Wall clock time and date at job start Mon Mar 30 2020 04:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47218 * 2 1 4 4 N 1.46904 * 109.47426 * 180.02562 * 3 2 1 5 5 C 1.47440 * 110.99676 * 290.12754 * 4 3 2 6 6 C 1.54317 * 107.23368 * 236.73977 * 5 4 3 7 7 C 1.55144 * 103.01861 * 337.71644 * 6 5 4 8 8 H 1.09000 * 110.99290 * 277.56635 * 7 6 5 9 9 N 1.46503 * 110.99518 * 153.74548 * 7 6 5 10 10 S 1.65595 * 120.00017 * 96.45042 * 9 7 6 11 11 O 1.42100 * 106.40080 * 178.54129 * 10 9 7 12 12 O 1.42095 * 106.40487 * 311.46272 * 10 9 7 13 13 C 1.76198 * 107.21778 * 65.00582 * 10 9 7 14 14 H 1.08006 * 120.00329 * 359.97438 * 13 10 9 15 15 C 1.37877 * 120.00229 * 179.97438 * 13 10 9 16 16 N 1.31506 * 120.00040 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00117 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47112 * 60.00059 * 17 15 13 19 19 H 1.48504 * 109.47248 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47488 * 300.00003 * 17 15 13 21 21 C 1.47842 * 111.00238 * 169.28143 * 4 3 2 22 22 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46948 * 300.00070 * 1 2 3 24 24 H 1.08994 * 109.47213 * 60.00376 * 1 2 3 25 25 H 1.09004 * 109.47273 * 239.99676 * 2 1 3 26 26 H 1.09006 * 109.47039 * 120.00298 * 2 1 3 27 27 H 1.08998 * 109.47219 * 60.00095 * 3 2 1 28 28 H 1.09006 * 109.47359 * 300.00102 * 3 2 1 29 29 H 1.09000 * 109.89463 * 117.33566 * 5 4 3 30 30 H 1.09000 * 109.88994 * 356.14383 * 5 4 3 31 31 H 1.08999 * 110.70846 * 96.09223 * 6 5 4 32 32 H 1.09000 * 110.71111 * 219.33808 * 6 5 4 33 33 H 0.96999 * 119.99616 * 276.46094 * 9 7 6 34 34 H 0.97001 * 120.00635 * 179.97438 * 16 15 13 35 35 H 1.09004 * 110.37187 * 265.19138 * 21 4 3 36 36 H 1.09002 * 110.37256 * 27.42242 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4425 -0.0006 5 6 4.0379 0.9686 1.2915 6 6 4.9566 2.0785 1.8442 7 6 5.3450 2.8766 0.5717 8 1 6.1702 2.3961 0.0462 9 7 5.6742 4.2652 0.9031 10 16 7.2537 4.7124 1.1206 11 8 7.2420 6.1072 1.3921 12 8 7.8245 3.7540 2.0009 13 6 8.0700 4.5139 -0.4282 14 1 7.5206 4.1555 -1.2862 15 6 9.4102 4.8160 -0.5449 16 7 10.0791 5.2528 0.4997 17 14 10.2757 4.6048 -2.1867 18 1 9.6236 5.4673 -3.2046 19 1 11.7019 4.9951 -2.0483 20 1 10.1897 3.1849 -2.6127 21 6 4.0388 2.7986 -0.2573 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 4.6102 0.0526 1.1446 30 1 3.2163 0.7880 1.9847 31 1 4.4154 2.7127 2.5465 32 1 5.8410 1.6484 2.3142 33 1 4.9669 4.9225 0.9952 34 1 11.0221 5.4650 0.4178 35 1 4.2543 2.9273 -1.3181 36 1 3.3281 3.5536 0.0791 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389977860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:20 Heat of formation + Delta-G solvation = -128.134261 kcal Electronic energy + Delta-G solvation = -18373.220639 eV Core-core repulsion = 15402.913117 eV Total energy + Delta-G solvation = -2970.307522 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.23460 -37.39710 -36.27456 -36.12901 -35.18025 -33.91094 -30.93171 -28.98309 -28.25600 -26.01752 -22.90345 -22.17159 -21.15803 -21.05802 -19.34797 -18.33340 -17.49898 -17.16052 -16.68792 -16.05660 -15.85681 -15.51341 -14.99555 -14.89365 -14.48884 -13.99802 -13.70719 -13.47498 -13.37499 -13.11372 -12.99541 -12.86925 -12.65228 -12.50650 -12.43285 -12.31799 -12.24308 -12.05189 -11.78001 -11.58446 -11.46138 -11.22893 -10.99408 -10.22196 -9.27941 -8.75307 -7.48378 0.34306 1.35137 1.37205 1.50103 2.21165 2.58598 2.78138 3.20514 3.55842 3.68418 3.83478 4.06486 4.15263 4.23693 4.28372 4.35848 4.52373 4.55480 4.59228 4.72722 4.78861 4.85121 4.92892 4.94701 5.05808 5.19274 5.25005 5.25269 5.34823 5.41600 5.47456 5.89424 5.96376 6.16535 6.36847 6.78694 8.21119 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031677 B = 0.005098 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.722491 B = 5490.660579 C = 5933.717436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.048 3.952 4 N -0.536 5.536 5 C 0.050 3.950 6 C -0.162 4.162 7 C 0.140 3.860 8 H 0.087 0.913 9 N -1.110 6.110 10 S 2.722 3.278 11 O -1.046 7.046 12 O -1.038 7.038 13 C -1.042 5.042 14 H 0.121 0.879 15 C 0.071 3.929 16 N -0.894 5.894 17 Si 0.989 3.011 18 H -0.250 1.250 19 H -0.264 1.264 20 H -0.250 1.250 21 C 0.047 3.953 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.415 0.585 34 H 0.299 0.701 35 H 0.091 0.909 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.916 -9.156 -3.588 18.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.080 4.080 4 N -0.261 5.261 5 C -0.078 4.078 6 C -0.202 4.202 7 C 0.032 3.968 8 H 0.105 0.895 9 N -0.868 5.868 10 S 2.823 3.177 11 O -1.036 7.036 12 O -1.028 7.028 13 C -1.176 5.176 14 H 0.139 0.861 15 C -0.142 4.142 16 N -0.526 5.526 17 Si 0.807 3.193 18 H -0.174 1.174 19 H -0.189 1.189 20 H -0.173 1.173 21 C -0.083 4.083 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.249 0.751 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.112 -9.254 -3.051 17.981 hybrid contribution 0.231 0.876 -0.225 0.934 sum -14.880 -8.378 -3.276 17.388 Atomic orbital electron populations 1.21715 0.94569 1.02257 1.02022 1.21483 0.96114 0.95415 1.02442 1.22432 0.86114 0.98214 1.01201 1.63619 1.08881 1.22145 1.31423 1.22805 0.97795 0.97607 0.89579 1.23295 1.00565 0.98315 0.98039 1.21856 0.98726 0.80580 0.95645 0.89461 1.55349 1.25822 1.16566 1.89061 0.99842 0.70927 0.71222 0.75758 1.93311 1.86669 1.36032 1.87613 1.93311 1.77237 1.64187 1.68069 1.30908 1.06703 1.59742 1.20214 0.86103 1.26006 0.97031 0.88207 1.02995 1.69980 1.12429 1.37075 1.33101 0.85174 0.77237 0.80617 0.76253 1.17408 1.18851 1.17313 1.23209 0.93933 0.90290 1.00821 0.91899 0.92665 0.92347 0.91685 0.92125 0.94379 0.90309 0.89974 0.90770 0.90713 0.91307 0.75098 0.89103 0.89050 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.85 5.96 30.59 0.18 -1.66 16 3 C 0.05 0.89 4.53 86.30 0.39 1.28 16 4 N -0.54 -12.65 5.16 -885.55 -4.57 -17.22 16 5 C 0.05 1.19 6.21 86.65 0.54 1.73 16 6 C -0.16 -4.91 6.64 31.78 0.21 -4.70 16 7 C 0.14 4.74 3.56 46.38 0.17 4.91 16 8 H 0.09 3.26 8.00 -2.39 -0.02 3.24 16 9 N -1.11 -43.06 5.65 -163.63 -0.92 -43.98 16 10 S 2.72 145.71 4.97 -56.49 -0.28 145.43 16 11 O -1.05 -62.71 18.02 -128.00 -2.31 -65.02 16 12 O -1.04 -61.57 17.78 -128.00 -2.28 -63.84 16 13 C -1.04 -57.18 9.65 67.73 0.65 -56.53 16 14 H 0.12 5.93 7.81 -2.91 -0.02 5.91 16 15 C 0.07 3.93 5.46 84.66 0.46 4.39 16 16 N -0.89 -53.61 13.19 21.45 0.28 -53.33 16 17 Si 0.99 41.26 29.54 68.60 2.03 43.29 16 18 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 20 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 21 C 0.05 1.22 6.34 86.77 0.55 1.77 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.06 0.97 7.14 -2.38 -0.02 0.95 16 27 H 0.04 0.68 7.96 -2.39 -0.02 0.66 16 28 H 0.08 1.36 8.07 -2.38 -0.02 1.34 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.47 6.91 -2.39 -0.02 1.46 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.41 13.64 8.74 -96.75 -0.85 12.80 16 34 H 0.30 16.12 8.31 -92.71 -0.77 15.35 16 35 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.06 1.50 7.69 -2.39 -0.02 1.48 16 Total: -1.00 -73.61 309.66 -3.96 -77.57 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.22 Total: 27.06 kcal Atomic # 6 Polarization: -53.81 SS G_CDS: 3.87 Total: -49.95 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -5.21 Total: -114.53 kcal Atomic # 8 Polarization: -124.28 SS G_CDS: -4.58 Total: -128.86 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 145.71 SS G_CDS: -0.28 Total: 145.43 kcal Total: -73.61 -3.96 -77.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389977860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.563 kcal (2) G-P(sol) polarization free energy of solvation -73.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds