Wall clock time and date at job start Mon Mar 30 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47183 * 127.30622 * 2 1 4 4 C 1.53203 * 109.13482 * 159.37338 * 3 2 1 5 5 N 1.47572 * 107.97282 * 34.64987 * 4 3 2 6 6 C 1.46494 * 127.96856 * 148.63613 * 5 4 3 7 7 C 1.53000 * 109.47144 * 85.00489 * 6 5 4 8 8 C 1.53000 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46812 * 179.97438 * 8 7 6 10 10 C 1.50709 * 109.47109 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99619 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99926 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00369 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99731 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47379 * 59.99778 * 14 12 10 16 16 H 1.48503 * 109.47246 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47047 * 299.99529 * 14 12 10 18 18 S 1.66956 * 127.30847 * 180.02562 * 2 1 3 19 19 O 1.42101 * 107.11285 * 294.25608 * 18 2 1 20 20 O 1.42098 * 107.11341 * 68.97257 * 18 2 1 21 21 H 1.09005 * 109.47047 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46798 * 119.97619 * 1 2 3 23 23 H 1.08996 * 109.47046 * 239.97778 * 1 2 3 24 24 H 1.08997 * 109.54759 * 39.44000 * 3 2 1 25 25 H 1.09007 * 109.51097 * 279.28455 * 3 2 1 26 26 H 1.09002 * 109.77136 * 154.28460 * 4 3 2 27 27 H 1.08995 * 109.76903 * 275.01655 * 4 3 2 28 28 H 1.09001 * 109.46905 * 205.00251 * 6 5 4 29 29 H 1.09000 * 109.46960 * 324.99871 * 6 5 4 30 30 H 1.09006 * 109.46632 * 299.99950 * 7 6 5 31 31 H 1.08999 * 109.47412 * 59.99369 * 7 6 5 32 32 H 1.08993 * 109.46982 * 299.99375 * 8 7 6 33 33 H 1.09000 * 109.47087 * 59.99917 * 8 7 6 34 34 H 1.08998 * 109.47848 * 300.00323 * 9 8 7 35 35 H 1.09000 * 109.46830 * 60.00411 * 9 8 7 36 36 H 0.96996 * 119.99871 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3570 1.1707 0.0000 4 6 3.7389 0.7492 0.5099 5 7 3.9938 -0.6290 0.0478 6 6 5.2801 -1.2424 -0.2914 7 6 5.9417 -1.7764 0.9806 8 6 7.2855 -2.4165 0.6264 9 6 7.9474 -2.9500 1.8985 10 6 9.2707 -3.5810 1.5495 11 1 9.6062 -3.5993 0.5231 12 6 10.0529 -4.1350 2.5406 13 7 9.6445 -4.1122 3.7905 14 14 11.6935 -4.9165 2.1081 15 1 12.5759 -3.9003 1.4805 16 1 12.3359 -5.4344 3.3428 17 1 11.4733 -6.0358 1.1573 18 16 2.4769 -1.3279 -0.0006 19 8 2.2866 -1.9992 1.2373 20 8 2.3428 -1.9553 -1.2685 21 1 -0.3633 1.0277 0.0005 22 1 -0.3633 -0.5135 -0.8902 23 1 -0.3633 -0.5142 0.8898 24 1 1.9471 1.9416 0.6525 25 1 2.4458 1.5608 -1.0140 26 1 4.4998 1.4190 0.1093 27 1 3.7556 0.7818 1.5992 28 1 5.1181 -2.0641 -0.9891 29 1 5.9279 -0.4967 -0.7524 30 1 6.1037 -0.9547 1.6783 31 1 5.2939 -2.5220 1.4416 32 1 7.1239 -3.2381 -0.0714 33 1 7.9331 -1.6705 0.1657 34 1 8.1090 -2.1282 2.5961 35 1 7.2999 -3.6959 2.3595 36 1 10.1951 -4.5016 4.4878 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395485185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:50 Heat of formation + Delta-G solvation = -69.321503 kcal Electronic energy + Delta-G solvation = -17991.841040 eV Core-core repulsion = 15024.083831 eV Total energy + Delta-G solvation = -2967.757210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.15384 -37.08953 -36.06478 -35.75341 -34.11706 -32.34059 -30.22971 -27.84897 -26.05456 -24.81384 -22.96670 -21.72930 -20.06617 -19.20118 -17.40485 -17.24594 -16.27413 -16.13820 -15.76073 -15.06984 -14.66152 -14.46480 -14.35137 -14.15394 -13.52692 -13.15463 -12.83396 -12.53614 -12.17891 -12.07368 -11.96047 -11.88087 -11.79048 -11.43737 -11.35286 -10.90948 -10.55388 -10.50389 -10.45631 -9.63581 -9.61810 -9.36684 -9.12268 -8.81646 -8.30278 -5.95249 -3.97857 0.33744 2.54548 3.04451 3.36123 3.40358 3.42851 3.78493 3.85633 4.49415 4.54314 4.77873 4.86885 5.09921 5.16217 5.25068 5.35542 5.38408 5.40069 5.45010 5.52601 5.57763 5.71128 6.00741 6.11417 6.22222 6.48917 6.57398 6.79014 6.94320 7.18749 7.72954 7.88229 8.05462 8.47356 9.09496 9.65899 11.16035 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.049804 B = 0.003615 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.066770 B = 7744.385800 C = 7795.971141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -1.013 6.013 3 C 0.074 3.926 4 C 0.069 3.931 5 N -0.998 5.998 6 C 0.160 3.840 7 C -0.143 4.143 8 C -0.110 4.110 9 C 0.020 3.980 10 C -0.521 4.521 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 S 2.765 3.235 19 O -0.971 6.971 20 O -0.981 6.981 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.016 0.984 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.548 14.079 -8.324 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.857 5.857 3 C -0.052 4.052 4 C -0.058 4.058 5 N -0.842 5.842 6 C 0.037 3.963 7 C -0.183 4.183 8 C -0.148 4.148 9 C -0.017 4.017 10 C -0.560 4.560 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 S 2.775 3.225 19 O -0.952 6.952 20 O -0.963 6.963 21 H 0.099 0.901 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.118 0.882 25 H 0.097 0.903 26 H 0.129 0.871 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.777 12.981 -8.209 23.493 hybrid contribution 1.054 0.173 -0.027 1.068 sum -16.723 13.154 -8.236 22.815 Atomic orbital electron populations 1.21230 0.75408 1.03510 1.01520 1.57309 1.13955 1.22048 1.92388 1.22303 0.88237 0.91223 1.03468 1.22427 0.96152 0.85812 1.01394 1.57533 1.21976 1.21107 1.83559 1.21330 0.80414 0.97085 0.97516 1.22197 0.98320 1.00917 0.96836 1.21601 0.93277 0.98863 1.01067 1.19099 0.94898 0.96027 0.91667 1.21248 1.03818 1.37241 0.93667 0.92729 1.25038 0.98188 0.96261 0.95060 1.69962 1.38024 1.45680 0.99859 0.86657 0.83995 0.79691 0.77626 1.20294 1.21339 1.20248 1.03010 0.73448 0.71579 0.74503 1.93649 1.84876 1.71128 1.45580 1.93593 1.85527 1.73757 1.43429 0.90147 0.92060 0.91945 0.88209 0.90257 0.87085 0.89651 0.90061 0.90146 0.91741 0.91874 0.93164 0.93145 0.96618 0.96542 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 0.90 11.48 59.85 0.69 1.58 16 2 N -1.01 -9.81 3.84 -121.12 -0.46 -10.27 16 3 C 0.07 0.49 7.19 -3.56 -0.03 0.47 16 4 C 0.07 0.56 7.14 -3.35 -0.02 0.54 16 5 N -1.00 -12.39 3.45 -113.46 -0.39 -12.78 16 6 C 0.16 2.17 6.51 -4.05 -0.03 2.15 16 7 C -0.14 -2.46 5.54 -26.73 -0.15 -2.61 16 8 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 14 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 S 2.77 38.73 6.18 -107.50 -0.66 38.07 16 19 O -0.97 -17.10 18.17 -57.06 -1.04 -18.14 16 20 O -0.98 -16.49 18.17 -57.06 -1.04 -17.52 16 21 H 0.08 0.34 8.13 -51.93 -0.42 -0.08 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -36.87 314.68 -9.24 -46.12 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -5.88 Total: -6.71 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -0.22 Total: -13.67 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.12 Total: -49.83 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -2.07 Total: -35.67 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 38.73 SS G_CDS: -0.66 Total: 38.07 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.87 -9.24 -46.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395485185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.206 kcal (2) G-P(sol) polarization free energy of solvation -36.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds