Wall clock time and date at job start Mon Mar 30 2020 04:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47241 * 2 1 4 4 N 1.46895 * 109.47351 * 179.97438 * 3 2 1 5 5 C 1.48562 * 110.99842 * 290.12526 * 4 3 2 6 6 C 1.54379 * 104.59486 * 200.96032 * 5 4 3 7 7 C 1.54266 * 105.05973 * 23.85004 * 6 5 4 8 8 H 1.09005 * 110.32054 * 118.89995 * 7 6 5 9 9 N 1.46504 * 110.32417 * 241.10452 * 7 6 5 10 10 S 1.65602 * 120.00009 * 263.55143 * 9 7 6 11 11 O 1.42095 * 106.40122 * 178.54170 * 10 9 7 12 12 O 1.42102 * 106.39840 * 311.45583 * 10 9 7 13 13 C 1.76195 * 107.22032 * 64.99403 * 10 9 7 14 14 H 1.07997 * 119.99949 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99883 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00102 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 119.99996 * 0.02562 * 15 13 10 18 18 H 1.48504 * 109.47487 * 89.99497 * 17 15 13 19 19 H 1.48504 * 109.47353 * 209.99674 * 17 15 13 20 20 H 1.48503 * 109.47108 * 329.99307 * 17 15 13 21 21 C 1.48562 * 111.00142 * 174.70363 * 4 3 2 22 22 H 1.08999 * 109.47025 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47401 * 300.00601 * 1 2 3 24 24 H 1.08998 * 109.46638 * 60.00375 * 1 2 3 25 25 H 1.08999 * 109.47371 * 239.99951 * 2 1 3 26 26 H 1.09002 * 109.47101 * 119.99486 * 2 1 3 27 27 H 1.08998 * 109.47414 * 59.99407 * 3 2 1 28 28 H 1.09002 * 109.46654 * 299.99760 * 3 2 1 29 29 H 1.08998 * 110.41528 * 82.17831 * 5 4 3 30 30 H 1.08997 * 110.50874 * 319.78619 * 5 4 3 31 31 H 1.08996 * 110.32596 * 264.95760 * 6 5 4 32 32 H 1.09000 * 110.41377 * 142.79352 * 6 5 4 33 33 H 0.96993 * 119.99918 * 83.54193 * 9 7 6 34 34 H 0.97006 * 120.00256 * 180.02562 * 16 15 13 35 35 H 1.09000 * 110.41111 * 40.26361 * 21 4 3 36 36 H 1.08989 * 110.41482 * 277.81625 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0408 0.9655 1.3032 6 6 5.4826 1.5144 1.3592 7 6 5.4831 2.7367 0.4181 8 1 5.7333 3.6413 0.9725 9 7 6.4312 2.5331 -0.6801 10 16 7.9599 3.1621 -0.5815 11 8 8.6334 2.7677 -1.7689 12 8 7.8107 4.5190 -0.1868 13 6 8.7758 2.3439 0.7487 14 1 8.2563 1.5863 1.3166 15 6 10.0779 2.6701 1.0638 16 7 10.6867 2.0598 2.0569 17 14 10.9766 3.9799 0.0810 18 1 10.7544 5.3081 0.7069 19 1 12.4303 3.6770 0.0656 20 1 10.4597 3.9960 -1.3111 21 6 4.0415 2.8235 -0.1274 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 4.0473 -0.1240 1.3352 30 1 3.4495 1.3657 2.1267 31 1 6.1879 0.7630 1.0041 32 1 5.7344 1.8187 2.3751 33 1 6.1635 2.0297 -1.4648 34 1 11.6027 2.2895 2.2789 35 1 3.4497 3.5161 0.4711 36 1 4.0485 3.1329 -1.1724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389977859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:17 Heat of formation + Delta-G solvation = -84.657714 kcal Electronic energy + Delta-G solvation = -18515.463954 eV Core-core repulsion = 15547.041717 eV Total energy + Delta-G solvation = -2968.422238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.09122 -35.62689 -35.16644 -34.38320 -33.02395 -32.71505 -29.88606 -27.82343 -26.38021 -25.16312 -22.02129 -20.78217 -20.25601 -19.08614 -17.53945 -16.70973 -16.15418 -15.61385 -15.21878 -15.08875 -14.55741 -13.92987 -13.60186 -13.40190 -13.27193 -12.85742 -12.63654 -12.43908 -12.16183 -11.83359 -11.63751 -11.37290 -11.33111 -11.04699 -10.87759 -10.72659 -10.61700 -10.60915 -10.49032 -10.41972 -9.76690 -9.18661 -9.17556 -8.62383 -8.38679 -6.77383 -5.30374 2.13882 3.09709 3.20062 3.29979 3.98208 3.99434 4.36007 4.62333 4.70307 4.81900 4.90227 5.09191 5.20511 5.31379 5.35653 5.38882 5.51496 5.54292 5.58577 5.68669 5.78991 5.84750 5.88765 6.00415 6.08589 6.13179 6.18143 6.27433 6.56364 6.66345 6.99974 7.07315 7.50990 7.84868 8.25662 8.74379 10.34731 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043994 B = 0.005183 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.298460 B = 5400.743947 C = 5714.055573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.044 3.956 4 N -0.511 5.511 5 C 0.034 3.966 6 C -0.145 4.145 7 C 0.157 3.843 8 H 0.100 0.900 9 N -1.112 6.112 10 S 2.674 3.326 11 O -1.010 7.010 12 O -1.015 7.015 13 C -1.014 5.014 14 H 0.124 0.876 15 C 0.154 3.846 16 N -0.824 5.824 17 Si 0.801 3.199 18 H -0.247 1.247 19 H -0.256 1.256 20 H -0.220 1.220 21 C 0.027 3.973 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.408 0.592 34 H 0.280 0.720 35 H 0.052 0.948 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.121 -2.145 -1.223 16.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.085 4.085 4 N -0.235 5.235 5 C -0.094 4.094 6 C -0.185 4.185 7 C 0.048 3.952 8 H 0.118 0.882 9 N -0.867 5.867 10 S 2.776 3.224 11 O -1.000 7.000 12 O -1.005 7.005 13 C -1.149 5.149 14 H 0.142 0.858 15 C -0.066 4.066 16 N -0.454 5.454 17 Si 0.621 3.379 18 H -0.171 1.171 19 H -0.180 1.180 20 H -0.142 1.142 21 C -0.102 4.102 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.241 0.759 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.430 -1.728 -1.971 15.651 hybrid contribution 0.156 0.259 0.694 0.757 sum -15.275 -1.469 -1.276 15.398 Atomic orbital electron populations 1.21742 0.95877 1.01616 1.01627 1.21485 0.95073 0.96450 1.02782 1.22315 0.88209 0.97242 1.00719 1.65393 1.07329 1.19324 1.31470 1.23145 0.95567 1.00798 0.89905 1.22984 0.96240 0.98804 1.00502 1.21284 0.88249 0.98194 0.87484 0.88232 1.55507 1.30837 1.73021 1.27365 1.01360 0.71467 0.73979 0.75637 1.93473 1.72050 1.84028 1.50466 1.93399 1.85525 1.36671 1.84860 1.30530 1.09742 1.38038 1.36580 0.85778 1.24419 0.95775 0.93568 0.92791 1.69989 1.13048 1.37523 1.24803 0.87874 0.82628 0.83223 0.84160 1.17103 1.18010 1.14246 1.23429 0.94855 0.89800 1.02117 0.92653 0.92981 0.92753 0.91123 0.92023 0.94802 0.90942 0.90209 0.94000 0.89266 0.90327 0.75923 0.90993 0.92970 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -1.11 5.99 -26.73 -0.16 -1.27 16 3 C 0.04 0.45 4.81 -3.83 -0.02 0.43 16 4 N -0.51 -6.52 5.37 -229.98 -1.24 -7.75 16 5 C 0.03 0.43 5.73 -2.18 -0.01 0.42 16 6 C -0.15 -2.27 6.36 -25.35 -0.16 -2.43 16 7 C 0.16 2.61 3.71 -66.54 -0.25 2.37 16 8 H 0.10 1.73 7.57 -51.93 -0.39 1.34 16 9 N -1.11 -21.20 5.40 -3.71 -0.02 -21.22 16 10 S 2.67 66.32 4.22 -107.50 -0.45 65.86 16 11 O -1.01 -27.28 16.02 -57.17 -0.92 -28.19 16 12 O -1.01 -26.86 16.21 -57.17 -0.93 -27.79 16 13 C -1.01 -27.86 10.26 30.60 0.31 -27.55 16 14 H 0.12 3.38 7.13 -52.49 -0.37 3.01 16 15 C 0.15 4.39 5.47 -17.82 -0.10 4.29 16 16 N -0.82 -23.67 13.96 55.43 0.77 -22.89 16 17 Si 0.80 20.65 26.54 -169.99 -4.51 16.14 16 18 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.22 -5.81 5.61 56.52 0.32 -5.50 16 21 C 0.03 0.37 6.13 -2.18 -0.01 0.35 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.59 7.25 -51.93 -0.38 0.21 16 27 H 0.03 0.34 7.88 -51.93 -0.41 -0.07 16 28 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.08 0.96 7.76 -51.93 -0.40 0.56 16 30 H 0.04 0.48 7.82 -51.93 -0.41 0.08 16 31 H 0.09 1.53 7.47 -51.93 -0.39 1.15 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.41 6.95 8.84 -34.47 -0.30 6.65 16 34 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.05 0.62 8.00 -51.93 -0.42 0.21 16 36 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 LS Contribution 300.84 15.07 4.53 4.53 Total: -1.00 -31.97 300.84 -8.43 -40.40 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.64 Total: 5.07 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -0.03 Total: -24.16 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.48 Total: -51.87 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -1.84 Total: -55.98 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.51 Total: 16.14 kcal Atomic # 16 Polarization: 66.32 SS G_CDS: -0.45 Total: 65.86 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.97 -8.43 -40.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389977859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.262 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds