Wall clock time and date at job start Mon Mar 30 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36935 * 119.99747 * 2 1 4 4 H 1.08000 * 119.99683 * 202.34388 * 3 2 1 5 5 C 1.38809 * 119.99934 * 22.34775 * 3 2 1 6 6 N 1.31621 * 120.00394 * 11.34228 * 5 3 2 7 7 Si 1.86808 * 119.99820 * 191.34339 * 5 3 2 8 8 H 1.48498 * 109.47036 * 60.00158 * 7 5 3 9 9 H 1.48499 * 109.47114 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47020 * 300.00000 * 7 5 3 11 11 C 1.46494 * 119.99724 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47047 * 269.99672 * 11 2 1 13 13 S 1.81395 * 109.47662 * 180.02562 * 12 11 2 14 14 O 1.42105 * 110.53969 * 291.62854 * 13 12 11 15 15 O 1.42102 * 110.54386 * 68.37098 * 13 12 11 16 16 N 1.65596 * 104.45489 * 180.02562 * 13 12 11 17 17 C 1.47028 * 125.64365 * 269.69187 * 16 13 12 18 18 C 1.54322 * 107.27278 * 180.96560 * 17 16 13 19 19 C 1.55155 * 102.86421 * 22.52550 * 18 17 16 20 20 C 1.47421 * 125.65164 * 89.99414 * 16 13 12 21 21 H 1.08999 * 109.47110 * 274.20722 * 1 2 3 22 22 H 1.09002 * 109.47127 * 34.20950 * 1 2 3 23 23 H 1.09002 * 109.46884 * 154.20420 * 1 2 3 24 24 H 0.97005 * 119.99987 * 179.97438 * 6 5 3 25 25 H 1.08994 * 109.47836 * 29.99980 * 11 2 1 26 26 H 1.09002 * 109.46997 * 149.99948 * 11 2 1 27 27 H 1.09004 * 109.47486 * 300.00463 * 12 11 2 28 28 H 1.09002 * 109.46997 * 60.00276 * 12 11 2 29 29 H 1.08994 * 109.88418 * 300.50753 * 17 16 13 30 30 H 1.08996 * 109.88411 * 61.67624 * 17 16 13 31 31 H 1.09004 * 110.92021 * 264.11053 * 18 17 16 32 32 H 1.08994 * 110.58590 * 140.78550 * 18 17 16 33 33 H 1.08996 * 111.00519 * 206.22927 * 19 18 17 34 34 H 1.09005 * 111.00200 * 82.37563 * 19 18 17 35 35 H 1.08997 * 110.36938 * 274.67491 * 20 16 13 36 36 H 1.09001 * 110.36196 * 36.89455 * 20 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3841 2.2690 1.0936 7 14 2.3367 4.0048 0.1688 8 1 2.4915 4.2332 -1.2903 9 1 1.4850 5.0735 0.7500 10 1 3.6720 4.0287 0.8180 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 16 3.3601 -3.2816 1.4412 14 8 2.5385 -4.3320 0.9502 15 8 4.6807 -3.0943 0.9510 16 7 3.5661 -3.6405 3.0446 17 6 4.7103 -3.2338 3.8736 18 6 4.4821 -3.8131 5.2856 19 6 3.5101 -4.9933 5.0218 20 6 2.6357 -4.4259 3.8758 21 1 -0.3633 0.0754 1.0249 22 1 -0.3633 0.8499 -0.5778 23 1 -0.3633 -0.9253 -0.4472 24 1 -0.0461 3.0775 1.4133 25 1 1.6085 -2.0281 -0.5147 26 1 3.1499 -1.1382 -0.5144 27 1 3.0416 -0.9515 1.9559 28 1 1.5001 -1.8415 1.9555 29 1 5.6333 -3.6318 3.4523 30 1 4.7627 -2.1463 3.9252 31 1 4.0215 -3.0731 5.9402 32 1 5.4200 -4.1730 5.7083 33 1 2.9070 -5.2075 5.9040 34 1 4.0526 -5.8810 4.6964 35 1 1.8524 -3.7839 4.2786 36 1 2.1985 -5.2367 3.2929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389657503.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:58 Heat of formation + Delta-G solvation = -70.809729 kcal Electronic energy + Delta-G solvation = -18514.181193 eV Core-core repulsion = 15546.359449 eV Total energy + Delta-G solvation = -2967.821744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.19708 -38.20792 -37.85502 -37.05303 -34.01701 -31.84221 -31.32076 -29.86937 -28.00634 -25.79203 -23.56847 -22.48248 -22.04713 -19.91196 -19.03142 -18.63438 -17.63244 -17.16212 -16.91070 -16.48620 -15.69975 -15.39018 -14.88990 -14.68624 -14.56678 -14.34737 -14.18645 -13.53502 -13.34109 -13.25951 -13.17102 -12.92501 -12.88077 -12.63475 -12.55474 -12.26078 -12.12705 -12.12574 -12.01587 -11.87658 -11.64948 -11.51481 -10.71607 -9.94505 -8.92787 -7.91123 -5.39960 -0.77713 1.45667 1.47869 1.54610 1.68552 2.46030 2.78434 3.07874 3.23476 3.60037 3.65368 3.78664 3.90680 3.98505 4.14317 4.39014 4.44358 4.60187 4.62124 4.67019 4.78618 4.92543 5.00024 5.03379 5.06142 5.11097 5.20247 5.26954 5.39228 5.51855 5.56616 5.65274 6.23594 7.05804 7.73284 8.17832 9.12161 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026512 B = 0.005427 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.863635 B = 5158.616182 C = 5438.883329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.604 5.604 3 C -0.277 4.277 4 H 0.074 0.926 5 C -0.046 4.046 6 N -0.934 5.934 7 Si 0.972 3.028 8 H -0.277 1.277 9 H -0.291 1.291 10 H -0.274 1.274 11 C 0.147 3.853 12 C -0.619 4.619 13 S 2.640 3.360 14 O -0.985 6.985 15 O -0.989 6.989 16 N -1.019 6.019 17 C 0.104 3.896 18 C -0.122 4.122 19 C -0.122 4.122 20 C 0.100 3.900 21 H 0.011 0.989 22 H 0.025 0.975 23 H 0.034 0.966 24 H 0.252 0.748 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 -12.701 9.357 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.327 5.327 3 C -0.407 4.407 4 H 0.092 0.908 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.799 3.201 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.200 1.200 11 C 0.018 3.982 12 C -0.753 4.753 13 S 2.736 3.264 14 O -0.975 6.975 15 O -0.979 6.979 16 N -0.858 5.858 17 C -0.021 4.021 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.025 4.025 21 H 0.029 0.971 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.694 -13.084 8.587 16.654 hybrid contribution -0.200 1.720 0.195 1.743 sum 5.494 -11.364 8.782 15.377 Atomic orbital electron populations 1.20713 0.82057 0.96658 0.98225 1.44169 1.02446 1.01038 1.85074 1.19591 0.98613 0.86364 1.36102 0.90831 1.25830 0.98287 1.01961 0.98116 1.70217 1.18956 1.27952 1.40839 0.85284 0.77755 0.79037 0.78031 1.20322 1.21690 1.19971 1.20845 0.97547 0.89085 0.90709 1.31258 1.14360 1.20314 1.09408 1.04160 0.73949 0.76292 0.71986 1.93500 1.71437 1.53730 1.78827 1.93503 1.37716 1.87733 1.78946 1.58558 1.31849 1.67452 1.27978 1.21973 0.87981 0.99873 0.92245 1.22660 1.01328 0.98006 0.94080 1.22785 0.97585 0.97931 0.97835 1.22339 0.92580 0.94817 0.92745 0.97087 0.95615 0.94797 0.93920 0.90899 0.91960 0.86023 0.85526 0.91498 0.91617 0.89618 0.88293 0.87595 0.90455 0.90579 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.29 9.01 127.77 1.15 9.44 16 2 N -0.60 -30.54 2.93 -726.94 -2.13 -32.67 16 3 C -0.28 -15.15 9.67 84.03 0.81 -14.34 16 4 H 0.07 3.91 7.84 -2.91 -0.02 3.89 16 5 C -0.05 -2.54 5.13 84.86 0.44 -2.10 16 6 N -0.93 -54.03 10.59 21.65 0.23 -53.80 16 7 Si 0.97 44.30 29.57 68.60 2.03 46.33 16 8 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 9 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 C 0.15 6.10 5.72 86.38 0.49 6.59 16 12 C -0.62 -22.07 6.50 71.98 0.47 -21.60 16 13 S 2.64 85.24 5.65 -56.49 -0.32 84.92 16 14 O -0.98 -35.55 17.28 -127.65 -2.21 -37.75 16 15 O -0.99 -37.22 17.60 -127.65 -2.25 -39.47 16 16 N -1.02 -26.25 3.62 -506.43 -1.83 -28.08 16 17 C 0.10 2.25 6.89 86.73 0.60 2.85 16 18 C -0.12 -1.74 6.95 31.78 0.22 -1.52 16 19 C -0.12 -1.72 7.08 31.99 0.23 -1.50 16 20 C 0.10 2.03 7.08 86.86 0.61 2.65 16 21 H 0.01 0.57 7.42 -2.39 -0.02 0.55 16 22 H 0.03 1.35 7.19 -2.39 -0.02 1.33 16 23 H 0.03 1.41 7.84 -2.39 -0.02 1.39 16 24 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 25 H 0.07 2.69 7.86 -2.39 -0.02 2.68 16 26 H 0.06 2.51 8.03 -2.39 -0.02 2.49 16 27 H 0.12 4.53 8.14 -2.39 -0.02 4.51 16 28 H 0.13 4.36 8.14 -2.39 -0.02 4.34 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.64 7.66 -2.39 -0.02 1.63 16 Total: -1.00 -70.67 308.02 -0.41 -71.08 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 1.04 Total: 8.95 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 5.02 Total: -19.52 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -3.73 Total: -114.55 kcal Atomic # 8 Polarization: -72.77 SS G_CDS: -4.45 Total: -77.22 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 85.24 SS G_CDS: -0.32 Total: 84.92 kcal Total: -70.67 -0.41 -71.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389657503.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.273 kcal (2) G-P(sol) polarization free energy of solvation -70.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds