Wall clock time and date at job start Mon Mar 30 2020 05:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 S 1.81399 * 109.47314 * 179.97438 * 14 13 12 16 16 O 1.42096 * 110.54445 * 291.62669 * 15 14 13 17 17 O 1.42100 * 110.54111 * 68.37841 * 15 14 13 18 18 N 1.65603 * 104.44781 * 180.02562 * 15 14 13 19 19 C 1.46490 * 120.00086 * 65.00100 * 18 15 14 20 20 C 1.53004 * 117.50064 * 213.74411 * 19 18 15 21 21 C 1.53005 * 117.49933 * 145.08487 * 19 18 15 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 27 27 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 28 28 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 29 29 H 1.08993 * 109.47298 * 300.00353 * 14 13 12 30 30 H 1.09009 * 109.46890 * 59.99830 * 14 13 12 31 31 H 0.97003 * 119.99175 * 245.00409 * 18 15 14 32 32 H 1.08998 * 115.55419 * 359.42060 * 19 18 15 33 33 H 1.09002 * 117.49502 * 0.02562 * 20 19 18 34 34 H 1.08997 * 117.49785 * 145.02363 * 20 19 18 35 35 H 1.08999 * 117.50237 * 214.98129 * 21 19 18 36 36 H 1.09000 * 117.49562 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 16 2.6731 0.5973 4.9913 16 8 3.6898 1.5708 4.7970 17 8 1.3658 0.9749 5.4006 18 7 3.2370 -0.3385 6.2358 19 6 4.5895 -0.8981 6.1768 20 6 4.8142 -2.2714 6.8130 21 6 5.3640 -1.0141 7.4913 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1611 -3.4845 26 1 2.9173 -1.1204 1.0288 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6164 2.5525 29 1 1.9183 -1.3563 3.8031 30 1 3.5904 -0.9270 3.3692 31 1 2.6716 -0.5160 7.0037 32 1 5.1576 -0.6611 5.2773 33 1 3.9555 -2.7586 7.2750 34 1 5.5304 -2.9377 6.3321 35 1 6.4416 -0.8538 7.4564 36 1 4.8673 -0.6735 8.3998 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393728081.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:45 Heat of formation + Delta-G solvation = -77.061955 kcal Electronic energy + Delta-G solvation = -17804.485365 eV Core-core repulsion = 14836.392504 eV Total energy + Delta-G solvation = -2968.092861 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.68429 -38.15569 -38.07607 -37.09794 -35.02703 -33.06815 -32.45695 -29.07814 -27.30729 -23.96665 -23.16320 -22.99737 -21.85122 -20.53966 -18.83433 -18.57690 -17.62994 -17.42815 -16.80244 -16.58510 -15.97023 -15.62262 -15.43475 -15.04100 -14.39591 -13.88338 -13.84185 -13.33085 -13.23065 -13.21113 -13.10952 -12.99778 -12.96708 -12.75853 -12.54314 -12.33071 -12.31298 -12.18068 -12.09766 -11.60568 -11.27205 -10.92042 -10.59272 -9.96567 -9.20338 -8.14621 -6.29704 -0.82013 1.43270 1.44408 1.55065 1.68607 2.40970 2.66369 2.99802 3.14397 3.20830 3.49466 3.71400 3.85706 3.95126 4.02409 4.12305 4.15566 4.36728 4.57075 4.80275 4.86390 4.87654 5.04756 5.10858 5.16622 5.28690 5.32055 5.41938 5.63916 5.81054 6.03700 6.18771 6.37502 6.68881 6.94985 7.40921 8.91424 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.032767 B = 0.004065 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.319729 B = 6885.934131 C = 7381.664603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.206 3.794 3 H -0.027 1.027 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.967 3.033 9 H -0.275 1.275 10 H -0.265 1.265 11 H -0.285 1.285 12 N -0.673 5.673 13 C 0.058 3.942 14 C -0.604 4.604 15 S 2.637 3.363 16 O -0.990 6.990 17 O -0.992 6.992 18 N -1.079 6.079 19 C 0.054 3.946 20 C -0.176 4.176 21 C -0.188 4.188 22 H 0.032 0.968 23 H 0.021 0.979 24 H 0.059 0.941 25 H 0.263 0.737 26 H 0.341 0.659 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.425 0.575 32 H 0.142 0.858 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.079 -6.738 18.626 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H -0.010 1.010 4 C -0.577 4.577 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.201 1.201 10 H -0.189 1.189 11 H -0.210 1.210 12 N -0.306 5.306 13 C -0.073 4.073 14 C -0.735 4.735 15 S 2.731 3.269 16 O -0.980 6.980 17 O -0.982 6.982 18 N -0.838 5.838 19 C -0.054 4.054 20 C -0.216 4.216 21 C -0.228 4.228 22 H 0.052 0.948 23 H 0.040 0.960 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.159 0.841 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.177 0.823 30 H 0.174 0.826 31 H 0.262 0.738 32 H 0.159 0.841 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.247 -5.884 18.570 20.784 hybrid contribution 0.592 -0.164 -1.108 1.267 sum 7.839 -6.048 17.462 20.073 Atomic orbital electron populations 1.21598 0.97676 0.99237 0.99215 1.19043 0.92982 0.91168 0.87033 1.00965 1.21572 1.31916 1.12926 0.91306 0.91645 1.25791 0.95092 0.95678 1.02258 1.70034 1.37343 1.24151 1.24294 0.85424 0.77902 0.79095 0.78383 1.20102 1.18938 1.21035 1.60672 1.32709 1.32415 1.04769 1.21648 1.00437 0.94234 0.91023 1.30517 1.12842 1.16542 1.13558 1.04006 0.72497 0.74903 0.75543 1.93558 1.59907 1.58045 1.86459 1.93556 1.41292 1.82117 1.81224 1.54871 1.22576 1.70657 1.35677 1.21655 0.83560 1.00133 1.00057 1.23535 1.04060 0.90668 1.03295 1.23484 1.01169 1.01997 0.96128 0.94840 0.95982 0.92270 0.92781 0.84099 0.95108 0.91144 0.82313 0.82616 0.73815 0.84063 0.87591 0.86484 0.86948 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 9.19 71.98 0.66 -5.35 16 2 C 0.21 10.55 2.60 44.17 0.11 10.66 16 3 H -0.03 -1.54 7.80 -2.38 -0.02 -1.56 16 4 C -0.54 -29.20 8.59 25.60 0.22 -28.98 16 5 H 0.07 3.40 7.62 -2.91 -0.02 3.38 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -53.05 11.32 21.45 0.24 -52.81 16 8 Si 0.97 42.85 29.54 68.60 2.03 44.87 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.67 -27.53 6.30 -495.44 -3.12 -30.65 16 13 C 0.06 2.01 5.49 86.30 0.47 2.48 16 14 C -0.60 -13.88 6.33 71.98 0.46 -13.43 16 15 S 2.64 63.77 5.44 -56.49 -0.31 63.46 16 16 O -0.99 -30.91 17.81 -127.65 -2.27 -33.19 16 17 O -0.99 -30.87 18.08 -127.65 -2.31 -33.18 16 18 N -1.08 -17.60 5.93 -169.39 -1.00 -18.60 16 19 C 0.05 0.74 6.34 45.00 0.29 1.02 16 20 C -0.18 -1.68 10.46 30.62 0.32 -1.36 16 21 C -0.19 -2.09 10.46 30.62 0.32 -1.77 16 22 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 24 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.34 12.95 8.22 -89.70 -0.74 12.21 16 27 H 0.03 1.10 8.06 -2.39 -0.02 1.08 16 28 H 0.07 2.54 7.44 -2.39 -0.02 2.52 16 29 H 0.16 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.16 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.43 5.49 8.92 -96.75 -0.86 4.62 16 32 H 0.14 1.78 8.11 -2.39 -0.02 1.76 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -72.29 315.50 -3.96 -76.25 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.52 Total: 19.51 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 3.30 Total: -35.66 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.88 Total: -102.06 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -4.58 Total: -66.37 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 63.77 SS G_CDS: -0.31 Total: 63.46 kcal Total: -72.29 -3.96 -76.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393728081.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.811 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds