Wall clock time and date at job start Mon Mar 30 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99747 * 2 1 4 4 H 1.08000 * 119.99683 * 202.34388 * 3 2 1 5 5 C 1.38809 * 119.99934 * 22.34775 * 3 2 1 6 6 N 1.31621 * 120.00394 * 11.34228 * 5 3 2 7 7 Si 1.86808 * 119.99820 * 191.34339 * 5 3 2 8 8 H 1.48498 * 109.47036 * 60.00158 * 7 5 3 9 9 H 1.48499 * 109.47114 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47020 * 300.00000 * 7 5 3 11 11 C 1.46494 * 119.99724 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47047 * 269.99672 * 11 2 1 13 13 S 1.81395 * 109.47662 * 180.02562 * 12 11 2 14 14 O 1.42105 * 110.53969 * 291.62854 * 13 12 11 15 15 O 1.42102 * 110.54386 * 68.37098 * 13 12 11 16 16 N 1.65596 * 104.45489 * 180.02562 * 13 12 11 17 17 C 1.47028 * 125.64365 * 269.69187 * 16 13 12 18 18 C 1.54322 * 107.27278 * 180.96560 * 17 16 13 19 19 C 1.55155 * 102.86421 * 22.52550 * 18 17 16 20 20 C 1.47421 * 125.65164 * 89.99414 * 16 13 12 21 21 H 1.08999 * 109.47110 * 274.20722 * 1 2 3 22 22 H 1.09002 * 109.47127 * 34.20950 * 1 2 3 23 23 H 1.09002 * 109.46884 * 154.20420 * 1 2 3 24 24 H 0.97005 * 119.99987 * 179.97438 * 6 5 3 25 25 H 1.08994 * 109.47836 * 29.99980 * 11 2 1 26 26 H 1.09002 * 109.46997 * 149.99948 * 11 2 1 27 27 H 1.09004 * 109.47486 * 300.00463 * 12 11 2 28 28 H 1.09002 * 109.46997 * 60.00276 * 12 11 2 29 29 H 1.08994 * 109.88418 * 300.50753 * 17 16 13 30 30 H 1.08996 * 109.88411 * 61.67624 * 17 16 13 31 31 H 1.09004 * 110.92021 * 264.11053 * 18 17 16 32 32 H 1.08994 * 110.58590 * 140.78550 * 18 17 16 33 33 H 1.08996 * 111.00519 * 206.22927 * 19 18 17 34 34 H 1.09005 * 111.00200 * 82.37563 * 19 18 17 35 35 H 1.08997 * 110.36938 * 274.67491 * 20 16 13 36 36 H 1.09001 * 110.36196 * 36.89455 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3841 2.2690 1.0936 7 14 2.3367 4.0048 0.1688 8 1 2.4915 4.2332 -1.2903 9 1 1.4850 5.0735 0.7500 10 1 3.6720 4.0287 0.8180 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 16 3.3601 -3.2816 1.4412 14 8 2.5385 -4.3320 0.9502 15 8 4.6807 -3.0943 0.9510 16 7 3.5661 -3.6405 3.0446 17 6 4.7103 -3.2338 3.8736 18 6 4.4821 -3.8131 5.2856 19 6 3.5101 -4.9933 5.0218 20 6 2.6357 -4.4259 3.8758 21 1 -0.3633 0.0754 1.0249 22 1 -0.3633 0.8499 -0.5778 23 1 -0.3633 -0.9253 -0.4472 24 1 -0.0461 3.0775 1.4133 25 1 1.6085 -2.0281 -0.5147 26 1 3.1499 -1.1382 -0.5144 27 1 3.0416 -0.9515 1.9559 28 1 1.5001 -1.8415 1.9555 29 1 5.6333 -3.6318 3.4523 30 1 4.7627 -2.1463 3.9252 31 1 4.0215 -3.0731 5.9402 32 1 5.4200 -4.1730 5.7083 33 1 2.9070 -5.2075 5.9040 34 1 4.0526 -5.8810 4.6964 35 1 1.8524 -3.7839 4.2786 36 1 2.1985 -5.2367 3.2929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389657503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:59 Heat of formation + Delta-G solvation = -47.432971 kcal Electronic energy + Delta-G solvation = -18513.167501 eV Core-core repulsion = 15546.359449 eV Total energy + Delta-G solvation = -2966.808052 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.27011 -36.66999 -36.02820 -35.50658 -32.14976 -30.88114 -29.53719 -28.99172 -26.03639 -24.03483 -22.48681 -21.27297 -20.71251 -18.61507 -17.53648 -16.87522 -16.48326 -15.75037 -15.29496 -14.92026 -14.05053 -13.80777 -13.69439 -13.50890 -13.23467 -12.84503 -12.69667 -12.54303 -11.74107 -11.64764 -11.56249 -11.40747 -11.37714 -11.18539 -11.08650 -11.02322 -10.80776 -10.71566 -10.53948 -10.21870 -10.12774 -9.90395 -8.83093 -8.70150 -6.97380 -5.91055 -3.32592 0.63016 2.97286 3.31200 3.36118 3.37791 4.22030 4.30891 4.37679 4.48319 4.78734 4.86053 5.19653 5.24881 5.36367 5.43566 5.46714 5.50712 5.57964 5.64492 5.73949 5.80256 5.89924 6.05641 6.06567 6.21680 6.26804 6.54482 6.59676 6.68811 7.24866 7.58222 7.66720 8.20513 9.04503 9.64946 10.13675 11.12984 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.005427 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.863635 B = 5158.616182 C = 5438.883329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.578 5.578 3 C -0.259 4.259 4 H 0.075 0.925 5 C 0.005 3.995 6 N -0.901 5.901 7 Si 0.911 3.089 8 H -0.281 1.281 9 H -0.289 1.289 10 H -0.281 1.281 11 C 0.158 3.842 12 C -0.616 4.616 13 S 2.590 3.410 14 O -0.971 6.971 15 O -0.968 6.968 16 N -1.018 6.018 17 C 0.119 3.881 18 C -0.129 4.129 19 C -0.129 4.129 20 C 0.114 3.886 21 H 0.032 0.968 22 H 0.051 0.949 23 H 0.004 0.996 24 H 0.257 0.743 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 -11.177 7.969 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.300 5.300 3 C -0.390 4.390 4 H 0.093 0.907 5 C -0.195 4.195 6 N -0.545 5.545 7 Si 0.740 3.260 8 H -0.207 1.207 9 H -0.214 1.214 10 H -0.207 1.207 11 C 0.027 3.973 12 C -0.752 4.752 13 S 2.688 3.312 14 O -0.961 6.961 15 O -0.958 6.958 16 N -0.855 5.855 17 C -0.006 4.006 18 C -0.168 4.168 19 C -0.168 4.168 20 C -0.011 4.011 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.022 0.978 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.146 0.854 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.603 -11.591 7.223 14.412 hybrid contribution 0.037 1.529 0.562 1.630 sum 4.640 -10.061 7.785 13.541 Atomic orbital electron populations 1.20951 0.81828 0.96373 0.99741 1.44138 1.02300 1.00288 1.83322 1.19349 0.98585 0.84997 1.36108 0.90711 1.25130 0.97581 0.98969 0.97835 1.70065 1.17551 1.27762 1.39137 0.86226 0.78581 0.82935 0.78208 1.20684 1.21430 1.20661 1.20756 0.97465 0.89935 0.89104 1.31625 1.13410 1.18748 1.11385 1.06446 0.75252 0.77867 0.71586 1.93508 1.70919 1.53916 1.77739 1.93519 1.36897 1.87653 1.77708 1.58891 1.30501 1.67567 1.28508 1.21656 0.88965 0.99419 0.90593 1.22636 1.00096 0.97929 0.96166 1.22757 0.97857 0.98106 0.98128 1.21995 0.92133 0.94858 0.92134 0.94971 0.92988 0.97778 0.93306 0.92691 0.92083 0.85383 0.86150 0.91332 0.91686 0.90604 0.90428 0.90212 0.90798 0.91726 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.76 9.01 59.85 0.54 4.30 16 2 N -0.58 -14.43 2.93 -181.12 -0.53 -14.96 16 3 C -0.26 -6.98 9.67 -15.06 -0.15 -7.13 16 4 H 0.08 1.95 7.84 -52.49 -0.41 1.54 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.90 -25.32 10.59 55.49 0.59 -24.73 16 7 Si 0.91 21.21 29.57 -169.99 -5.03 16.18 16 8 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 C 0.16 3.30 5.72 -4.05 -0.02 3.28 16 12 C -0.62 -11.17 6.50 37.16 0.24 -10.93 16 13 S 2.59 43.83 5.65 -107.50 -0.61 43.22 16 14 O -0.97 -18.44 17.28 -57.54 -0.99 -19.43 16 15 O -0.97 -18.90 17.60 -57.54 -1.01 -19.91 16 16 N -1.02 -14.24 3.62 -111.42 -0.40 -14.64 16 17 C 0.12 1.44 6.89 -3.06 -0.02 1.41 16 18 C -0.13 -1.16 6.95 -24.90 -0.17 -1.34 16 19 C -0.13 -1.16 7.08 -24.58 -0.17 -1.33 16 20 C 0.11 1.33 7.08 -2.53 -0.02 1.31 16 21 H 0.03 0.82 7.42 -51.93 -0.39 0.44 16 22 H 0.05 1.34 7.19 -51.93 -0.37 0.96 16 23 H 0.00 0.08 7.84 -51.93 -0.41 -0.33 16 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 25 H 0.05 1.04 7.86 -51.93 -0.41 0.63 16 26 H 0.06 1.23 8.03 -51.93 -0.42 0.82 16 27 H 0.13 2.39 8.14 -51.92 -0.42 1.97 16 28 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.96 7.66 -51.93 -0.40 0.57 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -32.86 308.02 -8.95 -41.81 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -5.74 Total: -1.80 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 0.14 Total: -10.39 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.35 Total: -54.33 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -2.01 Total: -39.34 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 16 Polarization: 43.83 SS G_CDS: -0.61 Total: 43.22 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.86 -8.95 -41.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389657503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.621 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds