3.17 7.74 -2.91 -0.02 3.14 16 12 C 0.00 0.13 5.46 84.66 0.46 0.59 16 13 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 14 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 S 2.78 88.72 5.90 -56.49 -0.33 88.39 16 19 O -1.02 -39.10 18.16 -128.06 -2.33 -41.43 16 20 O -1.01 -38.96 16.26 -128.06 -2.08 -41.04 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.11 0.90 8.05 -2.39 -0.02 0.88 16 23 H 0.05 0.98 7.96 -2.39 -0.02 0.97 16 24 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.13 0.70 7.95 -2.39 -0.02 0.68 16 26 H 0.13 0.61 8.14 -2.39 -0.02 0.60 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.11 1.84 7.95 -2.39 -0.02 1.82 16 29 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.10 3.04 8.07 -2.38 -0.02 3.02 16 31 H 0.07 2.68 7.12 -2.39 -0.02 2.67 16 32 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -79.33 307.51 -0.72 -80.05 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 1.04 Total: 1.35 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 4.13 Total: -24.50 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -3.18 Total: -110.31 kcal Atomic # 8 Polarization: -78.07 SS G_CDS: -4.41 Total: -82.47 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 88.72 SS G_CDS: -0.33 Total: 88.39 kcal Total: -79.33 -0.72 -80.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386740868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.268 kcal (2) G-P(sol) polarization free energy of solvation -79.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds