Wall clock time and date at job start Mon Mar 30 2020 04:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47218 * 2 1 4 4 N 1.46904 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.47440 * 110.99676 * 290.12754 * 4 3 2 6 6 C 1.54317 * 107.23368 * 236.73977 * 5 4 3 7 7 C 1.55144 * 103.01861 * 337.71644 * 6 5 4 8 8 H 1.09000 * 110.99290 * 277.56635 * 7 6 5 9 9 N 1.46503 * 110.99518 * 153.74548 * 7 6 5 10 10 S 1.65595 * 120.00017 * 96.45042 * 9 7 6 11 11 O 1.42100 * 106.40080 * 178.54129 * 10 9 7 12 12 O 1.42095 * 106.40487 * 311.46272 * 10 9 7 13 13 C 1.76198 * 107.21778 * 65.00582 * 10 9 7 14 14 H 1.08006 * 120.00329 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00229 * 179.97438 * 13 10 9 16 16 N 1.31506 * 120.00040 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00117 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47112 * 60.00059 * 17 15 13 19 19 H 1.48504 * 109.47248 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47488 * 300.00003 * 17 15 13 21 21 C 1.47842 * 111.00238 * 169.28143 * 4 3 2 22 22 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46948 * 300.00070 * 1 2 3 24 24 H 1.08994 * 109.47213 * 60.00376 * 1 2 3 25 25 H 1.09004 * 109.47273 * 239.99676 * 2 1 3 26 26 H 1.09006 * 109.47039 * 120.00298 * 2 1 3 27 27 H 1.08998 * 109.47219 * 60.00095 * 3 2 1 28 28 H 1.09006 * 109.47359 * 300.00102 * 3 2 1 29 29 H 1.09000 * 109.89463 * 117.33566 * 5 4 3 30 30 H 1.09000 * 109.88994 * 356.14383 * 5 4 3 31 31 H 1.08999 * 110.70846 * 96.09223 * 6 5 4 32 32 H 1.09000 * 110.71111 * 219.33808 * 6 5 4 33 33 H 0.96999 * 119.99616 * 276.46094 * 9 7 6 34 34 H 0.97001 * 120.00635 * 179.97438 * 16 15 13 35 35 H 1.09004 * 110.37187 * 265.19138 * 21 4 3 36 36 H 1.09002 * 110.37256 * 27.42242 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0379 0.9686 1.2915 6 6 4.9566 2.0785 1.8442 7 6 5.3450 2.8766 0.5717 8 1 6.1702 2.3961 0.0462 9 7 5.6742 4.2652 0.9031 10 16 7.2537 4.7124 1.1206 11 8 7.2420 6.1072 1.3921 12 8 7.8245 3.7540 2.0009 13 6 8.0700 4.5139 -0.4282 14 1 7.5206 4.1555 -1.2862 15 6 9.4102 4.8160 -0.5449 16 7 10.0791 5.2528 0.4997 17 14 10.2757 4.6048 -2.1867 18 1 9.6236 5.4673 -3.2046 19 1 11.7019 4.9951 -2.0483 20 1 10.1897 3.1849 -2.6127 21 6 4.0388 2.7986 -0.2573 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 4.6102 0.0526 1.1446 30 1 3.2163 0.7880 1.9847 31 1 4.4154 2.7127 2.5465 32 1 5.8410 1.6484 2.3142 33 1 4.9669 4.9225 0.9952 34 1 11.0221 5.4650 0.4178 35 1 4.2543 2.9273 -1.3181 36 1 3.3281 3.5536 0.0791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389977860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:21 Heat of formation + Delta-G solvation = -100.264069 kcal Electronic energy + Delta-G solvation = -18372.012097 eV Core-core repulsion = 15402.913117 eV Total energy + Delta-G solvation = -2969.098980 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.11263 -35.33921 -35.00403 -33.93371 -33.12591 -32.73818 -29.82701 -27.81187 -26.12139 -25.09333 -22.01686 -20.89877 -20.13133 -19.06616 -17.46577 -16.41463 -16.16757 -15.78553 -14.97239 -14.74401 -14.21351 -13.99333 -13.98525 -13.34472 -13.24356 -12.74963 -12.60763 -12.09230 -11.93133 -11.83069 -11.46329 -11.34664 -11.19324 -11.17446 -10.90905 -10.78315 -10.61071 -10.54269 -10.28274 -10.19191 -10.14689 -9.22588 -9.02158 -8.52966 -8.27315 -6.68948 -5.31151 2.33682 3.10288 3.14461 3.20322 3.92658 4.10013 4.65579 4.71105 4.72845 4.88741 4.92332 5.07497 5.23699 5.28554 5.41223 5.45623 5.54720 5.59612 5.65837 5.75211 5.83340 5.85859 6.01131 6.02957 6.12678 6.16516 6.31060 6.43553 6.54212 6.86435 7.02645 7.11762 7.33543 7.88342 7.98333 8.90142 10.25300 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031677 B = 0.005098 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.722491 B = 5490.660579 C = 5933.717436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.050 3.950 4 N -0.530 5.530 5 C 0.042 3.958 6 C -0.161 4.161 7 C 0.155 3.845 8 H 0.105 0.895 9 N -1.127 6.127 10 S 2.715 3.285 11 O -1.008 7.008 12 O -1.004 7.004 13 C -1.022 5.022 14 H 0.102 0.898 15 C 0.133 3.867 16 N -0.846 5.846 17 Si 0.920 3.080 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.263 1.263 21 C 0.037 3.963 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.401 0.599 34 H 0.291 0.709 35 H 0.087 0.913 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.435 -8.217 -1.974 16.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.078 4.078 4 N -0.254 5.254 5 C -0.086 4.086 6 C -0.201 4.201 7 C 0.046 3.954 8 H 0.123 0.877 9 N -0.880 5.880 10 S 2.814 3.186 11 O -0.998 6.998 12 O -0.994 6.994 13 C -1.155 5.155 14 H 0.120 0.880 15 C -0.085 4.085 16 N -0.475 5.475 17 Si 0.744 3.256 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.092 4.092 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.231 0.769 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.600 -8.317 -1.455 16.008 hybrid contribution -0.142 0.615 -0.772 0.997 sum -13.742 -7.702 -2.226 15.910 Atomic orbital electron populations 1.21743 0.95889 1.01597 1.01671 1.21517 0.95031 0.96517 1.02755 1.22324 0.87768 0.97083 1.00636 1.63578 1.07273 1.23054 1.31497 1.22850 0.97734 0.98753 0.89249 1.23316 1.00567 0.97521 0.98692 1.21616 0.97508 0.82277 0.94029 0.87665 1.56033 1.27822 1.14935 1.89177 1.00424 0.69735 0.72398 0.75995 1.93374 1.85443 1.33931 1.87076 1.93362 1.75449 1.63637 1.66918 1.30539 1.05853 1.59812 1.19324 0.87957 1.24737 0.96066 0.89058 0.98602 1.69885 1.11562 1.35665 1.30435 0.86204 0.77997 0.79753 0.81636 1.18876 1.20151 1.18785 1.23306 0.95563 0.89054 1.01270 0.92661 0.92978 0.92729 0.91133 0.92024 0.94858 0.90998 0.90256 0.92790 0.91323 0.89353 0.76882 0.89839 0.89466 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.11 5.96 -26.73 -0.16 -1.27 16 3 C 0.05 0.53 4.53 -3.83 -0.02 0.52 16 4 N -0.53 -6.85 5.16 -231.25 -1.19 -8.05 16 5 C 0.04 0.54 6.21 -2.84 -0.02 0.52 16 6 C -0.16 -2.49 6.64 -24.91 -0.17 -2.65 16 7 C 0.16 2.66 3.56 -65.79 -0.23 2.43 16 8 H 0.11 1.95 8.00 -51.93 -0.42 1.53 16 9 N -1.13 -21.94 5.65 -3.07 -0.02 -21.96 16 10 S 2.71 71.20 4.97 -107.50 -0.53 70.66 16 11 O -1.01 -29.47 18.02 -57.17 -1.03 -30.50 16 12 O -1.00 -28.85 17.78 -57.17 -1.02 -29.87 16 13 C -1.02 -27.93 9.65 30.60 0.30 -27.63 16 14 H 0.10 2.54 7.81 -52.48 -0.41 2.13 16 15 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 16 N -0.85 -24.91 13.19 55.43 0.73 -24.18 16 17 Si 0.92 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.26 -5.72 7.11 56.52 0.40 -5.31 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 21 C 0.04 0.52 6.34 -2.30 -0.01 0.51 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.57 7.14 -51.93 -0.37 0.20 16 27 H 0.03 0.35 7.96 -51.93 -0.41 -0.06 16 28 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.61 6.91 -51.93 -0.36 0.25 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.40 6.72 8.74 -34.47 -0.30 6.42 16 34 H 0.29 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.64 7.69 -51.93 -0.40 0.24 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -33.90 309.66 -9.06 -42.96 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.61 Total: 5.44 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.48 Total: -54.18 kcal Atomic # 8 Polarization: -58.32 SS G_CDS: -2.05 Total: -60.37 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 71.20 SS G_CDS: -0.53 Total: 70.66 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.90 -9.06 -42.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389977860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.302 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds