Wall clock time and date at job start Mon Mar 30 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00166 * 2 1 4 4 C 1.46904 * 110.99625 * 123.95143 * 2 1 3 5 5 C 1.53002 * 109.46999 * 71.53426 * 4 2 1 6 6 N 1.46507 * 112.90680 * 43.34731 * 5 4 2 7 7 S 1.65598 * 120.00268 * 76.18373 * 6 5 4 8 8 O 1.42094 * 106.40130 * 182.97882 * 7 6 5 9 9 O 1.42098 * 106.40068 * 315.90043 * 7 6 5 10 10 C 1.76201 * 107.21524 * 69.43865 * 7 6 5 11 11 H 1.08004 * 120.00056 * 5.57884 * 10 7 6 12 12 C 1.37883 * 120.00014 * 185.57712 * 10 7 6 13 13 N 1.31514 * 119.99728 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00159 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.46979 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47284 * 119.99860 * 14 12 10 17 17 H 1.48499 * 109.46772 * 239.99889 * 14 12 10 18 18 C 1.53782 * 113.61515 * 174.59395 * 5 4 2 19 19 C 1.53775 * 87.08174 * 139.98370 * 18 5 4 20 20 C 1.53778 * 113.61719 * 272.09068 * 5 4 2 21 21 H 1.09001 * 109.46935 * 290.89032 * 1 2 3 22 22 H 1.09008 * 109.46673 * 50.88142 * 1 2 3 23 23 H 1.08996 * 109.47619 * 170.87820 * 1 2 3 24 24 H 1.08996 * 109.46886 * 183.95253 * 3 2 1 25 25 H 1.09000 * 109.47025 * 303.95264 * 3 2 1 26 26 H 1.09002 * 109.47381 * 63.95258 * 3 2 1 27 27 H 1.09004 * 109.46996 * 311.53635 * 4 2 1 28 28 H 1.08999 * 109.46988 * 191.53862 * 4 2 1 29 29 H 0.97006 * 119.99705 * 256.18575 * 6 5 4 30 30 H 0.97002 * 119.99875 * 180.02562 * 13 12 10 31 31 H 1.09001 * 113.61136 * 25.43021 * 18 5 4 32 32 H 1.09001 * 113.69056 * 254.54639 * 18 5 4 33 33 H 1.08997 * 113.61701 * 89.11580 * 19 18 5 34 34 H 1.08999 * 113.61377 * 220.01987 * 19 18 5 35 35 H 1.09007 * 113.61250 * 105.47188 * 20 5 4 36 36 H 1.08997 * 113.61551 * 334.56970 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.7516 -2.2583 0.9043 6 7 2.0527 -2.6777 -0.4668 7 16 3.6259 -2.8665 -0.9483 8 8 3.5854 -3.2048 -2.3278 9 8 4.3373 -1.7446 -0.4437 10 6 4.2626 -4.2783 -0.1082 11 1 3.6088 -4.8842 0.5017 12 6 5.5955 -4.6097 -0.2294 13 7 6.3917 -3.8716 -0.9716 14 14 6.2704 -6.1069 0.6607 15 1 5.1785 -6.7627 1.4243 16 1 6.8256 -7.0633 -0.3302 17 1 7.3436 -5.6845 1.5961 18 6 2.3831 -3.1609 1.9773 19 6 1.1052 -4.0128 1.9005 20 6 0.3841 -2.7458 1.4113 21 1 -0.3633 0.3665 0.9601 22 1 -0.3633 0.6484 -0.7974 23 1 -0.3634 -1.0146 -0.1629 24 1 3.0828 1.3431 -0.0708 25 1 1.5899 1.9163 -0.8524 26 1 1.7045 1.8724 0.9233 27 1 1.4894 -0.4537 2.0512 28 1 3.0656 -0.5834 1.2346 29 1 1.3306 -2.8448 -1.0926 30 1 7.3293 -4.1050 -1.0572 31 1 2.5207 -2.6657 2.9385 32 1 3.2775 -3.6838 1.6387 33 1 1.1525 -4.8045 1.1528 34 1 0.7570 -4.3662 2.8711 35 1 -0.3356 -2.9332 0.6143 36 1 -0.0249 -2.1372 2.2178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393580776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:23 Heat of formation + Delta-G solvation = -59.091233 kcal Electronic energy + Delta-G solvation = -19620.910459 eV Core-core repulsion = 16653.596867 eV Total energy + Delta-G solvation = -2967.313592 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.39169 -36.16604 -34.98359 -33.74893 -33.07360 -31.49854 -27.93774 -27.42357 -26.40745 -24.93412 -23.30543 -20.78389 -19.22829 -18.53654 -17.16844 -16.21676 -15.49985 -15.20134 -15.07387 -14.71341 -14.28036 -14.07468 -13.86737 -13.19802 -12.65872 -12.28896 -12.04133 -11.99174 -11.84186 -11.80004 -11.37096 -11.22332 -11.18492 -10.91791 -10.59601 -10.47466 -10.26841 -10.15841 -10.06709 -9.93853 -9.45985 -9.14428 -8.75992 -8.32687 -7.88420 -6.63929 -5.23285 2.52144 3.07617 3.16871 3.23390 4.10477 4.30808 4.68437 4.73141 4.96290 5.10102 5.24381 5.33688 5.48519 5.55723 5.67966 5.71553 5.88198 5.93580 5.96612 6.05345 6.06209 6.14022 6.21020 6.25501 6.39973 6.52310 6.66149 6.77035 6.93891 7.12635 7.37953 7.43387 7.49228 8.02176 8.18477 8.94213 10.29225 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025802 B = 0.008692 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.918294 B = 3220.735460 C = 3755.511469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.532 5.532 3 C 0.026 3.974 4 C 0.050 3.950 5 C 0.181 3.819 6 N -1.100 6.100 7 S 2.725 3.275 8 O -1.018 7.018 9 O -0.996 6.996 10 C -1.025 5.025 11 H 0.108 0.892 12 C 0.134 3.866 13 N -0.842 5.842 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.272 1.272 17 H -0.272 1.272 18 C -0.183 4.183 19 C -0.135 4.135 20 C -0.140 4.140 21 H 0.017 0.983 22 H 0.059 0.941 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.016 0.984 27 H 0.034 0.966 28 H 0.098 0.902 29 H 0.401 0.599 30 H 0.289 0.711 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.393 3.523 6.569 12.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.255 5.255 3 C -0.123 4.123 4 C -0.080 4.080 5 C 0.089 3.911 6 N -0.852 5.852 7 S 2.824 3.176 8 O -1.009 7.009 9 O -0.986 6.986 10 C -1.158 5.158 11 H 0.126 0.874 12 C -0.084 4.084 13 N -0.472 5.472 14 Si 0.738 3.262 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.221 4.221 19 C -0.172 4.172 20 C -0.178 4.178 21 H 0.036 0.964 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.035 0.965 27 H 0.052 0.948 28 H 0.116 0.884 29 H 0.232 0.768 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.464 3.969 5.553 11.668 hybrid contribution -0.315 -0.894 1.330 1.633 sum -9.779 3.075 6.883 12.347 Atomic orbital electron populations 1.22476 0.88430 1.02311 0.99264 1.61745 1.06771 1.13128 1.43833 1.22395 1.01749 0.88822 0.99293 1.22678 1.02117 0.93178 0.90017 1.20646 0.95931 0.91527 0.82974 1.55443 1.27045 1.85445 1.17233 1.00138 0.69507 0.75120 0.72832 1.93356 1.85677 1.86318 1.35503 1.93323 1.70294 1.53721 1.81226 1.30881 1.03927 1.34097 1.46847 0.87382 1.24723 0.95389 0.96446 0.91832 1.69923 1.07341 1.36779 1.33139 0.86238 0.79225 0.81091 0.79675 1.18552 1.19729 1.19706 1.23926 1.01218 0.98385 0.98610 1.22730 0.96861 0.96713 1.00893 1.23314 0.96157 0.97995 1.00368 0.96420 0.92216 0.91142 0.90650 0.91977 0.96504 0.94841 0.88419 0.76836 0.90094 0.89878 0.86065 0.89799 0.92080 0.91388 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.06 60.07 0.54 0.86 16 2 N -0.53 -8.78 4.58 -251.25 -1.15 -9.93 16 3 C 0.03 0.38 9.53 60.06 0.57 0.95 16 4 C 0.05 0.85 4.21 -3.82 -0.02 0.83 16 5 C 0.18 3.12 0.64 -131.00 -0.08 3.04 16 6 N -1.10 -22.15 5.15 1.20 0.01 -22.15 16 7 S 2.73 72.21 4.90 -107.50 -0.53 71.68 16 8 O -1.02 -30.58 18.02 -57.17 -1.03 -31.61 16 9 O -1.00 -28.43 16.02 -57.17 -0.92 -29.34 16 10 C -1.03 -27.44 7.55 30.60 0.23 -27.21 16 11 H 0.11 2.63 6.44 -52.48 -0.34 2.29 16 12 C 0.13 3.68 5.46 -17.82 -0.10 3.59 16 13 N -0.84 -24.64 13.08 55.43 0.72 -23.91 16 14 Si 0.91 20.31 29.54 -169.99 -5.02 15.29 16 15 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 C -0.18 -3.15 7.04 -25.92 -0.18 -3.33 16 19 C -0.13 -1.95 7.99 -25.92 -0.21 -2.16 16 20 C -0.14 -1.88 5.83 -25.92 -0.15 -2.04 16 21 H 0.02 0.21 8.01 -51.93 -0.42 -0.21 16 22 H 0.06 0.71 8.03 -51.92 -0.42 0.29 16 23 H 0.07 0.90 5.97 -51.93 -0.31 0.59 16 24 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 25 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 26 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.03 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.10 1.94 6.88 -51.93 -0.36 1.58 16 29 H 0.40 7.25 8.89 -34.47 -0.31 6.94 16 30 H 0.29 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.12 2.48 3.91 -51.93 -0.20 2.28 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.85 7.48 -51.92 -0.39 0.47 16 36 H 0.08 0.94 7.89 -51.93 -0.41 0.53 16 LS Contribution 298.10 15.07 4.49 4.49 Total: -1.00 -33.90 298.10 -8.02 -41.92 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.21 Total: 9.03 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 0.61 Total: -25.47 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.42 Total: -55.99 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -1.95 Total: -60.95 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 72.21 SS G_CDS: -0.53 Total: 71.68 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.90 -8.02 -41.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393580776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.175 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds