Wall clock time and date at job start Mon Mar 30 2020 04:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.33285 * 2 1 4 4 C 1.54904 * 110.36984 * 122.25275 * 2 1 3 5 5 C 1.55142 * 101.65225 * 155.90237 * 4 2 1 6 6 H 1.08997 * 110.71034 * 82.90103 * 5 4 2 7 7 C 1.53004 * 110.70533 * 205.96185 * 5 4 2 8 8 N 1.46499 * 109.47094 * 182.59385 * 7 5 4 9 9 S 1.65597 * 119.99926 * 165.27799 * 8 7 5 10 10 O 1.42096 * 106.40195 * 178.26439 * 9 8 7 11 11 O 1.42108 * 106.40105 * 311.18495 * 9 8 7 12 12 C 1.76199 * 107.22117 * 64.72196 * 9 8 7 13 13 H 1.08002 * 120.00179 * 0.02562 * 12 9 8 14 14 C 1.37873 * 120.00184 * 180.02562 * 12 9 8 15 15 N 1.31521 * 120.00165 * 180.02562 * 14 12 9 16 16 Si 1.86802 * 120.00205 * 0.02562 * 14 12 9 17 17 H 1.48497 * 109.46987 * 89.99899 * 16 14 12 18 18 H 1.48500 * 109.47244 * 210.00008 * 16 14 12 19 19 H 1.48498 * 109.46529 * 330.00134 * 16 14 12 20 20 C 1.54317 * 103.17443 * 324.43129 * 5 4 2 21 21 N 1.47738 * 107.08450 * 22.06917 * 20 5 4 22 22 C 1.46904 * 110.85508 * 123.43086 * 21 20 5 23 23 H 1.08997 * 109.47445 * 297.75403 * 1 2 3 24 24 H 1.09007 * 109.46944 * 57.75068 * 1 2 3 25 25 H 1.09005 * 109.47084 * 177.74434 * 1 2 3 26 26 H 1.09001 * 110.99620 * 37.80652 * 4 2 1 27 27 H 1.09003 * 110.98988 * 273.99283 * 4 2 1 28 28 H 1.09007 * 109.47007 * 62.59327 * 7 5 4 29 29 H 1.08995 * 109.47080 * 302.59571 * 7 5 4 30 30 H 0.97001 * 119.99790 * 344.99588 * 8 7 5 31 31 H 0.96998 * 119.99908 * 180.02562 * 15 14 12 32 32 H 1.08995 * 109.89139 * 141.60750 * 20 5 4 33 33 H 1.09003 * 109.88697 * 262.79163 * 20 5 4 34 34 H 1.09006 * 109.46619 * 299.20931 * 22 21 20 35 35 H 1.08990 * 109.47508 * 59.21053 * 22 21 20 36 36 H 1.08995 * 109.46750 * 179.21442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0692 -0.7750 1.2281 5 6 3.4786 -1.1987 0.7372 6 1 4.1948 -0.3890 0.8762 7 6 3.9464 -2.4625 1.4617 8 7 5.3024 -2.8028 1.0237 9 16 6.2027 -3.8916 1.8875 10 8 7.4342 -4.0344 1.1932 11 8 6.1196 -3.4910 3.2484 12 6 5.3855 -5.4487 1.7766 13 1 4.4684 -5.5384 1.2132 14 6 5.9167 -6.5527 2.4090 15 7 5.3070 -7.7151 2.3258 16 14 7.5025 -6.3976 3.3841 17 1 7.1854 -6.0521 4.7931 18 1 8.2365 -7.6879 3.3439 19 1 8.3461 -5.3295 2.7903 20 6 3.2581 -1.4803 -0.7640 21 7 2.0447 -0.7421 -1.1705 22 6 2.3358 0.1692 -2.2853 23 1 -0.3634 0.4785 0.9094 24 1 -0.3633 0.5484 -0.8692 25 1 -0.3633 -1.0269 -0.0404 26 1 1.4514 -1.6473 1.4415 27 1 2.1387 -0.1249 2.1003 28 1 3.2717 -3.2862 1.2280 29 1 3.9455 -2.2861 2.5373 30 1 5.6713 -2.3934 0.2255 31 1 5.6806 -8.4916 2.7710 32 1 4.1175 -1.1318 -1.3368 33 1 3.1123 -2.5488 -0.9233 34 1 3.0866 0.8956 -1.9741 35 1 2.7129 -0.4026 -3.1331 36 1 1.4239 0.6909 -2.5756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396599993.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:28 Heat of formation + Delta-G solvation = -111.263368 kcal Electronic energy + Delta-G solvation = -18444.046356 eV Core-core repulsion = 15474.470410 eV Total energy + Delta-G solvation = -2969.575945 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35788 -37.69387 -36.49540 -36.42759 -35.17621 -32.95584 -32.06695 -28.56264 -27.29020 -26.75820 -24.66234 -21.72854 -20.93840 -20.76757 -19.41975 -18.57349 -17.67827 -17.22158 -16.75997 -15.93442 -15.68181 -15.38140 -15.18708 -14.98321 -14.80451 -14.49742 -13.88495 -13.72374 -13.41822 -13.37604 -13.13945 -12.96442 -12.84845 -12.70081 -12.56604 -12.18641 -12.07848 -11.83486 -11.82071 -11.61219 -11.44062 -11.32461 -11.20594 -10.23659 -9.25806 -8.95518 -7.51504 0.16079 1.05978 1.15383 1.22529 1.89994 2.42804 2.57892 3.03479 3.30862 3.62095 3.63918 3.87145 4.21712 4.23527 4.33526 4.40851 4.48883 4.52297 4.62144 4.69524 4.77215 4.81967 4.94935 5.01238 5.04155 5.06853 5.11941 5.20623 5.36867 5.40813 5.47204 6.01987 6.04065 6.20492 6.30123 6.54998 8.22161 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.037573 B = 0.005081 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.031298 B = 5509.396699 C = 5632.394692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.066 3.934 3 H 0.064 0.936 4 C -0.119 4.119 5 C -0.109 4.109 6 H 0.092 0.908 7 C 0.129 3.871 8 N -1.109 6.109 9 S 2.700 3.300 10 O -1.030 7.030 11 O -1.030 7.030 12 C -1.037 5.037 13 H 0.106 0.894 14 C 0.107 3.893 15 N -0.854 5.854 16 Si 0.826 3.174 17 H -0.238 1.238 18 H -0.221 1.221 19 H -0.229 1.229 20 C 0.042 3.958 21 N -0.545 5.545 22 C 0.020 3.980 23 H 0.071 0.929 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.419 0.581 31 H 0.291 0.709 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.475 15.838 -5.154 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.042 4.042 3 H 0.082 0.918 4 C -0.158 4.158 5 C -0.130 4.130 6 H 0.111 0.889 7 C 0.003 3.997 8 N -0.870 5.870 9 S 2.799 3.201 10 O -1.021 7.021 11 O -1.019 7.019 12 C -1.170 5.170 13 H 0.124 0.876 14 C -0.109 4.109 15 N -0.485 5.485 16 Si 0.643 3.357 17 H -0.162 1.162 18 H -0.143 1.143 19 H -0.152 1.152 20 C -0.086 4.086 21 N -0.269 5.269 22 C -0.129 4.129 23 H 0.090 0.910 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.253 0.747 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.166 15.409 -4.687 17.628 hybrid contribution 0.802 -0.302 -0.036 0.858 sum -6.363 15.107 -4.723 17.059 Atomic orbital electron populations 1.21668 0.93053 1.02077 1.02044 1.22655 0.96763 0.95943 0.88826 0.91845 1.22846 0.93889 1.00918 0.98110 1.22559 0.98541 0.96618 0.95277 0.88944 1.21323 0.81584 0.97417 0.99364 1.54978 1.27435 1.61283 1.43291 1.00417 0.72526 0.74585 0.72522 1.93435 1.45600 1.87912 1.75109 1.93374 1.87609 1.84021 1.36935 1.30985 1.24936 1.15657 1.45419 0.87568 1.25180 0.98546 0.94254 0.92932 1.70020 1.39350 1.00899 1.38211 0.87472 0.81624 0.83957 0.82623 1.16165 1.14300 1.15165 1.22974 0.91747 0.99636 0.94208 1.63650 1.28459 1.26939 1.07884 1.22571 1.00982 0.95313 0.93996 0.90981 0.92408 0.92945 0.90468 0.88859 0.92050 0.90800 0.74674 0.89869 0.91712 0.91346 0.95067 0.91366 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.59 71.98 0.69 -1.40 16 2 C 0.07 1.21 3.05 45.39 0.14 1.35 16 3 H 0.06 1.04 7.78 -2.39 -0.02 1.03 16 4 C -0.12 -2.38 5.94 31.98 0.19 -2.19 16 5 C -0.11 -2.58 3.04 -9.61 -0.03 -2.61 16 6 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 7 C 0.13 4.10 5.54 86.38 0.48 4.58 16 8 N -1.11 -40.43 5.92 -187.48 -1.11 -41.54 16 9 S 2.70 132.60 4.23 -56.49 -0.24 132.36 16 10 O -1.03 -54.53 16.02 -128.00 -2.05 -56.58 16 11 O -1.03 -53.97 16.31 -128.00 -2.09 -56.05 16 12 C -1.04 -58.35 10.25 67.73 0.69 -57.66 16 13 H 0.11 6.11 8.06 -2.91 -0.02 6.08 16 14 C 0.11 6.20 5.47 84.65 0.46 6.67 16 15 N -0.85 -49.77 13.96 21.45 0.30 -49.47 16 16 Si 0.83 41.25 26.54 68.60 1.82 43.07 16 17 H -0.24 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.22 -9.73 7.11 99.48 0.71 -9.03 16 19 H -0.23 -11.74 5.61 99.48 0.56 -11.18 16 20 C 0.04 0.99 6.13 86.59 0.53 1.52 16 21 N -0.54 -11.63 5.11 -885.87 -4.53 -16.16 16 22 C 0.02 0.34 9.13 127.69 1.17 1.50 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.08 1.65 7.96 -2.39 -0.02 1.64 16 27 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 2.02 8.01 -2.38 -0.02 2.01 16 29 H 0.07 2.41 7.76 -2.39 -0.02 2.39 16 30 H 0.42 12.83 8.38 -96.74 -0.81 12.02 16 31 H 0.29 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.06 1.38 7.59 -2.39 -0.02 1.37 16 33 H 0.07 1.87 7.73 -2.39 -0.02 1.85 16 34 H 0.03 0.49 8.09 -2.38 -0.02 0.47 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -68.37 302.71 -3.48 -71.85 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.10 Total: 20.76 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 4.32 Total: -48.24 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -5.34 Total: -107.17 kcal Atomic # 8 Polarization: -108.49 SS G_CDS: -4.14 Total: -112.63 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.82 Total: 43.07 kcal Atomic # 16 Polarization: 132.60 SS G_CDS: -0.24 Total: 132.36 kcal Total: -68.37 -3.48 -71.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396599993.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.417 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds