Wall clock time and date at job start Mon Mar 30 2020 04:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 110.42186 * 2 1 4 4 C 1.54912 * 110.37520 * 237.69030 * 2 1 3 5 5 C 1.55134 * 101.65649 * 204.10062 * 4 2 1 6 6 H 1.09011 * 110.85465 * 277.20339 * 5 4 2 7 7 C 1.52991 * 110.70868 * 154.03513 * 5 4 2 8 8 N 1.46508 * 109.47282 * 179.97438 * 7 5 4 9 9 S 1.65595 * 119.99876 * 164.99994 * 8 7 5 10 10 O 1.42105 * 106.40149 * 178.54167 * 9 8 7 11 11 O 1.42098 * 106.40317 * 311.46040 * 9 8 7 12 12 C 1.76204 * 107.21987 * 65.00402 * 9 8 7 13 13 H 1.07995 * 119.99666 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00094 * 180.02562 * 12 9 8 15 15 N 1.31520 * 120.00086 * 359.97438 * 14 12 9 16 16 Si 1.86801 * 120.00176 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.46880 * 89.99848 * 16 14 12 18 18 H 1.48497 * 109.47235 * 209.99588 * 16 14 12 19 19 H 1.48500 * 109.46835 * 329.99958 * 16 14 12 20 20 C 1.54323 * 103.01873 * 35.64854 * 5 4 2 21 21 N 1.47439 * 107.23126 * 337.72129 * 20 5 4 22 22 C 1.46905 * 110.99809 * 236.73757 * 21 20 5 23 23 H 1.09000 * 109.47193 * 299.13522 * 1 2 3 24 24 H 1.09003 * 109.47506 * 59.14029 * 1 2 3 25 25 H 1.09008 * 109.47261 * 179.13588 * 1 2 3 26 26 H 1.09002 * 110.98933 * 86.00802 * 4 2 1 27 27 H 1.08992 * 110.98797 * 322.19293 * 4 2 1 28 28 H 1.09006 * 109.47413 * 59.94785 * 7 5 4 29 29 H 1.08993 * 109.47590 * 299.94636 * 7 5 4 30 30 H 0.96997 * 120.00091 * 344.99966 * 8 7 5 31 31 H 0.97000 * 120.00093 * 180.02562 * 15 14 12 32 32 H 1.08998 * 109.88090 * 97.12614 * 20 5 4 33 33 H 1.09001 * 109.88784 * 218.14884 * 20 5 4 34 34 H 1.09003 * 109.47138 * 60.12877 * 22 21 20 35 35 H 1.08996 * 109.47590 * 180.12895 * 22 21 20 36 36 H 1.08999 * 109.46886 * 300.13126 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7762 -1.2274 5 6 3.4785 -1.1995 -0.7360 6 1 4.1965 -0.3907 -0.8730 7 6 3.9464 -2.4639 -1.4591 8 7 5.2778 -2.8386 -0.9758 9 16 5.8795 -4.3482 -1.2939 10 8 7.1834 -4.3874 -0.7303 11 8 4.8549 -5.2698 -0.9472 12 6 6.0881 -4.4695 -3.0393 13 1 5.8302 -3.6341 -3.6733 14 6 6.5797 -5.6312 -3.5958 15 7 6.8933 -6.6488 -2.8238 16 14 6.8002 -5.7601 -5.4463 17 1 8.1631 -5.3003 -5.8155 18 1 6.6230 -7.1726 -5.8687 19 1 5.7899 -4.9097 -6.1255 20 6 3.2535 -1.4807 0.7646 21 7 2.0447 -0.7409 1.1712 22 6 2.3357 0.1716 2.2851 23 1 -0.3633 0.5003 0.8976 24 1 -0.3634 0.5271 -0.8822 25 1 -0.3634 -1.0276 -0.0155 26 1 2.1388 -0.1270 -2.1002 27 1 1.4515 -1.6486 -1.4398 28 1 3.9888 -2.2745 -2.5317 29 1 3.2467 -3.2758 -1.2610 30 1 5.8068 -2.2024 -0.4696 31 1 7.2395 -7.4660 -3.2152 32 1 3.1056 -2.5489 0.9235 33 1 4.1131 -1.1360 1.3395 34 1 3.0957 0.8898 1.9773 35 1 1.4266 0.7030 2.5665 36 1 2.7008 -0.4008 3.1378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396599994.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:32 Heat of formation + Delta-G solvation = -127.641531 kcal Electronic energy + Delta-G solvation = -18411.030036 eV Core-core repulsion = 15440.743880 eV Total energy + Delta-G solvation = -2970.286156 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36728 -37.40434 -36.36316 -36.12016 -35.15699 -32.94113 -32.02231 -28.25211 -27.28771 -26.72355 -24.63531 -21.72606 -20.90572 -20.75874 -19.30865 -18.16287 -17.45724 -17.12222 -16.64009 -16.06652 -15.82485 -15.29917 -15.12468 -14.90886 -14.52796 -13.99527 -13.66905 -13.43467 -13.36653 -13.26428 -13.00255 -12.91113 -12.73291 -12.49888 -12.40393 -12.28994 -12.13142 -11.96361 -11.87165 -11.60781 -11.43673 -11.23924 -10.99047 -10.15712 -9.25937 -8.74279 -7.47421 0.37869 1.35507 1.35906 1.52080 2.22031 2.59355 2.99414 3.03813 3.60884 3.65250 3.73655 3.92029 4.26442 4.35130 4.40255 4.46708 4.50260 4.54875 4.62881 4.71280 4.80465 4.85507 4.94186 5.00613 5.02573 5.11009 5.12212 5.21189 5.32758 5.40472 5.47207 5.90934 6.03956 6.20766 6.41041 6.79449 8.22190 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.034533 B = 0.005102 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.618813 B = 5487.050562 C = 5971.553738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.065 3.935 3 H 0.066 0.934 4 C -0.117 4.117 5 C -0.108 4.108 6 H 0.097 0.903 7 C 0.132 3.868 8 N -1.120 6.120 9 S 2.721 3.279 10 O -1.047 7.047 11 O -1.044 7.044 12 C -1.040 5.040 13 H 0.122 0.878 14 C 0.068 3.932 15 N -0.895 5.895 16 Si 0.992 3.008 17 H -0.256 1.256 18 H -0.264 1.264 19 H -0.246 1.246 20 C 0.043 3.957 21 N -0.547 5.547 22 C 0.020 3.980 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.414 0.586 31 H 0.298 0.702 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 15.831 1.483 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.042 4.042 3 H 0.084 0.916 4 C -0.156 4.156 5 C -0.128 4.128 6 H 0.115 0.885 7 C 0.005 3.995 8 N -0.880 5.880 9 S 2.822 3.178 10 O -1.037 7.037 11 O -1.034 7.034 12 C -1.174 5.174 13 H 0.140 0.860 14 C -0.145 4.145 15 N -0.527 5.527 16 Si 0.810 3.190 17 H -0.180 1.180 18 H -0.188 1.188 19 H -0.169 1.169 20 C -0.085 4.085 21 N -0.272 5.272 22 C -0.128 4.128 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.248 0.752 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.364 14.518 2.312 17.987 hybrid contribution 1.219 0.438 -0.979 1.624 sum -9.145 14.956 1.333 17.580 Atomic orbital electron populations 1.21668 0.93023 1.02022 1.02102 1.22679 0.96778 0.96017 0.88756 0.91632 1.22842 0.93737 1.00841 0.98157 1.22568 0.98730 0.96757 0.94790 0.88463 1.21268 0.82334 0.97209 0.98672 1.55316 1.26899 1.34230 1.71543 0.99823 0.71083 0.70602 0.76323 1.93308 1.42321 1.86401 1.81690 1.93304 1.60906 1.62844 1.86338 1.30916 1.58037 1.08848 1.19574 0.85984 1.26048 0.88616 0.92556 1.07247 1.70001 1.36704 1.05572 1.40401 0.85105 0.80298 0.79117 0.74489 1.17973 1.18835 1.16862 1.22856 0.91646 0.99056 0.94908 1.63504 1.28587 1.26968 1.08151 1.22562 1.01031 0.95259 0.93925 0.92457 0.90752 0.93095 0.88355 0.90695 0.90824 0.92258 0.75220 0.89151 0.92447 0.92166 0.94953 0.90325 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.59 71.98 0.69 -1.43 16 2 C 0.07 1.23 3.05 45.39 0.14 1.37 16 3 H 0.07 1.08 7.78 -2.39 -0.02 1.06 16 4 C -0.12 -2.34 5.94 31.98 0.19 -2.15 16 5 C -0.11 -2.62 3.01 -9.62 -0.03 -2.65 16 6 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 7 C 0.13 4.27 5.54 86.37 0.48 4.75 16 8 N -1.12 -43.30 5.80 -187.49 -1.09 -44.38 16 9 S 2.72 146.45 5.02 -56.49 -0.28 146.17 16 10 O -1.05 -63.06 18.02 -128.00 -2.31 -65.36 16 11 O -1.04 -62.94 17.49 -128.00 -2.24 -65.18 16 12 C -1.04 -56.92 9.72 67.73 0.66 -56.26 16 13 H 0.12 5.93 7.81 -2.91 -0.02 5.91 16 14 C 0.07 3.78 5.46 84.65 0.46 4.24 16 15 N -0.90 -53.81 13.19 21.45 0.28 -53.52 16 16 Si 0.99 41.06 29.54 68.60 2.03 43.09 16 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 18 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 19 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 20 C 0.04 1.14 6.31 86.65 0.55 1.69 16 21 N -0.55 -12.57 5.10 -886.66 -4.52 -17.09 16 22 C 0.02 0.38 9.12 127.69 1.16 1.54 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.63 7.96 -2.39 -0.02 1.61 16 28 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.06 2.15 7.67 -2.39 -0.02 2.13 16 30 H 0.41 13.68 8.65 -96.75 -0.84 12.84 16 31 H 0.30 16.09 8.31 -92.71 -0.77 15.32 16 32 H 0.06 1.84 7.77 -2.39 -0.02 1.82 16 33 H 0.06 1.48 7.59 -2.39 -0.02 1.46 16 34 H 0.03 0.54 8.10 -2.39 -0.02 0.52 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -75.67 310.01 -3.60 -79.27 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.22 Total: 25.91 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 4.30 Total: -48.90 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -5.33 Total: -115.00 kcal Atomic # 8 Polarization: -126.00 SS G_CDS: -4.54 Total: -130.54 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Atomic # 16 Polarization: 146.45 SS G_CDS: -0.28 Total: 146.17 kcal Total: -75.67 -3.60 -79.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396599994.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.369 kcal (2) G-P(sol) polarization free energy of solvation -75.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds