Wall clock time and date at job start Mon Mar 30 2020 05:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 C 1.53937 * 113.74460 * 271.67660 * 14 13 12 16 16 N 1.47578 * 86.11814 * 222.04273 * 15 14 13 17 17 S 1.65597 * 134.49377 * 204.63360 * 16 15 14 18 18 C 1.81401 * 104.45153 * 270.00494 * 17 16 15 19 19 O 1.42108 * 104.27592 * 26.07806 * 17 16 15 20 20 O 1.42100 * 104.27498 * 153.93171 * 17 16 15 21 21 C 1.47578 * 91.01265 * 24.64150 * 16 15 14 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.00896 * 110.99858 * 151.05146 * 12 2 1 27 27 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 28 28 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 29 29 H 1.09005 * 112.93724 * 43.41209 * 14 13 12 30 30 H 1.09000 * 113.77043 * 336.34751 * 15 14 13 31 31 H 1.09003 * 113.77189 * 107.73722 * 15 14 13 32 32 H 1.08998 * 109.46761 * 60.00164 * 18 17 16 33 33 H 1.09004 * 109.46830 * 179.97438 * 18 17 16 34 34 H 1.08993 * 109.46883 * 299.99655 * 18 17 16 35 35 H 1.09000 * 113.77092 * 221.05650 * 21 16 15 36 36 H 1.08997 * 113.77286 * 89.65819 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 6 1.4826 -1.2132 4.3928 16 7 2.2033 -0.7301 5.5865 17 16 2.2903 -1.2185 7.1664 18 6 0.9574 -0.3092 7.9953 19 8 1.9932 -2.6074 7.1207 20 8 3.5592 -0.7549 7.6071 21 6 2.8153 0.3632 4.8067 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7088 1.1611 -3.4845 26 1 2.9173 -1.1204 1.0288 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6164 2.5525 29 1 3.4387 -1.1856 3.3501 30 1 0.4999 -0.7607 4.2597 31 1 1.4685 -2.2990 4.2975 32 1 0.0019 -0.5707 7.5407 33 1 0.9405 -0.5732 9.0528 34 1 1.1286 0.7621 7.8906 35 1 3.8655 0.5363 5.0420 36 1 2.2242 1.2789 4.7952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393760168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:38 Heat of formation + Delta-G solvation = -62.117930 kcal Electronic energy + Delta-G solvation = -17891.283583 eV Core-core repulsion = 14923.838744 eV Total energy + Delta-G solvation = -2967.444839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28674 -38.12968 -37.39510 -36.99557 -34.46890 -31.52885 -30.28748 -28.88236 -27.26092 -27.03048 -24.94624 -21.64635 -21.19081 -19.65641 -18.60682 -18.33005 -17.32029 -17.10405 -16.79830 -16.28658 -15.92801 -15.36668 -14.79470 -14.50536 -14.30933 -14.03398 -13.94703 -13.55149 -13.37310 -13.32835 -13.19021 -13.10426 -12.84707 -12.69170 -12.46420 -12.21010 -12.13324 -12.11131 -11.99522 -11.44516 -11.29712 -10.81054 -10.51824 -9.92825 -8.93189 -8.09572 -6.22790 -0.69487 1.45237 1.46629 1.53931 1.62205 2.44595 2.99194 3.05188 3.19267 3.46895 3.69139 3.96413 4.10149 4.10370 4.23126 4.56880 4.65591 4.69548 4.79108 4.86320 4.92170 4.96257 4.97954 5.04358 5.16031 5.30849 5.45097 5.56582 5.62660 5.72837 5.94830 6.29881 6.54823 6.86549 7.07846 7.47707 8.95470 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.051618 B = 0.003546 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.320191 B = 7895.266252 C = 8017.865220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H -0.028 1.028 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.958 3.042 9 H -0.285 1.285 10 H -0.272 1.272 11 H -0.273 1.273 12 N -0.687 5.687 13 C 0.071 3.929 14 C -0.110 4.110 15 C 0.137 3.863 16 N -1.043 6.043 17 S 2.635 3.365 18 C -0.652 4.652 19 O -0.998 6.998 20 O -0.996 6.996 21 C 0.133 3.867 22 H 0.027 0.973 23 H 0.052 0.948 24 H 0.026 0.974 25 H 0.262 0.738 26 H 0.332 0.668 27 H 0.022 0.978 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.086 0.914 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 1.070 18.773 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H -0.011 1.011 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.784 3.216 9 H -0.211 1.211 10 H -0.197 1.197 11 H -0.198 1.198 12 N -0.318 5.318 13 C -0.059 4.059 14 C -0.131 4.131 15 C 0.012 3.988 16 N -0.882 5.882 17 S 2.735 3.265 18 C -0.806 4.806 19 O -0.989 6.989 20 O -0.987 6.987 21 C 0.007 3.993 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.040 0.960 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.105 0.895 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.687 0.238 19.406 19.420 hybrid contribution 0.455 0.605 -1.206 1.424 sum -0.232 0.844 18.200 18.221 Atomic orbital electron populations 1.21525 0.97644 0.98788 0.99114 1.18912 0.92800 0.90805 0.86922 1.01091 1.21617 1.31558 1.12658 0.91826 0.92381 1.25684 0.95247 0.95676 1.01900 1.70011 1.37493 1.24053 1.24102 0.85611 0.78711 0.78670 0.78599 1.21078 1.19691 1.19824 1.60641 1.32257 1.33463 1.05400 1.21952 1.00149 0.93601 0.90219 1.23099 0.99137 0.98157 0.92707 1.22855 0.96334 1.00338 0.79246 1.60095 1.60986 1.43763 1.23325 1.03888 0.76114 0.74098 0.72444 1.30391 1.19190 1.16198 1.14813 1.93548 1.86916 1.32542 1.85901 1.93539 1.40658 1.83249 1.81205 1.22927 0.99590 0.90591 0.86145 0.95364 0.92871 0.95487 0.92933 0.85136 0.95976 0.90919 0.88873 0.88031 0.90607 0.83873 0.83872 0.83576 0.89525 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.33 9.19 71.98 0.66 -4.67 16 2 C 0.21 10.42 2.60 44.17 0.11 10.53 16 3 H -0.03 -1.53 7.80 -2.38 -0.02 -1.54 16 4 C -0.54 -28.86 8.59 25.60 0.22 -28.64 16 5 H 0.06 3.05 7.62 -2.91 -0.02 3.03 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -51.87 11.32 21.45 0.24 -51.62 16 8 Si 0.96 42.87 29.54 68.60 2.03 44.90 16 9 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 N -0.69 -26.65 6.30 -495.44 -3.12 -29.77 16 13 C 0.07 2.12 5.34 86.30 0.46 2.58 16 14 C -0.11 -2.56 4.09 -10.14 -0.04 -2.60 16 15 C 0.14 2.93 8.47 86.48 0.73 3.66 16 16 N -1.04 -20.32 3.99 -529.71 -2.12 -22.44 16 17 S 2.63 50.87 6.57 -56.49 -0.37 50.50 16 18 C -0.65 -5.88 10.99 113.37 1.25 -4.63 16 19 O -1.00 -27.52 18.02 -127.65 -2.30 -29.82 16 20 O -1.00 -26.18 18.02 -127.65 -2.30 -28.48 16 21 C 0.13 2.41 8.48 86.48 0.73 3.14 16 22 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 23 H 0.05 2.81 6.07 -2.39 -0.01 2.80 16 24 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.33 12.77 8.22 -89.70 -0.74 12.04 16 27 H 0.02 0.68 8.06 -2.39 -0.02 0.66 16 28 H 0.07 2.09 7.13 -2.39 -0.02 2.07 16 29 H 0.09 2.32 8.13 -2.38 -0.02 2.30 16 30 H 0.10 1.83 7.89 -2.39 -0.02 1.81 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 1.43 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -71.13 311.77 -3.04 -74.16 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.33 Total: 11.99 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.58 Total: -19.42 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -5.00 Total: -103.83 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -4.60 Total: -58.30 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 50.87 SS G_CDS: -0.37 Total: 50.50 kcal Total: -71.13 -3.04 -74.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393760168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.043 kcal (2) G-P(sol) polarization free energy of solvation -71.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds