Wall clock time and date at job start Mon Mar 30 2020 04:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.46118 * 2 1 4 4 C 1.54385 * 110.41408 * 237.58685 * 2 1 3 5 5 C 1.54264 * 105.05937 * 217.36826 * 4 2 1 6 6 H 1.08995 * 110.31937 * 118.89695 * 5 4 2 7 7 C 1.53002 * 110.31992 * 241.10098 * 5 4 2 8 8 N 1.46498 * 109.46689 * 182.09277 * 7 5 4 9 9 S 1.65606 * 119.99878 * 164.99912 * 8 7 5 10 10 O 1.42104 * 106.40266 * 178.53596 * 9 8 7 11 11 O 1.42097 * 106.40362 * 311.46002 * 9 8 7 12 12 C 1.76203 * 107.21550 * 65.00151 * 9 8 7 13 13 H 1.08003 * 120.00192 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99879 * 179.97438 * 12 9 8 15 15 N 1.31514 * 119.99748 * 179.97438 * 14 12 9 16 16 Si 1.86800 * 119.99888 * 359.97438 * 14 12 9 17 17 H 1.48503 * 109.47096 * 89.99839 * 16 14 12 18 18 H 1.48498 * 109.46997 * 209.99587 * 16 14 12 19 19 H 1.48501 * 109.47065 * 329.99967 * 16 14 12 20 20 C 1.54380 * 105.06204 * 359.97438 * 5 4 2 21 21 N 1.48556 * 110.41332 * 122.41082 * 2 1 3 22 22 C 1.46904 * 111.00162 * 277.82125 * 21 2 1 23 23 H 1.08999 * 109.47254 * 299.03863 * 1 2 3 24 24 H 1.09002 * 109.47125 * 59.04328 * 1 2 3 25 25 H 1.08998 * 109.47039 * 179.03796 * 1 2 3 26 26 H 1.08995 * 110.31919 * 336.26247 * 4 2 1 27 27 H 1.09000 * 110.32394 * 98.46702 * 4 2 1 28 28 H 1.08995 * 109.46897 * 302.09072 * 7 5 4 29 29 H 1.09000 * 109.47160 * 62.09243 * 7 5 4 30 30 H 0.97002 * 120.00137 * 344.99765 * 8 7 5 31 31 H 0.96997 * 119.99540 * 179.97438 * 15 14 12 32 32 H 1.08999 * 110.41013 * 265.07717 * 20 5 4 33 33 H 1.08999 * 110.40872 * 142.63103 * 20 5 4 34 34 H 1.09004 * 109.46493 * 304.45263 * 22 21 2 35 35 H 1.08994 * 109.47242 * 64.45197 * 22 21 2 36 36 H 1.08996 * 109.46974 * 184.45464 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 -1.2215 5 6 3.3178 -1.5188 -0.7053 6 1 3.1861 -2.5960 -0.8066 7 6 4.5620 -1.0603 -1.4687 8 7 5.7279 -1.8128 -0.9990 9 16 7.1289 -1.8052 -1.8819 10 8 8.0661 -2.5872 -1.1542 11 8 6.7585 -2.0863 -3.2247 12 6 7.7436 -0.1540 -1.8705 13 1 7.2045 0.6194 -1.3435 14 6 8.9129 0.1509 -2.5346 15 7 9.3714 1.3835 -2.5265 16 14 9.8457 -1.1867 -3.4456 17 1 9.3610 -1.2614 -4.8473 18 1 11.2965 -0.8702 -3.4398 19 1 9.6210 -2.4920 -2.7740 20 6 3.4295 -1.1293 0.7843 21 7 2.0481 -0.7462 1.1754 22 6 2.0568 0.1014 2.3752 23 1 -0.3634 0.4988 0.8985 24 1 -0.3633 0.5286 -0.8813 25 1 -0.3633 -1.0275 -0.0173 26 1 1.3236 -1.4880 -1.5759 27 1 2.3415 -0.0841 -2.0186 28 1 4.4202 -1.2381 -2.5347 29 1 4.7226 0.0039 -1.2960 30 1 5.6793 -2.3154 -0.1707 31 1 10.1942 1.5979 -2.9933 32 1 4.1078 -0.2849 0.9066 33 1 3.7693 -1.9799 1.3752 34 1 2.6299 1.0070 2.1759 35 1 1.0336 0.3695 2.6381 36 1 2.5135 -0.4432 3.2015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396599989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:21 Heat of formation + Delta-G solvation = -111.311032 kcal Electronic energy + Delta-G solvation = -18488.377043 eV Core-core repulsion = 15518.799031 eV Total energy + Delta-G solvation = -2969.578012 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.37332 -37.69632 -36.49812 -36.43588 -35.19095 -33.00656 -32.06485 -28.57601 -27.39238 -26.64799 -24.64911 -21.49793 -21.29093 -20.72414 -19.43247 -18.55815 -17.66132 -17.04980 -16.52844 -16.16144 -15.73173 -15.62849 -15.22592 -15.08941 -14.83011 -14.41704 -13.95554 -13.74477 -13.42591 -13.31139 -13.07225 -12.97648 -12.70371 -12.64763 -12.56907 -12.22601 -12.03254 -11.95289 -11.86851 -11.48990 -11.46152 -11.33495 -11.20720 -10.23951 -9.47756 -8.97083 -7.53077 0.15639 1.05437 1.14788 1.22230 1.89304 2.41591 2.57764 3.02867 3.30850 3.60996 3.75295 3.87173 4.13994 4.24457 4.33458 4.41032 4.50425 4.54533 4.62147 4.66077 4.74464 4.81325 4.95092 4.96421 5.00048 5.01527 5.12333 5.27459 5.33161 5.39723 5.42849 5.89697 5.99919 6.09828 6.30326 6.53481 8.20570 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.036009 B = 0.005192 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.401321 B = 5391.476049 C = 5499.349898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.050 3.950 3 H 0.047 0.953 4 C -0.115 4.115 5 C -0.092 4.092 6 H 0.096 0.904 7 C 0.126 3.874 8 N -1.109 6.109 9 S 2.700 3.300 10 O -1.030 7.030 11 O -1.029 7.029 12 C -1.037 5.037 13 H 0.105 0.895 14 C 0.108 3.892 15 N -0.855 5.855 16 Si 0.826 3.174 17 H -0.238 1.238 18 H -0.221 1.221 19 H -0.229 1.229 20 C 0.031 3.969 21 N -0.517 5.517 22 C 0.012 3.988 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.419 0.581 31 H 0.291 0.709 32 H 0.040 0.960 33 H 0.088 0.912 34 H 0.023 0.977 35 H 0.081 0.919 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.897 -2.417 5.720 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.058 4.058 3 H 0.065 0.935 4 C -0.153 4.153 5 C -0.113 4.113 6 H 0.114 0.886 7 C 0.000 4.000 8 N -0.870 5.870 9 S 2.799 3.201 10 O -1.020 7.020 11 O -1.019 7.019 12 C -1.170 5.170 13 H 0.123 0.877 14 C -0.109 4.109 15 N -0.485 5.485 16 Si 0.643 3.357 17 H -0.161 1.161 18 H -0.143 1.143 19 H -0.151 1.151 20 C -0.097 4.097 21 N -0.242 5.242 22 C -0.137 4.137 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.254 0.746 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.099 0.901 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.718 -3.364 5.227 16.903 hybrid contribution 1.303 1.238 0.101 1.800 sum -14.415 -2.127 5.329 15.515 Atomic orbital electron populations 1.21660 0.92314 1.02586 1.02080 1.22793 0.97239 0.95538 0.90219 0.93521 1.22451 0.96111 0.99492 0.97295 1.22071 0.93176 1.01967 0.94071 0.88606 1.21485 0.84410 0.95053 0.99101 1.54976 1.27515 1.65083 1.39419 1.00431 0.71920 0.75238 0.72496 1.93437 1.62090 1.72666 1.73810 1.93373 1.83427 1.86818 1.38289 1.30985 1.19969 1.20127 1.45908 0.87685 1.25180 0.95762 0.97346 0.92614 1.70014 1.21531 1.19580 1.37382 0.87476 0.83481 0.81996 0.82763 1.16149 1.14287 1.15102 1.23240 0.90241 1.00702 0.95542 1.65409 1.17434 1.37608 1.03706 1.22558 1.02554 0.95344 0.93247 0.92497 0.91149 0.91867 0.89101 0.90413 0.90664 0.92439 0.74575 0.89858 0.94150 0.89326 0.95849 0.90081 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.35 71.98 0.67 -1.32 16 2 C 0.05 0.99 2.89 45.06 0.13 1.12 16 3 H 0.05 0.98 7.90 -2.39 -0.02 0.97 16 4 C -0.11 -2.33 6.20 31.49 0.20 -2.14 16 5 C -0.09 -2.22 3.20 -9.90 -0.03 -2.25 16 6 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 7 C 0.13 3.97 5.33 86.38 0.46 4.43 16 8 N -1.11 -40.42 5.90 -187.49 -1.11 -41.53 16 9 S 2.70 132.41 4.24 -56.49 -0.24 132.17 16 10 O -1.03 -54.45 16.02 -128.00 -2.05 -56.50 16 11 O -1.03 -53.90 16.31 -128.00 -2.09 -55.99 16 12 C -1.04 -58.13 10.26 67.74 0.69 -57.43 16 13 H 0.10 6.01 8.06 -2.91 -0.02 5.99 16 14 C 0.11 6.19 5.47 84.66 0.46 6.65 16 15 N -0.85 -49.57 13.96 21.45 0.30 -49.27 16 16 Si 0.83 41.14 26.54 68.60 1.82 42.96 16 17 H -0.24 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.22 -9.70 7.11 99.48 0.71 -8.99 16 19 H -0.23 -11.69 5.60 99.48 0.56 -11.13 16 20 C 0.03 0.73 5.52 86.44 0.48 1.20 16 21 N -0.52 -11.05 5.34 -882.62 -4.72 -15.77 16 22 C 0.01 0.21 9.42 127.69 1.20 1.42 16 23 H 0.06 0.82 7.54 -2.39 -0.02 0.80 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 26 H 0.09 1.60 7.84 -2.39 -0.02 1.58 16 27 H 0.08 1.56 7.71 -2.39 -0.02 1.54 16 28 H 0.08 2.45 7.75 -2.39 -0.02 2.43 16 29 H 0.06 1.87 8.05 -2.39 -0.02 1.85 16 30 H 0.42 12.88 8.27 -96.74 -0.80 12.08 16 31 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.04 1.06 7.62 -2.39 -0.02 1.04 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.02 0.46 7.97 -2.38 -0.02 0.44 16 35 H 0.08 1.26 7.53 -2.39 -0.02 1.25 16 36 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -67.87 300.98 -3.70 -71.57 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.11 Total: 20.67 kcal Atomic # 6 Polarization: -52.57 SS G_CDS: 4.26 Total: -48.31 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -5.52 Total: -106.57 kcal Atomic # 8 Polarization: -108.36 SS G_CDS: -4.14 Total: -112.49 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.82 Total: 42.96 kcal Atomic # 16 Polarization: 132.41 SS G_CDS: -0.24 Total: 132.17 kcal Total: -67.87 -3.70 -71.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396599989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.739 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds