Wall clock time and date at job start Mon Mar 30 2020 05:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 111.00166 * 2 1 4 4 C 1.46904 * 110.99625 * 123.95143 * 2 1 3 5 5 C 1.53002 * 109.46999 * 71.53426 * 4 2 1 6 6 N 1.46507 * 112.90680 * 43.34731 * 5 4 2 7 7 S 1.65598 * 120.00268 * 76.18373 * 6 5 4 8 8 O 1.42094 * 106.40130 * 182.97882 * 7 6 5 9 9 O 1.42098 * 106.40068 * 315.90043 * 7 6 5 10 10 C 1.76201 * 107.21524 * 69.43865 * 7 6 5 11 11 H 1.08004 * 120.00056 * 5.57884 * 10 7 6 12 12 C 1.37883 * 120.00014 * 185.57712 * 10 7 6 13 13 N 1.31514 * 119.99728 * 0.02562 * 12 10 7 14 14 Si 1.86797 * 120.00159 * 180.02562 * 12 10 7 15 15 H 1.48502 * 109.46979 * 359.97438 * 14 12 10 16 16 H 1.48490 * 109.47284 * 119.99860 * 14 12 10 17 17 H 1.48499 * 109.46772 * 239.99889 * 14 12 10 18 18 C 1.53782 * 113.61515 * 174.59395 * 5 4 2 19 19 C 1.53775 * 87.08174 * 139.98370 * 18 5 4 20 20 C 1.53778 * 113.61719 * 272.09068 * 5 4 2 21 21 H 1.09001 * 109.46935 * 290.89032 * 1 2 3 22 22 H 1.09008 * 109.46673 * 50.88142 * 1 2 3 23 23 H 1.08996 * 109.47619 * 170.87820 * 1 2 3 24 24 H 1.08996 * 109.46886 * 183.95253 * 3 2 1 25 25 H 1.09000 * 109.47025 * 303.95264 * 3 2 1 26 26 H 1.09002 * 109.47381 * 63.95258 * 3 2 1 27 27 H 1.09004 * 109.46996 * 311.53635 * 4 2 1 28 28 H 1.08999 * 109.46988 * 191.53862 * 4 2 1 29 29 H 0.97006 * 119.99705 * 256.18575 * 6 5 4 30 30 H 0.97002 * 119.99875 * 180.02562 * 13 12 10 31 31 H 1.09001 * 113.61136 * 25.43021 * 18 5 4 32 32 H 1.09001 * 113.69056 * 254.54639 * 18 5 4 33 33 H 1.08997 * 113.61701 * 89.11580 * 19 18 5 34 34 H 1.08999 * 113.61377 * 220.01987 * 19 18 5 35 35 H 1.09007 * 113.61250 * 105.47188 * 20 5 4 36 36 H 1.08997 * 113.61551 * 334.56970 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.7516 -2.2583 0.9043 6 7 2.0527 -2.6777 -0.4668 7 16 3.6259 -2.8665 -0.9483 8 8 3.5854 -3.2048 -2.3278 9 8 4.3373 -1.7446 -0.4437 10 6 4.2626 -4.2783 -0.1082 11 1 3.6088 -4.8842 0.5017 12 6 5.5955 -4.6097 -0.2294 13 7 6.3917 -3.8716 -0.9716 14 14 6.2704 -6.1069 0.6607 15 1 5.1785 -6.7627 1.4243 16 1 6.8256 -7.0633 -0.3302 17 1 7.3436 -5.6845 1.5961 18 6 2.3831 -3.1609 1.9773 19 6 1.1052 -4.0128 1.9005 20 6 0.3841 -2.7458 1.4113 21 1 -0.3633 0.3665 0.9601 22 1 -0.3633 0.6484 -0.7974 23 1 -0.3634 -1.0146 -0.1629 24 1 3.0828 1.3431 -0.0708 25 1 1.5899 1.9163 -0.8524 26 1 1.7045 1.8724 0.9233 27 1 1.4894 -0.4537 2.0512 28 1 3.0656 -0.5834 1.2346 29 1 1.3306 -2.8448 -1.0926 30 1 7.3293 -4.1050 -1.0572 31 1 2.5207 -2.6657 2.9385 32 1 3.2775 -3.6838 1.6387 33 1 1.1525 -4.8045 1.1528 34 1 0.7570 -4.3662 2.8711 35 1 -0.3356 -2.9332 0.6143 36 1 -0.0249 -2.1372 2.2178 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393580776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:23 Heat of formation + Delta-G solvation = -87.475569 kcal Electronic energy + Delta-G solvation = -19622.141296 eV Core-core repulsion = 16653.596867 eV Total energy + Delta-G solvation = -2968.544429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67438 -37.35742 -37.19616 -35.94440 -35.15100 -33.07347 -29.24237 -28.61159 -28.28783 -26.25216 -24.50604 -22.01784 -20.98657 -20.21213 -19.05559 -18.11252 -17.05209 -16.89488 -16.41739 -16.00078 -15.79344 -15.74060 -15.36977 -15.02187 -14.04287 -13.90230 -13.55945 -13.30451 -13.10837 -13.01589 -12.99077 -12.80729 -12.53170 -12.42338 -12.37978 -12.27169 -12.22947 -11.85098 -11.57585 -11.52412 -11.22102 -10.77167 -10.74131 -9.91971 -9.06695 -8.68232 -7.36422 0.53147 1.34359 1.36365 1.52735 2.24419 2.63633 3.03244 3.19954 3.67620 3.81489 3.96247 4.07024 4.13118 4.36427 4.40228 4.50605 4.60915 4.69798 4.77105 4.83832 4.90879 4.91897 5.01594 5.05993 5.13093 5.17078 5.21464 5.37023 5.44686 5.50204 5.73752 5.99379 6.22182 6.34407 6.63249 6.85067 8.27191 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025802 B = 0.008692 C = 0.007454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.918294 B = 3220.735460 C = 3755.511469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.562 5.562 3 C 0.027 3.973 4 C 0.052 3.948 5 C 0.160 3.840 6 N -1.085 6.085 7 S 2.727 3.273 8 O -1.065 7.065 9 O -1.028 7.028 10 C -1.032 5.032 11 H 0.128 0.872 12 C 0.071 3.929 13 N -0.895 5.895 14 Si 0.983 3.017 15 H -0.243 1.243 16 H -0.264 1.264 17 H -0.261 1.261 18 C -0.197 4.197 19 C -0.128 4.128 20 C -0.116 4.116 21 H 0.037 0.963 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.411 0.589 30 H 0.296 0.704 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 2.672 8.662 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.286 5.286 3 C -0.121 4.121 4 C -0.078 4.078 5 C 0.070 3.930 6 N -0.841 5.841 7 S 2.827 3.173 8 O -1.055 7.055 9 O -1.017 7.017 10 C -1.165 5.165 11 H 0.145 0.855 12 C -0.142 4.142 13 N -0.527 5.527 14 Si 0.802 3.198 15 H -0.166 1.166 16 H -0.189 1.189 17 H -0.186 1.186 18 C -0.235 4.235 19 C -0.166 4.166 20 C -0.154 4.154 21 H 0.055 0.945 22 H 0.088 0.912 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.244 0.756 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.779 3.137 7.636 14.384 hybrid contribution 0.338 -0.543 0.690 0.941 sum -11.440 2.595 8.326 14.385 Atomic orbital electron populations 1.22529 0.86076 1.03015 1.00759 1.61696 1.09080 1.13781 1.44040 1.22357 0.99963 0.88770 1.01041 1.22574 1.00160 0.93353 0.91689 1.21068 0.99172 0.91739 0.81021 1.54796 1.24862 1.85344 1.19136 0.99696 0.70774 0.74902 0.71914 1.93283 1.86984 1.86812 1.38423 1.93281 1.72208 1.54884 1.81353 1.31149 1.04581 1.34223 1.46580 0.85451 1.25957 0.95842 0.99886 0.92482 1.70030 1.08153 1.39211 1.35261 0.85198 0.79146 0.76780 0.78688 1.16587 1.18899 1.18555 1.24003 1.00942 0.99181 0.99424 1.22710 0.95133 0.96586 1.02149 1.23257 0.93984 0.96997 1.01198 0.94452 0.91226 0.90737 0.93677 0.90514 0.94393 0.91832 0.92463 0.75595 0.89451 0.87863 0.89718 0.91009 0.89249 0.89945 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.06 127.69 1.16 1.71 16 2 N -0.56 -17.90 4.58 -948.81 -4.35 -22.24 16 3 C 0.03 0.78 9.53 127.69 1.22 2.00 16 4 C 0.05 1.72 4.21 86.30 0.36 2.08 16 5 C 0.16 5.27 0.64 4.13 0.00 5.27 16 6 N -1.08 -43.54 5.15 -150.12 -0.77 -44.32 16 7 S 2.73 149.14 4.90 -56.49 -0.28 148.86 16 8 O -1.06 -66.46 18.02 -128.00 -2.31 -68.77 16 9 O -1.03 -61.51 16.02 -128.00 -2.05 -63.56 16 10 C -1.03 -56.07 7.55 67.74 0.51 -55.56 16 11 H 0.13 6.18 6.44 -2.91 -0.02 6.16 16 12 C 0.07 3.93 5.46 84.66 0.46 4.40 16 13 N -0.89 -54.03 13.08 21.45 0.28 -53.75 16 14 Si 0.98 41.29 29.54 68.60 2.03 43.32 16 15 H -0.24 -9.37 7.11 99.48 0.71 -8.66 16 16 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 17 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 18 C -0.20 -6.45 7.04 31.12 0.22 -6.23 16 19 C -0.13 -3.29 7.99 31.12 0.25 -3.04 16 20 C -0.12 -2.64 5.83 31.12 0.18 -2.46 16 21 H 0.04 0.72 8.01 -2.39 -0.02 0.70 16 22 H 0.07 1.46 8.03 -2.38 -0.02 1.44 16 23 H 0.07 1.64 5.97 -2.39 -0.01 1.63 16 24 H 0.04 1.55 8.09 -2.39 -0.02 1.53 16 25 H 0.08 1.95 8.06 -2.39 -0.02 1.93 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16 28 H 0.06 2.33 6.88 -2.39 -0.02 2.32 16 29 H 0.41 14.65 8.89 -96.74 -0.86 13.79 16 30 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16 31 H 0.10 2.88 8.10 -2.39 -0.02 2.86 16 32 H 0.08 3.45 3.91 -2.39 -0.01 3.44 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.70 7.48 -2.38 -0.02 1.68 16 36 H 0.11 1.95 7.89 -2.39 -0.02 1.93 16 Total: -1.00 -76.73 298.10 -2.86 -79.59 By element: Atomic # 1 Polarization: 32.47 SS G_CDS: 0.22 Total: 32.70 kcal Atomic # 6 Polarization: -56.19 SS G_CDS: 4.36 Total: -51.83 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -4.84 Total: -120.32 kcal Atomic # 8 Polarization: -127.97 SS G_CDS: -4.36 Total: -132.33 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 149.14 SS G_CDS: -0.28 Total: 148.86 kcal Total: -76.73 -2.86 -79.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393580776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.881 kcal (2) G-P(sol) polarization free energy of solvation -76.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds