Wall clock time and date at job start Mon Mar 30 2020 05:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 S 1.81399 * 109.47314 * 179.97438 * 14 13 12 16 16 O 1.42096 * 110.54445 * 291.62669 * 15 14 13 17 17 O 1.42100 * 110.54111 * 68.37841 * 15 14 13 18 18 N 1.65603 * 104.44781 * 180.02562 * 15 14 13 19 19 C 1.46490 * 120.00086 * 65.00100 * 18 15 14 20 20 C 1.53004 * 117.50064 * 213.74411 * 19 18 15 21 21 C 1.53005 * 117.49933 * 145.08487 * 19 18 15 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 27 27 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 28 28 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 29 29 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 30 30 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 31 31 H 0.97003 * 119.99175 * 245.00409 * 18 15 14 32 32 H 1.08998 * 115.55419 * 359.42060 * 19 18 15 33 33 H 1.09002 * 117.49502 * 0.02562 * 20 19 18 34 34 H 1.08997 * 117.49785 * 145.02363 * 20 19 18 35 35 H 1.08999 * 117.50237 * 214.98129 * 21 19 18 36 36 H 1.09000 * 117.49562 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 16 2.6731 0.5973 4.9913 16 8 3.6898 1.5708 4.7970 17 8 1.3658 0.9749 5.4006 18 7 3.2370 -0.3385 6.2358 19 6 4.5895 -0.8981 6.1768 20 6 4.8142 -2.2714 6.8130 21 6 5.3640 -1.0141 7.4913 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1611 -3.4845 26 1 2.9173 -1.1204 1.0288 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6164 2.5525 29 1 1.9183 -1.3563 3.8031 30 1 3.5904 -0.9270 3.3692 31 1 2.6716 -0.5160 7.0037 32 1 5.1576 -0.6611 5.2773 33 1 3.9555 -2.7586 7.2750 34 1 5.5304 -2.9377 6.3321 35 1 6.4416 -0.8538 7.4564 36 1 4.8673 -0.6735 8.3998 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393728081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:45 Heat of formation + Delta-G solvation = -49.906789 kcal Electronic energy + Delta-G solvation = -17803.307829 eV Core-core repulsion = 14836.392504 eV Total energy + Delta-G solvation = -2966.915325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.06102 -37.05178 -36.36529 -35.94526 -33.18939 -32.35512 -30.74805 -27.37467 -25.24287 -22.72422 -22.49131 -22.37195 -19.93959 -19.58453 -17.82889 -16.82419 -16.68266 -16.12422 -15.64110 -14.99455 -14.89281 -14.49103 -13.80736 -13.46671 -13.20665 -12.70147 -12.47678 -12.20202 -12.17517 -12.07559 -11.99400 -11.86314 -11.53480 -11.18124 -11.07806 -10.88125 -10.75866 -10.66263 -10.32059 -10.17123 -9.95257 -9.29870 -8.89107 -8.53062 -7.45131 -6.07132 -4.14489 0.21005 2.57567 3.26748 3.33598 3.36817 3.47354 3.74720 4.17979 4.35979 4.45819 4.55591 4.61739 4.62281 4.82151 4.99860 5.23076 5.32404 5.37379 5.55965 5.63221 5.76663 5.86288 5.93287 6.07522 6.68381 6.81913 7.08737 7.14661 7.40671 7.71588 7.81521 8.19881 8.26724 8.54382 8.94213 9.51590 10.99269 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.004065 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.319729 B = 6885.934131 C = 7381.664603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.207 3.793 3 H 0.005 0.995 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.678 5.678 13 C 0.069 3.931 14 C -0.615 4.615 15 S 2.612 3.388 16 O -0.956 6.956 17 O -0.957 6.957 18 N -1.093 6.093 19 C 0.082 3.918 20 C -0.191 4.191 21 C -0.187 4.187 22 H 0.033 0.967 23 H 0.006 0.994 24 H 0.083 0.917 25 H 0.262 0.738 26 H 0.333 0.667 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.140 0.860 30 H 0.128 0.872 31 H 0.416 0.584 32 H 0.137 0.863 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -4.873 17.878 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.099 3.901 3 H 0.023 0.977 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.311 5.311 13 C -0.063 4.063 14 C -0.746 4.746 15 S 2.705 3.295 16 O -0.945 6.945 17 O -0.947 6.947 18 N -0.848 5.848 19 C -0.026 4.026 20 C -0.230 4.230 21 C -0.227 4.227 22 H 0.052 0.948 23 H 0.025 0.975 24 H 0.101 0.899 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.158 0.842 30 H 0.146 0.854 31 H 0.250 0.750 32 H 0.155 0.845 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.093 -4.012 17.789 19.227 hybrid contribution 0.916 -0.735 -0.966 1.521 sum 7.009 -4.748 16.823 18.833 Atomic orbital electron populations 1.21747 0.97636 0.99551 0.99653 1.19206 0.92898 0.92603 0.85357 0.97741 1.21217 1.31776 1.12676 0.90330 0.92118 1.24933 0.94958 0.95000 0.99114 1.69896 1.36330 1.22821 1.23620 0.86486 0.78490 0.79985 0.82357 1.20709 1.19847 1.21147 1.60799 1.32207 1.32382 1.05663 1.21581 1.00535 0.94023 0.90182 1.30630 1.10964 1.16729 1.16280 1.04988 0.73857 0.75165 0.75443 1.93602 1.59056 1.56121 1.85750 1.93607 1.39489 1.81118 1.80508 1.55302 1.21849 1.70998 1.36606 1.21345 0.84154 0.98247 0.98887 1.23452 1.03854 0.91288 1.04453 1.23368 1.00702 1.01765 0.96834 0.94794 0.97503 0.89863 0.92796 0.84922 0.94536 0.90265 0.84196 0.85400 0.74979 0.84517 0.88244 0.87783 0.87862 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.19 37.16 0.34 -2.85 16 2 C 0.21 5.23 2.60 -68.87 -0.18 5.05 16 3 H 0.00 0.14 7.80 -51.92 -0.40 -0.27 16 4 C -0.52 -14.15 8.59 -34.44 -0.30 -14.45 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.67 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 N -0.68 -14.10 6.30 -107.95 -0.68 -14.79 16 13 C 0.07 1.21 5.49 -3.82 -0.02 1.18 16 14 C -0.61 -7.66 6.33 37.16 0.24 -7.42 16 15 S 2.61 32.83 5.44 -107.50 -0.58 32.25 16 16 O -0.96 -15.11 17.81 -57.54 -1.02 -16.14 16 17 O -0.96 -15.09 18.08 -57.54 -1.04 -16.13 16 18 N -1.09 -9.92 5.93 -4.89 -0.03 -9.95 16 19 C 0.08 0.66 6.34 -67.93 -0.43 0.23 16 20 C -0.19 -1.20 10.46 -26.69 -0.28 -1.48 16 21 C -0.19 -1.26 10.46 -26.69 -0.28 -1.54 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 24 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.33 6.54 8.22 -39.29 -0.32 6.22 16 27 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 28 H 0.08 1.42 7.44 -51.93 -0.39 1.04 16 29 H 0.14 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.42 3.08 8.92 -34.47 -0.31 2.77 16 32 H 0.14 1.01 8.11 -51.93 -0.42 0.59 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -33.81 315.50 -9.46 -43.26 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.46 Total: 5.06 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.00 Total: -19.67 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.08 Total: -49.40 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -2.07 Total: -32.27 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 32.83 SS G_CDS: -0.58 Total: 32.25 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.81 -9.46 -43.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393728081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.643 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds