Wall clock time and date at job start Mon Mar 30 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47234 * 2 1 4 4 C 1.50706 * 109.47128 * 119.99742 * 2 1 3 5 5 H 1.07997 * 119.99935 * 119.99619 * 4 2 1 6 6 C 1.37877 * 119.99683 * 299.99877 * 4 2 1 7 7 N 1.31514 * 119.99778 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 120.00182 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47391 * 90.00067 * 8 6 4 10 10 H 1.48508 * 109.46682 * 209.99837 * 8 6 4 11 11 H 1.48497 * 109.47145 * 329.99283 * 8 6 4 12 12 N 1.46900 * 109.47339 * 239.99703 * 2 1 3 13 13 C 1.46897 * 110.99964 * 84.99776 * 12 2 1 14 14 C 1.52999 * 109.47185 * 180.02562 * 13 12 2 15 15 C 1.53946 * 113.84014 * 86.35431 * 14 13 12 16 16 N 1.47575 * 86.11655 * 137.96445 * 15 14 13 17 17 S 1.65601 * 134.49096 * 155.36424 * 16 15 14 18 18 C 1.81401 * 104.44830 * 269.99778 * 17 16 15 19 19 O 1.42099 * 104.27767 * 26.06599 * 17 16 15 20 20 O 1.42094 * 104.28109 * 153.92931 * 17 16 15 21 21 C 1.47582 * 91.01854 * 335.36079 * 16 15 14 22 22 H 1.09000 * 109.47099 * 59.99934 * 1 2 3 23 23 H 1.08996 * 109.47176 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47255 * 300.00270 * 1 2 3 25 25 H 0.97006 * 120.00192 * 180.02562 * 7 6 4 26 26 H 1.00899 * 111.00329 * 208.95466 * 12 2 1 27 27 H 1.09003 * 109.46710 * 60.00173 * 13 12 2 28 28 H 1.08998 * 109.47144 * 300.00354 * 13 12 2 29 29 H 1.09002 * 112.94549 * 314.66891 * 14 13 12 30 30 H 1.08997 * 113.77274 * 252.27239 * 15 14 13 31 31 H 1.09007 * 113.76747 * 23.66254 * 15 14 13 32 32 H 1.09011 * 109.47211 * 59.99695 * 18 17 16 33 33 H 1.08997 * 109.47675 * 180.02562 * 18 17 16 34 34 H 1.08996 * 109.47282 * 300.00244 * 18 17 16 35 35 H 1.09005 * 113.76570 * 270.33847 * 21 16 15 36 36 H 1.08997 * 113.77023 * 138.93916 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1372 -0.8594 3.5566 8 14 0.6248 1.2792 2.6540 9 1 -0.8028 0.8728 2.6998 10 1 0.9760 1.9953 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5951 -0.5333 -3.5744 15 6 1.4901 -1.2545 -4.3674 16 7 2.1784 -0.7652 -5.5776 17 16 2.2551 -1.2695 -7.1531 18 6 3.6679 -2.4065 -7.1961 19 8 1.0393 -1.9771 -7.3541 20 8 2.5443 -0.0870 -7.8859 21 6 2.7709 0.3542 -4.8200 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.9026 -0.5282 4.4377 26 1 2.9173 -1.1206 -1.0287 27 1 2.7589 1.0461 -2.1182 28 1 1.0871 0.6162 -2.5525 29 1 3.4597 -1.1605 -3.3569 30 1 1.5084 -2.3390 -4.2596 31 1 0.4970 -0.8283 -4.2241 32 1 3.4880 -3.2356 -6.5116 33 1 3.7941 -2.7911 -8.2081 34 1 4.5707 -1.8757 -6.8943 35 1 2.1542 1.2529 -4.8097 36 1 3.8120 0.5540 -5.0736 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393760172.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:41 Heat of formation + Delta-G solvation = -56.442442 kcal Electronic energy + Delta-G solvation = -17967.845243 eV Core-core repulsion = 15000.646511 eV Total energy + Delta-G solvation = -2967.198732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28457 -38.12956 -37.56421 -36.99830 -34.48900 -32.11799 -30.29279 -29.19685 -27.15303 -27.02074 -24.98523 -21.67435 -21.12979 -19.68624 -18.83612 -18.42133 -17.38790 -17.15267 -17.06513 -16.27641 -15.74594 -15.49350 -14.96628 -14.64243 -14.43579 -14.03455 -13.95624 -13.89733 -13.68434 -13.38747 -13.21538 -13.17508 -13.10886 -12.74783 -12.62966 -12.34330 -12.03682 -11.93093 -11.59055 -11.45182 -11.29019 -10.94213 -10.73103 -9.93958 -9.02408 -8.28048 -6.31826 -0.70492 1.34386 1.38039 1.48359 1.65818 2.33825 2.99410 3.04925 3.08163 3.40182 3.72155 3.92197 4.09786 4.12297 4.18558 4.54956 4.62893 4.67311 4.72565 4.77984 4.79693 4.87883 4.93828 4.94625 4.98582 4.99880 5.09985 5.48930 5.56130 5.64108 5.69833 6.05171 6.58201 6.71985 6.93308 7.35446 8.88225 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.050954 B = 0.003757 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.383111 B = 7450.454830 C = 7577.434058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.184 3.816 3 H -0.003 1.003 4 C -0.521 4.521 5 H 0.043 0.957 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.269 1.269 10 H -0.301 1.301 11 H -0.249 1.249 12 N -0.679 5.679 13 C 0.063 3.937 14 C -0.104 4.104 15 C 0.137 3.863 16 N -1.048 6.048 17 S 2.635 3.365 18 C -0.644 4.644 19 O -1.002 7.002 20 O -0.999 6.999 21 C 0.134 3.866 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.027 0.973 25 H 0.265 0.735 26 H 0.338 0.662 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 0.466 -20.552 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 H 0.015 0.985 4 C -0.559 4.559 5 H 0.061 0.939 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.229 1.229 11 H -0.173 1.173 12 N -0.310 5.310 13 C -0.068 4.068 14 C -0.126 4.126 15 C 0.012 3.988 16 N -0.888 5.888 17 S 2.735 3.265 18 C -0.798 4.798 19 O -0.993 6.993 20 O -0.989 6.989 21 C 0.009 3.991 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.156 0.844 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.103 0.897 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.330 0.423 -21.503 21.633 hybrid contribution 0.691 0.613 1.164 1.486 sum 3.022 1.036 -20.339 20.588 Atomic orbital electron populations 1.21987 0.97583 1.00938 0.98719 1.19374 0.92619 0.92264 0.88292 0.98533 1.21445 1.31172 1.12613 0.90678 0.93854 1.25777 0.97239 0.99893 0.95494 1.70037 1.47709 1.42457 0.98594 0.85818 0.79130 0.80068 0.77089 1.19577 1.22902 1.17333 1.60455 1.32973 1.33062 1.04509 1.22051 1.00441 0.93943 0.90326 1.23194 0.99440 0.97783 0.92140 1.22786 0.96261 1.00639 0.79092 1.60001 1.63217 1.40377 1.25166 1.03821 0.76517 0.74962 0.71200 1.30300 1.19435 1.17087 1.12957 1.93543 1.44659 1.76502 1.84564 1.93537 1.87106 1.47470 1.70831 1.22856 0.99870 0.89653 0.86765 0.92476 0.93060 0.95491 0.92578 0.84363 0.95110 0.91217 0.86799 0.89210 0.90406 0.83784 0.83761 0.83411 0.89737 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.47 8.89 71.98 0.64 -4.83 16 2 C 0.18 8.01 2.19 44.17 0.10 8.11 16 3 H 0.00 -0.13 6.86 -2.38 -0.02 -0.14 16 4 C -0.52 -28.26 9.17 25.60 0.23 -28.03 16 5 H 0.04 2.59 7.86 -2.91 -0.02 2.56 16 6 C 0.01 0.77 5.45 84.65 0.46 1.23 16 7 N -0.95 -57.85 13.96 21.45 0.30 -57.55 16 8 Si 0.95 43.99 24.37 68.60 1.67 45.66 16 9 H -0.27 -12.01 6.87 99.48 0.68 -11.32 16 10 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 11 H -0.25 -10.64 6.53 99.48 0.65 -9.99 16 12 N -0.68 -23.67 6.30 -495.44 -3.12 -26.79 16 13 C 0.06 1.62 5.33 86.30 0.46 2.08 16 14 C -0.10 -1.96 4.08 -10.13 -0.04 -2.00 16 15 C 0.14 2.70 8.47 86.48 0.73 3.43 16 16 N -1.05 -18.89 3.99 -529.65 -2.12 -21.01 16 17 S 2.63 48.05 6.57 -56.49 -0.37 47.68 16 18 C -0.64 -5.32 10.99 113.37 1.25 -4.07 16 19 O -1.00 -26.66 18.02 -127.65 -2.30 -28.96 16 20 O -1.00 -25.18 18.02 -127.65 -2.30 -27.48 16 21 C 0.13 2.17 8.48 86.48 0.73 2.90 16 22 H 0.06 1.95 7.45 -2.39 -0.02 1.93 16 23 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.03 1.13 3.27 -2.38 -0.01 1.13 16 25 H 0.27 15.24 8.31 -92.70 -0.77 14.46 16 26 H 0.34 11.87 8.22 -89.69 -0.74 11.14 16 27 H 0.03 0.80 8.06 -2.39 -0.02 0.78 16 28 H 0.07 1.81 7.17 -2.39 -0.02 1.79 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.66 7.92 -2.38 -0.02 1.64 16 32 H 0.14 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 1.38 8.10 -2.38 -0.02 1.37 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -75.05 305.03 -3.42 -78.47 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.26 Total: 11.15 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.56 Total: -21.18 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -4.94 Total: -105.34 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -4.60 Total: -56.44 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.67 Total: 45.66 kcal Atomic # 16 Polarization: 48.05 SS G_CDS: -0.37 Total: 47.68 kcal Total: -75.05 -3.42 -78.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393760172.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.027 kcal (2) G-P(sol) polarization free energy of solvation -75.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds