Wall clock time and date at job start Mon Mar 30 2020 04:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.33285 * 2 1 4 4 C 1.54904 * 110.36984 * 122.25275 * 2 1 3 5 5 C 1.55142 * 101.65225 * 155.90237 * 4 2 1 6 6 H 1.08997 * 110.71034 * 82.90103 * 5 4 2 7 7 C 1.53004 * 110.70533 * 205.96185 * 5 4 2 8 8 N 1.46499 * 109.47094 * 182.59385 * 7 5 4 9 9 S 1.65597 * 119.99926 * 165.27799 * 8 7 5 10 10 O 1.42096 * 106.40195 * 178.26439 * 9 8 7 11 11 O 1.42108 * 106.40105 * 311.18495 * 9 8 7 12 12 C 1.76199 * 107.22117 * 64.72196 * 9 8 7 13 13 H 1.08002 * 120.00179 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00184 * 180.02562 * 12 9 8 15 15 N 1.31521 * 120.00165 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 120.00205 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.46987 * 89.99899 * 16 14 12 18 18 H 1.48500 * 109.47244 * 210.00008 * 16 14 12 19 19 H 1.48498 * 109.46529 * 330.00134 * 16 14 12 20 20 C 1.54317 * 103.17443 * 324.43129 * 5 4 2 21 21 N 1.47738 * 107.08450 * 22.06917 * 20 5 4 22 22 C 1.46904 * 110.85508 * 123.43086 * 21 20 5 23 23 H 1.08997 * 109.47445 * 297.75403 * 1 2 3 24 24 H 1.09007 * 109.46944 * 57.75068 * 1 2 3 25 25 H 1.09005 * 109.47084 * 177.74434 * 1 2 3 26 26 H 1.09001 * 110.99620 * 37.80652 * 4 2 1 27 27 H 1.09003 * 110.98988 * 273.99283 * 4 2 1 28 28 H 1.09007 * 109.47007 * 62.59327 * 7 5 4 29 29 H 1.08995 * 109.47080 * 302.59571 * 7 5 4 30 30 H 0.97001 * 119.99790 * 344.99588 * 8 7 5 31 31 H 0.96998 * 119.99908 * 180.02562 * 15 14 12 32 32 H 1.08995 * 109.89139 * 141.60750 * 20 5 4 33 33 H 1.09003 * 109.88697 * 262.79163 * 20 5 4 34 34 H 1.09006 * 109.46619 * 299.20931 * 22 21 20 35 35 H 1.08990 * 109.47508 * 59.21053 * 22 21 20 36 36 H 1.08995 * 109.46750 * 179.21442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0692 -0.7750 1.2281 5 6 3.4786 -1.1987 0.7372 6 1 4.1948 -0.3890 0.8762 7 6 3.9464 -2.4625 1.4617 8 7 5.3024 -2.8028 1.0237 9 16 6.2027 -3.8916 1.8875 10 8 7.4342 -4.0344 1.1932 11 8 6.1196 -3.4910 3.2484 12 6 5.3855 -5.4487 1.7766 13 1 4.4684 -5.5384 1.2132 14 6 5.9167 -6.5527 2.4090 15 7 5.3070 -7.7151 2.3258 16 14 7.5025 -6.3976 3.3841 17 1 7.1854 -6.0521 4.7931 18 1 8.2365 -7.6879 3.3439 19 1 8.3461 -5.3295 2.7903 20 6 3.2581 -1.4803 -0.7640 21 7 2.0447 -0.7421 -1.1705 22 6 2.3358 0.1692 -2.2853 23 1 -0.3634 0.4785 0.9094 24 1 -0.3633 0.5484 -0.8692 25 1 -0.3633 -1.0269 -0.0404 26 1 1.4514 -1.6473 1.4415 27 1 2.1387 -0.1249 2.1003 28 1 3.2717 -3.2862 1.2280 29 1 3.9455 -2.2861 2.5373 30 1 5.6713 -2.3934 0.2255 31 1 5.6806 -8.4916 2.7710 32 1 4.1175 -1.1318 -1.3368 33 1 3.1123 -2.5488 -0.9233 34 1 3.0866 0.8956 -1.9741 35 1 2.7129 -0.4026 -3.1331 36 1 1.4239 0.6909 -2.5756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396599993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:29 Heat of formation + Delta-G solvation = -84.580695 kcal Electronic energy + Delta-G solvation = -18442.889308 eV Core-core repulsion = 15474.470410 eV Total energy + Delta-G solvation = -2968.418898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.43334 -35.66357 -35.06738 -34.40779 -33.01060 -32.06273 -31.00679 -26.43957 -26.29214 -25.79565 -23.62916 -20.69721 -19.81916 -19.01410 -17.43825 -16.67317 -16.52166 -15.71493 -14.97794 -14.80555 -14.28209 -13.95473 -13.87009 -13.51882 -13.27718 -12.89153 -12.75462 -12.62920 -12.33420 -12.02788 -11.79081 -11.38544 -11.33636 -11.14815 -10.93617 -10.79627 -10.68489 -10.59012 -10.49618 -10.46463 -9.79807 -9.21563 -9.19317 -8.55280 -8.40679 -6.78460 -5.32102 2.10505 3.08757 3.19291 3.28475 3.87106 3.96988 4.28860 4.54579 4.61431 4.65527 4.85922 5.11778 5.22388 5.28574 5.30708 5.32533 5.36687 5.53430 5.61015 5.71273 5.74039 5.78882 5.85174 6.00018 6.06652 6.08204 6.19867 6.25452 6.38211 6.61546 6.90264 7.00680 7.49536 7.74547 8.23050 8.72758 10.33893 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.005081 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.031298 B = 5509.396699 C = 5632.394692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.065 3.935 3 H 0.052 0.948 4 C -0.120 4.120 5 C -0.117 4.117 6 H 0.080 0.920 7 C 0.137 3.863 8 N -1.126 6.126 9 S 2.676 3.324 10 O -1.010 7.010 11 O -1.013 7.013 12 C -1.015 5.015 13 H 0.122 0.878 14 C 0.153 3.847 15 N -0.824 5.824 16 Si 0.803 3.197 17 H -0.247 1.247 18 H -0.255 1.255 19 H -0.221 1.221 20 C 0.043 3.957 21 N -0.530 5.530 22 C 0.020 3.980 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.404 0.596 31 H 0.280 0.720 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.428 14.200 -5.110 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 H 0.070 0.930 4 C -0.158 4.158 5 C -0.138 4.138 6 H 0.099 0.901 7 C 0.010 3.990 8 N -0.881 5.881 9 S 2.778 3.222 10 O -1.000 7.000 11 O -1.003 7.003 12 C -1.149 5.149 13 H 0.139 0.861 14 C -0.067 4.067 15 N -0.453 5.453 16 Si 0.623 3.377 17 H -0.170 1.170 18 H -0.180 1.180 19 H -0.143 1.143 20 C -0.085 4.085 21 N -0.255 5.255 22 C -0.128 4.128 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.235 0.765 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.113 13.799 -4.634 16.201 hybrid contribution 0.889 0.160 0.015 0.904 sum -6.224 13.959 -4.619 15.967 Atomic orbital electron populations 1.21690 0.93951 1.02589 1.00958 1.22592 0.96068 0.95782 0.89835 0.92962 1.22803 0.95302 1.00701 0.97030 1.22622 0.97317 0.98361 0.95450 0.90148 1.21103 0.83254 0.95669 0.99017 1.55471 1.26721 1.62831 1.43099 1.01291 0.72983 0.75241 0.72697 1.93471 1.44330 1.87485 1.74762 1.93401 1.87316 1.84036 1.35516 1.30460 1.25059 1.13551 1.45871 0.86051 1.24432 0.96099 0.94132 0.91993 1.69995 1.37958 1.00152 1.37182 0.87850 0.84064 0.82450 0.83375 1.17034 1.17952 1.14265 1.23042 0.90818 1.00386 0.94241 1.63659 1.28959 1.25909 1.06932 1.22528 1.00172 0.95473 0.94666 0.92442 0.93050 0.91689 0.89767 0.90508 0.91380 0.90408 0.76500 0.90937 0.92597 0.89397 0.95701 0.91375 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.59 37.16 0.36 -0.86 16 2 C 0.07 0.68 3.05 -66.19 -0.20 0.47 16 3 H 0.05 0.52 7.78 -51.93 -0.40 0.11 16 4 C -0.12 -1.31 5.94 -24.59 -0.15 -1.46 16 5 C -0.12 -1.48 3.04 -88.79 -0.27 -1.75 16 6 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 7 C 0.14 2.21 5.54 -4.04 -0.02 2.19 16 8 N -1.13 -20.97 5.92 -10.61 -0.06 -21.03 16 9 S 2.68 66.29 4.23 -107.50 -0.46 65.83 16 10 O -1.01 -27.07 16.02 -57.17 -0.92 -27.99 16 11 O -1.01 -26.90 16.31 -57.17 -0.93 -27.84 16 12 C -1.02 -28.22 10.25 30.60 0.31 -27.91 16 13 H 0.12 3.39 8.06 -52.49 -0.42 2.97 16 14 C 0.15 4.40 5.47 -17.82 -0.10 4.30 16 15 N -0.82 -23.87 13.96 55.43 0.77 -23.09 16 16 Si 0.80 20.69 26.54 -169.99 -4.51 16.18 16 17 H -0.25 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.22 -5.79 5.61 56.52 0.32 -5.47 16 20 C 0.04 0.53 6.13 -2.67 -0.02 0.51 16 21 N -0.53 -6.13 5.11 -231.35 -1.18 -7.31 16 22 C 0.02 0.20 9.13 60.07 0.55 0.74 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.95 7.96 -51.93 -0.41 0.53 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.11 8.01 -51.93 -0.42 0.70 16 29 H 0.08 1.30 7.76 -51.93 -0.40 0.89 16 30 H 0.40 6.46 8.38 -34.47 -0.29 6.17 16 31 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.06 0.65 7.59 -51.93 -0.39 0.25 16 33 H 0.09 1.21 7.73 -51.93 -0.40 0.81 16 34 H 0.02 0.23 8.09 -51.93 -0.42 -0.19 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 302.71 15.07 4.56 4.56 Total: -1.00 -32.61 302.71 -8.00 -40.61 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.74 Total: 3.83 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 0.46 Total: -23.75 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.47 Total: -51.44 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -1.85 Total: -55.82 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.51 Total: 16.18 kcal Atomic # 16 Polarization: 66.29 SS G_CDS: -0.46 Total: 65.83 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.61 -8.00 -40.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396599993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.968 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds