Wall clock time and date at job start Mon Mar 30 2020 04:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.46118 * 2 1 4 4 C 1.54385 * 110.41408 * 237.58685 * 2 1 3 5 5 C 1.54264 * 105.05937 * 217.36826 * 4 2 1 6 6 H 1.08995 * 110.31937 * 118.89695 * 5 4 2 7 7 C 1.53002 * 110.31992 * 241.10098 * 5 4 2 8 8 N 1.46498 * 109.46689 * 182.09277 * 7 5 4 9 9 S 1.65606 * 119.99878 * 164.99912 * 8 7 5 10 10 O 1.42104 * 106.40266 * 178.53596 * 9 8 7 11 11 O 1.42097 * 106.40362 * 311.46002 * 9 8 7 12 12 C 1.76203 * 107.21550 * 65.00151 * 9 8 7 13 13 H 1.08003 * 120.00192 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99879 * 179.97438 * 12 9 8 15 15 N 1.31514 * 119.99748 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99888 * 359.97438 * 14 12 9 17 17 H 1.48503 * 109.47096 * 89.99839 * 16 14 12 18 18 H 1.48498 * 109.46997 * 209.99587 * 16 14 12 19 19 H 1.48501 * 109.47065 * 329.99967 * 16 14 12 20 20 C 1.54380 * 105.06204 * 359.97438 * 5 4 2 21 21 N 1.48556 * 110.41332 * 122.41082 * 2 1 3 22 22 C 1.46904 * 111.00162 * 277.82125 * 21 2 1 23 23 H 1.08999 * 109.47254 * 299.03863 * 1 2 3 24 24 H 1.09002 * 109.47125 * 59.04328 * 1 2 3 25 25 H 1.08998 * 109.47039 * 179.03796 * 1 2 3 26 26 H 1.08995 * 110.31919 * 336.26247 * 4 2 1 27 27 H 1.09000 * 110.32394 * 98.46702 * 4 2 1 28 28 H 1.08995 * 109.46897 * 302.09072 * 7 5 4 29 29 H 1.09000 * 109.47160 * 62.09243 * 7 5 4 30 30 H 0.97002 * 120.00137 * 344.99765 * 8 7 5 31 31 H 0.96997 * 119.99540 * 179.97438 * 15 14 12 32 32 H 1.08999 * 110.41013 * 265.07717 * 20 5 4 33 33 H 1.08999 * 110.40872 * 142.63103 * 20 5 4 34 34 H 1.09004 * 109.46493 * 304.45263 * 22 21 2 35 35 H 1.08994 * 109.47242 * 64.45197 * 22 21 2 36 36 H 1.08996 * 109.46974 * 184.45464 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2215 5 6 3.3178 -1.5188 -0.7053 6 1 3.1861 -2.5960 -0.8066 7 6 4.5620 -1.0603 -1.4687 8 7 5.7279 -1.8128 -0.9990 9 16 7.1289 -1.8052 -1.8819 10 8 8.0661 -2.5872 -1.1542 11 8 6.7585 -2.0863 -3.2247 12 6 7.7436 -0.1540 -1.8705 13 1 7.2045 0.6194 -1.3435 14 6 8.9129 0.1509 -2.5346 15 7 9.3714 1.3835 -2.5265 16 14 9.8457 -1.1867 -3.4456 17 1 9.3610 -1.2614 -4.8473 18 1 11.2965 -0.8702 -3.4398 19 1 9.6210 -2.4920 -2.7740 20 6 3.4295 -1.1293 0.7843 21 7 2.0481 -0.7462 1.1754 22 6 2.0568 0.1014 2.3752 23 1 -0.3634 0.4988 0.8985 24 1 -0.3633 0.5286 -0.8813 25 1 -0.3633 -1.0275 -0.0173 26 1 1.3236 -1.4880 -1.5759 27 1 2.3415 -0.0841 -2.0186 28 1 4.4202 -1.2381 -2.5347 29 1 4.7226 0.0039 -1.2960 30 1 5.6793 -2.3154 -0.1707 31 1 10.1942 1.5979 -2.9933 32 1 4.1078 -0.2849 0.9066 33 1 3.7693 -1.9799 1.3752 34 1 2.6299 1.0070 2.1759 35 1 1.0336 0.3695 2.6381 36 1 2.5135 -0.4432 3.2015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396599989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:22 Heat of formation + Delta-G solvation = -84.539971 kcal Electronic energy + Delta-G solvation = -18487.216163 eV Core-core repulsion = 15518.799031 eV Total energy + Delta-G solvation = -2968.417132 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.42579 -35.66892 -35.07952 -34.41239 -33.03060 -32.06081 -31.02455 -26.47799 -26.31425 -25.71537 -23.58805 -20.51035 -20.08950 -18.98418 -17.44838 -16.62819 -16.26303 -15.61916 -15.15188 -14.85207 -14.59908 -13.98226 -13.80404 -13.50716 -13.27861 -12.95783 -12.68531 -12.56953 -12.25472 -12.04112 -11.65299 -11.37962 -11.26828 -11.20865 -11.01108 -10.83127 -10.60305 -10.57275 -10.48822 -10.44231 -9.80389 -9.22425 -9.20849 -8.57995 -8.55650 -6.80532 -5.34229 2.09939 3.07763 3.18313 3.27707 3.91159 3.95785 4.30737 4.53696 4.59825 4.71892 4.92210 5.06175 5.22872 5.30920 5.36105 5.37292 5.39224 5.56923 5.66244 5.69796 5.76044 5.78766 5.87104 5.93449 6.01974 6.06311 6.15821 6.25365 6.35811 6.62044 6.79347 6.96227 7.47549 7.74918 8.19965 8.70731 10.31859 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036009 B = 0.005192 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.401321 B = 5391.476049 C = 5499.349898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.054 3.946 3 H 0.054 0.946 4 C -0.115 4.115 5 C -0.099 4.099 6 H 0.087 0.913 7 C 0.133 3.867 8 N -1.125 6.125 9 S 2.677 3.323 10 O -1.010 7.010 11 O -1.012 7.012 12 C -1.016 5.016 13 H 0.120 0.880 14 C 0.153 3.847 15 N -0.825 5.825 16 Si 0.803 3.197 17 H -0.246 1.246 18 H -0.255 1.255 19 H -0.220 1.220 20 C 0.033 3.967 21 N -0.513 5.513 22 C 0.013 3.987 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.405 0.595 31 H 0.280 0.720 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.066 0.934 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.750 -1.697 5.574 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 H 0.072 0.928 4 C -0.154 4.154 5 C -0.120 4.120 6 H 0.105 0.895 7 C 0.006 3.994 8 N -0.881 5.881 9 S 2.778 3.222 10 O -1.000 7.000 11 O -1.002 7.002 12 C -1.150 5.150 13 H 0.138 0.862 14 C -0.067 4.067 15 N -0.454 5.454 16 Si 0.623 3.377 17 H -0.170 1.170 18 H -0.179 1.179 19 H -0.142 1.142 20 C -0.095 4.095 21 N -0.238 5.238 22 C -0.136 4.136 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.236 0.764 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.590 -2.669 5.073 15.676 hybrid contribution 1.040 0.966 0.086 1.422 sum -13.550 -1.702 5.160 14.599 Atomic orbital electron populations 1.21697 0.93947 1.02334 1.01223 1.22711 0.95953 0.96087 0.90710 0.92841 1.22409 0.96724 0.99235 0.97049 1.22126 0.94295 1.01320 0.94218 0.89492 1.21253 0.84041 0.95462 0.98693 1.55464 1.28628 1.64819 1.39183 1.01290 0.71311 0.76942 0.72657 1.93474 1.60203 1.72845 1.73466 1.93400 1.82879 1.87112 1.36828 1.30470 1.19877 1.18311 1.46335 0.86216 1.24437 0.94774 0.95673 0.91788 1.69990 1.20505 1.18476 1.36399 0.87845 0.82111 0.84360 0.83414 1.17004 1.17940 1.14181 1.23247 0.89671 1.00915 0.95672 1.65366 1.18378 1.36980 1.03037 1.22505 1.01677 0.95751 0.93677 0.92996 0.92303 0.91869 0.90582 0.90541 0.90285 0.91956 0.76382 0.90928 0.92777 0.89990 0.95252 0.91486 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 9.35 37.15 0.35 -0.85 16 2 C 0.05 0.58 2.89 -66.07 -0.19 0.39 16 3 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 4 C -0.12 -1.28 6.20 -25.34 -0.16 -1.44 16 5 C -0.10 -1.27 3.20 -89.23 -0.29 -1.56 16 6 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 7 C 0.13 2.15 5.33 -4.04 -0.02 2.12 16 8 N -1.13 -20.98 5.90 -10.61 -0.06 -21.04 16 9 S 2.68 66.25 4.24 -107.50 -0.46 65.80 16 10 O -1.01 -27.03 16.02 -57.17 -0.92 -27.95 16 11 O -1.01 -26.86 16.31 -57.17 -0.93 -27.80 16 12 C -1.02 -28.19 10.26 30.60 0.31 -27.88 16 13 H 0.12 3.34 8.06 -52.48 -0.42 2.92 16 14 C 0.15 4.39 5.47 -17.82 -0.10 4.29 16 15 N -0.82 -23.84 13.96 55.43 0.77 -23.06 16 16 Si 0.80 20.65 26.54 -169.99 -4.51 16.14 16 17 H -0.25 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.26 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.22 -5.76 5.60 56.52 0.32 -5.44 16 20 C 0.03 0.41 5.52 -2.17 -0.01 0.40 16 21 N -0.51 -5.95 5.34 -230.33 -1.23 -7.18 16 22 C 0.01 0.13 9.42 60.07 0.57 0.69 16 23 H 0.05 0.44 7.54 -51.93 -0.39 0.05 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 26 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 27 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 28 H 0.08 1.32 7.75 -51.93 -0.40 0.91 16 29 H 0.06 1.01 8.05 -51.93 -0.42 0.60 16 30 H 0.40 6.48 8.27 -34.48 -0.29 6.19 16 31 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.05 0.72 7.62 -51.93 -0.40 0.33 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.30 7.97 -51.93 -0.41 -0.11 16 35 H 0.07 0.59 7.53 -51.93 -0.39 0.20 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 300.98 15.07 4.54 4.54 Total: -1.00 -32.54 300.98 -8.01 -40.54 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.67 Total: 3.84 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 0.46 Total: -23.84 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.52 Total: -51.28 kcal Atomic # 8 Polarization: -53.90 SS G_CDS: -1.85 Total: -55.74 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.51 Total: 16.14 kcal Atomic # 16 Polarization: 66.25 SS G_CDS: -0.46 Total: 65.80 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.54 -8.01 -40.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396599989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.996 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds