Wall clock time and date at job start Mon Mar 30 2020 04:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47241 * 2 1 4 4 N 1.46895 * 109.47351 * 179.97438 * 3 2 1 5 5 C 1.48562 * 110.99842 * 290.12526 * 4 3 2 6 6 C 1.54379 * 104.59486 * 200.96032 * 5 4 3 7 7 C 1.54266 * 105.05973 * 23.85004 * 6 5 4 8 8 H 1.09005 * 110.32054 * 118.89995 * 7 6 5 9 9 N 1.46504 * 110.32417 * 241.10452 * 7 6 5 10 10 S 1.65602 * 120.00009 * 263.55143 * 9 7 6 11 11 O 1.42095 * 106.40122 * 178.54170 * 10 9 7 12 12 O 1.42102 * 106.39840 * 311.45583 * 10 9 7 13 13 C 1.76195 * 107.22032 * 64.99403 * 10 9 7 14 14 H 1.07997 * 119.99949 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99883 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00102 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 119.99996 * 0.02562 * 15 13 10 18 18 H 1.48504 * 109.47487 * 89.99497 * 17 15 13 19 19 H 1.48504 * 109.47353 * 209.99674 * 17 15 13 20 20 H 1.48503 * 109.47108 * 329.99307 * 17 15 13 21 21 C 1.48562 * 111.00142 * 174.70363 * 4 3 2 22 22 H 1.08999 * 109.47025 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47401 * 300.00601 * 1 2 3 24 24 H 1.08998 * 109.46638 * 60.00375 * 1 2 3 25 25 H 1.08999 * 109.47371 * 239.99951 * 2 1 3 26 26 H 1.09002 * 109.47101 * 119.99486 * 2 1 3 27 27 H 1.08998 * 109.47414 * 59.99407 * 3 2 1 28 28 H 1.09002 * 109.46654 * 299.99760 * 3 2 1 29 29 H 1.08998 * 110.41528 * 82.17831 * 5 4 3 30 30 H 1.08997 * 110.50874 * 319.78619 * 5 4 3 31 31 H 1.08996 * 110.32596 * 264.95760 * 6 5 4 32 32 H 1.09000 * 110.41377 * 142.79352 * 6 5 4 33 33 H 0.96993 * 119.99918 * 83.54193 * 9 7 6 34 34 H 0.97006 * 120.00256 * 180.02562 * 16 15 13 35 35 H 1.09000 * 110.41111 * 40.26361 * 21 4 3 36 36 H 1.08989 * 110.41482 * 277.81625 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0408 0.9655 1.3032 6 6 5.4826 1.5144 1.3592 7 6 5.4831 2.7367 0.4181 8 1 5.7333 3.6413 0.9725 9 7 6.4312 2.5331 -0.6801 10 16 7.9599 3.1621 -0.5815 11 8 8.6334 2.7677 -1.7689 12 8 7.8107 4.5190 -0.1868 13 6 8.7758 2.3439 0.7487 14 1 8.2563 1.5863 1.3166 15 6 10.0779 2.6701 1.0638 16 7 10.6867 2.0598 2.0569 17 14 10.9766 3.9799 0.0810 18 1 10.7544 5.3081 0.7069 19 1 12.4303 3.6770 0.0656 20 1 10.4597 3.9960 -1.3111 21 6 4.0415 2.8235 -0.1274 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.6767 1.9563 -0.8900 29 1 4.0473 -0.1240 1.3352 30 1 3.4495 1.3657 2.1267 31 1 6.1879 0.7630 1.0041 32 1 5.7344 1.8187 2.3751 33 1 6.1635 2.0297 -1.4648 34 1 11.6027 2.2895 2.2789 35 1 3.4497 3.5161 0.4711 36 1 4.0485 3.1329 -1.1724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389977859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:17 Heat of formation + Delta-G solvation = -110.780896 kcal Electronic energy + Delta-G solvation = -18516.596740 eV Core-core repulsion = 15547.041717 eV Total energy + Delta-G solvation = -2969.555024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18974 -37.65559 -36.46792 -36.28492 -35.16103 -33.83931 -30.99565 -28.96603 -28.50890 -26.07836 -22.91142 -21.92886 -21.32293 -21.01503 -19.50423 -18.64299 -17.49144 -17.13028 -16.65072 -16.19828 -15.89243 -15.62294 -15.27770 -14.96274 -14.53696 -14.30024 -13.91367 -13.48824 -13.45522 -13.36933 -13.00267 -12.86029 -12.69335 -12.64769 -12.54756 -12.24952 -12.10242 -11.90056 -11.70911 -11.58421 -11.41992 -11.31063 -11.14422 -10.25674 -9.38690 -8.93228 -7.47692 0.19167 1.06430 1.15431 1.23321 1.91078 2.45084 2.60107 3.04674 3.34714 3.60716 3.76840 4.10326 4.16485 4.22317 4.29185 4.35903 4.49987 4.52618 4.56808 4.68050 4.76209 4.83734 4.93147 4.93815 5.05365 5.23515 5.26213 5.28967 5.36957 5.44518 5.47075 5.90862 6.08824 6.15805 6.35993 6.58206 8.23872 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043994 B = 0.005183 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.298460 B = 5400.743947 C = 5714.055573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.043 3.957 4 N -0.522 5.522 5 C 0.043 3.957 6 C -0.148 4.148 7 C 0.143 3.857 8 H 0.089 0.911 9 N -1.097 6.097 10 S 2.696 3.304 11 O -1.033 7.033 12 O -1.031 7.031 13 C -1.033 5.033 14 H 0.114 0.886 15 C 0.111 3.889 16 N -0.853 5.853 17 Si 0.822 3.178 18 H -0.239 1.239 19 H -0.222 1.222 20 H -0.231 1.231 21 C 0.035 3.965 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.420 0.580 34 H 0.290 0.710 35 H 0.073 0.927 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.698 -1.903 -1.512 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.085 4.085 4 N -0.246 5.246 5 C -0.085 4.085 6 C -0.188 4.188 7 C 0.035 3.965 8 H 0.107 0.893 9 N -0.857 5.857 10 S 2.796 3.204 11 O -1.023 7.023 12 O -1.021 7.021 13 C -1.166 5.166 14 H 0.132 0.868 15 C -0.106 4.106 16 N -0.484 5.484 17 Si 0.639 3.361 18 H -0.163 1.163 19 H -0.145 1.145 20 H -0.154 1.154 21 C -0.094 4.094 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.255 0.745 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.993 -1.502 -2.247 17.207 hybrid contribution 0.554 0.131 0.811 0.991 sum -16.439 -1.371 -1.436 16.559 Atomic orbital electron populations 1.21709 0.94484 1.02185 1.02101 1.21458 0.96239 0.95643 1.02196 1.22394 0.86486 0.98085 1.01497 1.65399 1.09037 1.18767 1.31436 1.23077 0.93616 1.01139 0.90691 1.22945 0.97973 0.97922 0.99984 1.21578 0.89662 0.98244 0.87019 0.89255 1.55037 1.29184 1.72846 1.28630 1.00533 0.72291 0.73419 0.74206 1.93432 1.73776 1.84306 1.50806 1.93371 1.86245 1.37526 1.84955 1.31014 1.10102 1.38007 1.37502 0.86761 1.25106 0.96726 0.95089 0.93649 1.70010 1.14012 1.38627 1.25706 0.87538 0.83971 0.82004 0.82550 1.16287 1.14467 1.15388 1.23363 0.92571 0.90861 1.02631 0.92098 0.92464 0.92311 0.92041 0.92314 0.93897 0.90206 0.89589 0.92284 0.91404 0.90541 0.74496 0.89972 0.90880 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.91 5.99 30.60 0.18 -1.73 16 3 C 0.04 0.77 4.81 86.30 0.42 1.19 16 4 N -0.52 -12.10 5.37 -881.52 -4.73 -16.84 16 5 C 0.04 1.00 5.73 86.45 0.50 1.50 16 6 C -0.15 -4.55 6.36 31.49 0.20 -4.35 16 7 C 0.14 4.63 3.71 45.89 0.17 4.80 16 8 H 0.09 3.07 7.57 -2.38 -0.02 3.05 16 9 N -1.10 -41.19 5.40 -165.65 -0.89 -42.09 16 10 S 2.70 133.36 4.22 -56.49 -0.24 133.12 16 11 O -1.03 -55.56 16.02 -128.00 -2.05 -57.61 16 12 O -1.03 -54.21 16.21 -128.00 -2.07 -56.28 16 13 C -1.03 -57.44 10.26 67.73 0.69 -56.75 16 14 H 0.11 6.39 7.13 -2.91 -0.02 6.37 16 15 C 0.11 6.35 5.47 84.66 0.46 6.82 16 16 N -0.85 -49.18 13.96 21.45 0.30 -48.88 16 17 Si 0.82 41.27 26.54 68.60 1.82 43.09 16 18 H -0.24 -11.64 7.11 99.48 0.71 -10.94 16 19 H -0.22 -9.90 7.11 99.48 0.71 -9.19 16 20 H -0.23 -12.01 5.61 99.48 0.56 -11.45 16 21 C 0.04 0.87 6.13 86.45 0.53 1.40 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 0.98 7.25 -2.39 -0.02 0.97 16 27 H 0.04 0.71 7.88 -2.39 -0.02 0.69 16 28 H 0.08 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.09 1.93 7.76 -2.39 -0.02 1.91 16 30 H 0.06 1.20 7.82 -2.39 -0.02 1.18 16 31 H 0.07 2.36 7.47 -2.39 -0.02 2.34 16 32 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.42 13.89 8.84 -96.75 -0.86 13.04 16 34 H 0.29 15.10 8.31 -92.70 -0.77 14.33 16 35 H 0.07 1.52 8.00 -2.39 -0.02 1.50 16 36 H 0.09 2.23 8.05 -2.39 -0.02 2.21 16 Total: -1.00 -67.06 300.84 -3.95 -71.00 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.06 Total: 22.74 kcal Atomic # 6 Polarization: -52.13 SS G_CDS: 3.87 Total: -48.26 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -5.33 Total: -107.80 kcal Atomic # 8 Polarization: -109.77 SS G_CDS: -4.12 Total: -113.89 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.82 Total: 43.09 kcal Atomic # 16 Polarization: 133.36 SS G_CDS: -0.24 Total: 133.12 kcal Total: -67.06 -3.95 -71.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389977859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.778 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds