Wall clock time and date at job start Mon Mar 30 2020 05:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.47183 * 127.30622 * 2 1 4 4 C 1.53203 * 109.13482 * 159.37338 * 3 2 1 5 5 N 1.47572 * 107.97282 * 34.64987 * 4 3 2 6 6 C 1.46494 * 127.96856 * 148.63613 * 5 4 3 7 7 C 1.53000 * 109.47144 * 85.00489 * 6 5 4 8 8 C 1.53000 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46812 * 179.97438 * 8 7 6 10 10 C 1.50709 * 109.47109 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99619 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99926 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00369 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99731 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47379 * 59.99778 * 14 12 10 16 16 H 1.48503 * 109.47246 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47047 * 299.99529 * 14 12 10 18 18 S 1.66956 * 127.30847 * 180.02562 * 2 1 3 19 19 O 1.42101 * 107.11285 * 294.25608 * 18 2 1 20 20 O 1.42098 * 107.11341 * 68.97257 * 18 2 1 21 21 H 1.09005 * 109.47047 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46798 * 119.97619 * 1 2 3 23 23 H 1.08996 * 109.47046 * 239.97778 * 1 2 3 24 24 H 1.08997 * 109.54759 * 39.44000 * 3 2 1 25 25 H 1.09007 * 109.51097 * 279.28455 * 3 2 1 26 26 H 1.09002 * 109.77136 * 154.28460 * 4 3 2 27 27 H 1.08995 * 109.76903 * 275.01655 * 4 3 2 28 28 H 1.09001 * 109.46905 * 205.00251 * 6 5 4 29 29 H 1.09000 * 109.46960 * 324.99871 * 6 5 4 30 30 H 1.09006 * 109.46632 * 299.99950 * 7 6 5 31 31 H 1.08999 * 109.47412 * 59.99369 * 7 6 5 32 32 H 1.08993 * 109.46982 * 299.99375 * 8 7 6 33 33 H 1.09000 * 109.47087 * 59.99917 * 8 7 6 34 34 H 1.08998 * 109.47848 * 300.00323 * 9 8 7 35 35 H 1.09000 * 109.46830 * 60.00411 * 9 8 7 36 36 H 0.96996 * 119.99871 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3570 1.1707 0.0000 4 6 3.7389 0.7492 0.5099 5 7 3.9938 -0.6290 0.0478 6 6 5.2801 -1.2424 -0.2914 7 6 5.9417 -1.7764 0.9806 8 6 7.2855 -2.4165 0.6264 9 6 7.9474 -2.9500 1.8985 10 6 9.2707 -3.5810 1.5495 11 1 9.6062 -3.5993 0.5231 12 6 10.0529 -4.1350 2.5406 13 7 9.6445 -4.1122 3.7905 14 14 11.6935 -4.9165 2.1081 15 1 12.5759 -3.9003 1.4805 16 1 12.3359 -5.4344 3.3428 17 1 11.4733 -6.0358 1.1573 18 16 2.4769 -1.3279 -0.0006 19 8 2.2866 -1.9992 1.2373 20 8 2.3428 -1.9553 -1.2685 21 1 -0.3633 1.0277 0.0005 22 1 -0.3633 -0.5135 -0.8902 23 1 -0.3633 -0.5142 0.8898 24 1 1.9471 1.9416 0.6525 25 1 2.4458 1.5608 -1.0140 26 1 4.4998 1.4190 0.1093 27 1 3.7556 0.7818 1.5992 28 1 5.1181 -2.0641 -0.9891 29 1 5.9279 -0.4967 -0.7524 30 1 6.1037 -0.9547 1.6783 31 1 5.2939 -2.5220 1.4416 32 1 7.1239 -3.2381 -0.0714 33 1 7.9331 -1.6705 0.1657 34 1 8.1090 -2.1282 2.5961 35 1 7.2999 -3.6959 2.3595 36 1 10.1951 -4.5016 4.4878 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395485185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:50 Heat of formation + Delta-G solvation = -97.577219 kcal Electronic energy + Delta-G solvation = -17993.066300 eV Core-core repulsion = 15024.083831 eV Total energy + Delta-G solvation = -2968.982469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.95201 -38.27523 -37.26308 -36.91403 -35.69123 -34.11238 -31.46321 -29.23626 -26.80235 -26.38508 -24.06222 -23.03699 -21.78288 -20.22852 -18.46938 -18.31322 -18.09841 -17.21748 -16.73465 -16.47715 -15.98049 -15.88964 -15.24621 -15.02737 -14.50694 -14.44812 -14.05693 -13.78489 -13.70689 -13.33168 -13.26461 -13.19158 -12.97774 -12.70366 -12.60046 -12.36397 -12.21868 -12.19747 -11.88053 -11.38114 -11.35391 -11.17485 -10.54205 -10.25829 -9.88039 -8.18754 -6.30712 -0.67256 1.40383 1.44228 1.52001 1.69653 2.08528 2.42027 3.09368 3.13921 3.14112 3.74864 4.02460 4.06406 4.18482 4.31586 4.43794 4.61795 4.64428 4.68790 4.74772 4.84559 4.88399 4.91450 4.92685 4.95192 5.18263 5.28638 5.33100 5.55022 5.56402 5.61224 5.77829 5.87827 6.25673 6.87328 7.38809 8.93084 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.049804 B = 0.003615 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.066770 B = 7744.385800 C = 7795.971141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -1.007 6.007 3 C 0.072 3.928 4 C 0.058 3.942 5 N -1.000 6.000 6 C 0.165 3.835 7 C -0.137 4.137 8 C -0.098 4.098 9 C 0.020 3.980 10 C -0.544 4.544 11 H 0.065 0.935 12 C -0.005 4.005 13 N -0.937 5.937 14 Si 0.968 3.032 15 H -0.263 1.263 16 H -0.285 1.285 17 H -0.268 1.268 18 S 2.764 3.236 19 O -1.021 7.021 20 O -1.018 7.018 21 H 0.118 0.882 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.134 0.866 25 H 0.101 0.899 26 H 0.143 0.857 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.070 0.930 34 H -0.007 1.007 35 H -0.019 1.019 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.205 16.231 -9.922 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.854 5.854 3 C -0.053 4.053 4 C -0.067 4.067 5 N -0.845 5.845 6 C 0.041 3.959 7 C -0.176 4.176 8 C -0.137 4.137 9 C -0.018 4.018 10 C -0.582 4.582 11 H 0.083 0.917 12 C -0.203 4.203 13 N -0.577 5.577 14 Si 0.793 3.207 15 H -0.187 1.187 16 H -0.210 1.210 17 H -0.193 1.193 18 S 2.775 3.225 19 O -1.003 7.003 20 O -1.000 7.000 21 H 0.136 0.864 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.152 0.848 25 H 0.119 0.881 26 H 0.161 0.839 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.011 0.989 35 H -0.001 1.001 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.451 15.146 -9.819 25.107 hybrid contribution 0.889 -0.428 0.524 1.118 sum -16.562 14.718 -9.294 24.027 Atomic orbital electron populations 1.21551 0.73731 1.05950 1.01555 1.57099 1.14737 1.21352 1.92221 1.22606 0.86647 0.90403 1.05626 1.22833 0.98259 0.83921 1.01694 1.57303 1.20568 1.22970 1.83621 1.21194 0.81181 0.98263 0.95214 1.22075 0.96449 1.00171 0.98903 1.21410 0.94802 0.99501 0.97965 1.19053 0.94396 0.94395 0.93922 1.21739 1.04776 1.37426 0.94276 0.91708 1.26064 1.02588 0.96779 0.94835 1.70115 1.39789 1.46695 1.01113 0.85454 0.78757 0.78979 0.77560 1.18740 1.21006 1.19258 1.02680 0.74332 0.72320 0.73184 1.93590 1.85816 1.73519 1.47356 1.93541 1.86284 1.75610 1.44541 0.86399 0.91974 0.92239 0.84792 0.88084 0.83930 0.89761 0.90385 0.86637 0.91378 0.94603 0.92914 0.91173 0.98876 1.00051 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.39 11.48 127.77 1.47 2.86 16 2 N -1.01 -17.55 3.84 -537.11 -2.06 -19.61 16 3 C 0.07 0.69 7.19 86.32 0.62 1.31 16 4 C 0.06 0.78 7.14 86.24 0.62 1.40 16 5 N -1.00 -23.49 3.45 -512.87 -1.77 -25.26 16 6 C 0.17 4.26 6.51 86.38 0.56 4.82 16 7 C -0.14 -4.71 5.54 30.59 0.17 -4.54 16 8 C -0.10 -4.01 5.15 30.59 0.16 -3.86 16 9 C 0.02 1.07 4.97 29.85 0.15 1.21 16 10 C -0.54 -31.67 9.11 25.60 0.23 -31.44 16 11 H 0.06 3.55 7.74 -2.91 -0.02 3.52 16 12 C -0.01 -0.32 5.46 84.65 0.46 0.15 16 13 N -0.94 -58.82 13.29 21.45 0.28 -58.54 16 14 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 S 2.76 77.54 6.18 -56.49 -0.35 77.19 16 19 O -1.02 -37.55 18.17 -128.11 -2.33 -39.88 16 20 O -1.02 -34.70 18.17 -128.11 -2.33 -37.03 16 21 H 0.12 0.55 8.13 -2.38 -0.02 0.53 16 22 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 36 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -83.15 314.68 -1.05 -84.20 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: 1.04 Total: -0.01 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: 4.44 Total: -28.09 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -3.55 Total: -103.41 kcal Atomic # 8 Polarization: -72.26 SS G_CDS: -4.66 Total: -76.91 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 77.54 SS G_CDS: -0.35 Total: 77.19 kcal Total: -83.15 -1.05 -84.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395485185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.376 kcal (2) G-P(sol) polarization free energy of solvation -83.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds