Wall clock time and date at job start Mon Mar 30 2020 05:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.53937 * 113.74460 * 271.67660 * 14 13 12 16 16 N 1.47578 * 86.11814 * 222.04273 * 15 14 13 17 17 S 1.65597 * 134.49377 * 204.63360 * 16 15 14 18 18 C 1.81401 * 104.45153 * 270.00494 * 17 16 15 19 19 O 1.42108 * 104.27592 * 26.07806 * 17 16 15 20 20 O 1.42100 * 104.27498 * 153.93171 * 17 16 15 21 21 C 1.47578 * 91.01265 * 24.64150 * 16 15 14 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 27 27 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 28 28 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 29 29 H 1.09005 * 112.93724 * 43.41209 * 14 13 12 30 30 H 1.09000 * 113.77043 * 336.34751 * 15 14 13 31 31 H 1.09003 * 113.77189 * 107.73722 * 15 14 13 32 32 H 1.08998 * 109.46761 * 60.00164 * 18 17 16 33 33 H 1.09004 * 109.46830 * 179.97438 * 18 17 16 34 34 H 1.08993 * 109.46883 * 299.99655 * 18 17 16 35 35 H 1.09000 * 113.77092 * 221.05650 * 21 16 15 36 36 H 1.08997 * 113.77286 * 89.65819 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 1.4826 -1.2132 4.3928 16 7 2.2033 -0.7301 5.5865 17 16 2.2903 -1.2185 7.1664 18 6 0.9574 -0.3092 7.9953 19 8 1.9932 -2.6074 7.1207 20 8 3.5592 -0.7549 7.6071 21 6 2.8153 0.3632 4.8067 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 2.9173 -1.1204 1.0288 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6164 2.5525 29 1 3.4387 -1.1856 3.3501 30 1 0.4999 -0.7607 4.2597 31 1 1.4685 -2.2990 4.2975 32 1 0.0019 -0.5707 7.5407 33 1 0.9405 -0.5732 9.0528 34 1 1.1286 0.7621 7.8906 35 1 3.8655 0.5363 5.0420 36 1 2.2242 1.2789 4.7952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393760168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:38 Heat of formation + Delta-G solvation = -35.903921 kcal Electronic energy + Delta-G solvation = -17890.146858 eV Core-core repulsion = 14923.838744 eV Total energy + Delta-G solvation = -2966.308115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.34836 -37.19086 -36.05658 -35.70862 -32.63395 -30.07717 -29.64315 -27.48687 -26.18693 -25.27599 -23.61752 -20.16646 -19.78828 -18.80529 -17.64682 -16.69959 -16.29610 -16.22613 -15.25299 -14.90631 -14.57310 -13.98515 -13.66782 -13.50933 -13.29111 -13.12259 -12.79921 -12.50451 -12.22990 -12.19305 -12.14230 -11.56138 -11.27304 -11.19366 -11.00094 -10.85480 -10.66829 -10.57015 -10.18856 -10.11987 -9.82160 -9.11343 -8.84804 -8.48582 -7.29597 -6.04457 -4.10865 0.08364 2.42514 3.30539 3.35045 3.37989 3.73748 3.85576 4.36862 4.42050 4.50565 4.64453 4.72621 5.03696 5.26995 5.37541 5.38052 5.46843 5.64425 5.70658 5.75946 5.83263 6.00150 6.20206 6.49497 6.53784 6.84923 7.10549 7.20797 7.47454 7.76330 7.87520 8.25438 8.35863 8.64779 8.99528 9.55334 11.01781 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.051618 B = 0.003546 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.320191 B = 7895.266252 C = 8017.865220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.001 0.999 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.276 1.276 12 N -0.688 5.688 13 C 0.067 3.933 14 C -0.108 4.108 15 C 0.137 3.863 16 N -1.038 6.038 17 S 2.628 3.372 18 C -0.679 4.679 19 O -0.954 6.954 20 O -0.958 6.958 21 C 0.126 3.874 22 H 0.003 0.997 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.067 0.688 17.567 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.064 4.064 14 C -0.129 4.129 15 C 0.012 3.988 16 N -0.877 5.877 17 S 2.723 3.277 18 C -0.828 4.828 19 O -0.945 6.945 20 O -0.948 6.948 21 C 0.000 4.000 22 H 0.022 0.978 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.174 -0.117 18.207 18.209 hybrid contribution 0.314 0.685 -0.919 1.189 sum 0.140 0.568 17.288 17.298 Atomic orbital electron populations 1.21710 0.97921 0.99321 0.99255 1.19102 0.92588 0.92312 0.85640 0.98170 1.21237 1.31525 1.12548 0.90485 0.92232 1.24918 0.95025 0.94984 0.99060 1.69885 1.36587 1.22900 1.23576 0.86582 0.79079 0.79797 0.82052 1.21348 1.20330 1.20189 1.60730 1.32182 1.33018 1.06004 1.21917 0.99728 0.94041 0.90713 1.23181 0.98934 0.97570 0.93218 1.22856 0.95884 1.00873 0.79147 1.60306 1.60679 1.43588 1.23170 1.04353 0.75836 0.74829 0.72696 1.30659 1.21611 1.16078 1.14453 1.93604 1.86294 1.29251 1.85349 1.93589 1.37452 1.83005 1.80801 1.22864 0.98773 0.90253 0.88072 0.97803 0.90201 0.94952 0.92883 0.85148 0.95635 0.91422 0.88080 0.89708 0.89488 0.85565 0.85878 0.85685 0.89765 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.19 37.16 0.34 -2.60 16 2 C 0.21 5.10 2.60 -68.87 -0.18 4.92 16 3 H 0.00 0.02 7.80 -51.92 -0.40 -0.39 16 4 C -0.52 -13.84 8.59 -34.44 -0.30 -14.13 16 5 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.69 -13.44 6.30 -107.95 -0.68 -14.12 16 13 C 0.07 1.03 5.34 -3.82 -0.02 1.01 16 14 C -0.11 -1.32 4.09 -89.70 -0.37 -1.68 16 15 C 0.14 1.57 8.47 -2.98 -0.03 1.54 16 16 N -1.04 -11.02 3.99 -118.78 -0.47 -11.49 16 17 S 2.63 27.29 6.57 -107.50 -0.71 26.58 16 18 C -0.68 -4.41 10.99 101.05 1.11 -3.30 16 19 O -0.95 -13.35 18.02 -57.54 -1.04 -14.39 16 20 O -0.96 -12.99 18.02 -57.54 -1.04 -14.03 16 21 C 0.13 1.27 8.48 -2.98 -0.03 1.25 16 22 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 23 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.33 6.37 8.22 -39.29 -0.32 6.04 16 27 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 28 H 0.07 1.04 7.13 -51.93 -0.37 0.67 16 29 H 0.10 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.12 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 311.77 15.07 4.70 4.70 Total: -1.00 -32.86 311.77 -8.73 -41.59 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.54 Total: 0.99 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 0.45 Total: -11.42 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.53 Total: -49.91 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -2.07 Total: -28.42 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 27.29 SS G_CDS: -0.71 Total: 26.58 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.86 -8.73 -41.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393760168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.686 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds