Wall clock time and date at job start Mon Mar 30 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46989 * 2 1 4 4 N 1.46504 * 109.47168 * 119.99931 * 2 1 3 5 5 S 1.65593 * 119.99749 * 145.00081 * 4 2 1 6 6 O 1.42103 * 106.40417 * 311.45980 * 5 4 2 7 7 O 1.42101 * 106.40025 * 178.54012 * 5 4 2 8 8 N 1.65607 * 107.21952 * 65.00025 * 5 4 2 9 9 C 1.47016 * 125.64964 * 269.95644 * 8 5 4 10 10 C 1.54318 * 107.27321 * 181.09193 * 9 8 5 11 11 C 1.55158 * 102.93908 * 22.19512 * 10 9 8 12 12 H 1.09005 * 111.03828 * 82.59038 * 11 10 9 13 13 C 1.50706 * 111.00151 * 206.42024 * 11 10 9 14 14 H 1.08005 * 119.99758 * 112.19813 * 13 11 10 15 15 C 1.37871 * 120.00102 * 292.19698 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 C 1.47422 * 125.64328 * 89.99859 * 8 5 4 22 22 H 1.09001 * 109.47221 * 299.99392 * 1 2 3 23 23 H 1.08999 * 109.47639 * 59.99899 * 1 2 3 24 24 H 1.09009 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46867 * 239.99736 * 2 1 3 26 26 H 1.09006 * 109.47282 * 59.99962 * 3 2 1 27 27 H 1.08995 * 109.47630 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47067 * 299.99945 * 3 2 1 29 29 H 0.96994 * 120.00073 * 325.00448 * 4 2 1 30 30 H 1.09001 * 109.88167 * 300.51199 * 9 8 5 31 31 H 1.08999 * 109.87786 * 61.67615 * 9 8 5 32 32 H 1.09000 * 110.72506 * 263.83198 * 10 9 8 33 33 H 1.09001 * 110.72284 * 140.55389 * 10 9 8 34 34 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 35 35 H 1.08999 * 110.37553 * 37.00285 * 21 8 5 36 36 H 1.09000 * 110.45822 * 274.71961 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 3.4019 -1.5974 1.1218 6 8 3.2727 -2.4337 -0.0199 7 8 3.6231 -2.1001 2.4324 8 7 4.6519 -0.5593 0.8019 9 6 5.1317 -0.1822 -0.5356 10 6 6.3229 0.7793 -0.3409 11 6 6.8071 0.4462 1.0951 12 1 7.4597 -0.4269 1.0954 13 6 7.4954 1.6316 1.7215 14 1 7.0402 2.1401 2.5586 15 6 8.7063 2.0667 1.2261 16 7 9.2604 1.4478 0.2066 17 14 9.5590 3.5364 2.0022 18 1 10.8361 3.7998 1.2916 19 1 8.6803 4.7292 1.9006 20 1 9.8391 3.2482 3.4318 21 6 5.4683 0.1391 1.8114 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0278 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.5313 -0.6167 2.0317 30 1 5.4571 -1.0707 -1.0768 31 1 4.3365 0.3196 -1.0868 32 1 5.9958 1.8170 -0.4066 33 1 7.1072 0.5742 -1.0695 34 1 8.8173 0.6848 -0.1966 35 1 5.6387 -0.5054 2.6738 36 1 4.9824 1.0646 2.1204 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397651388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:54 Heat of formation + Delta-G solvation = -93.048944 kcal Electronic energy + Delta-G solvation = -19020.305657 eV Core-core repulsion = 16051.519548 eV Total energy + Delta-G solvation = -2968.786109 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -37.82728 -37.19864 -36.65324 -35.62492 -33.19875 -30.57337 -29.56809 -28.50806 -27.29257 -24.27152 -21.78504 -21.57228 -20.05930 -19.35290 -17.80142 -17.36972 -16.54178 -16.11330 -15.13332 -14.86496 -14.45856 -13.79754 -13.56602 -13.40205 -12.90455 -12.73386 -12.52514 -12.36981 -12.35819 -11.92263 -11.85832 -11.63415 -11.58670 -11.49913 -11.14020 -11.02354 -10.83573 -10.65527 -10.14402 -9.94621 -9.69629 -9.58962 -8.60753 -8.52315 -8.40947 -6.41086 -4.14049 0.81086 3.10808 3.40968 3.42451 3.61021 3.77684 4.46720 4.53938 4.66276 4.89931 5.01458 5.25109 5.29439 5.40759 5.47665 5.63223 5.67729 5.73514 5.82342 5.88516 6.03110 6.12283 6.17163 6.26975 6.44241 6.62928 6.75519 6.82184 6.89649 7.08798 7.12710 7.50623 8.12077 8.35730 8.79836 9.58048 10.97672 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030698 B = 0.005840 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.887134 B = 4793.135242 C = 5073.690657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.142 3.858 3 C -0.178 4.178 4 N -1.126 6.126 5 S 2.800 3.200 6 O -0.984 6.984 7 O -0.982 6.982 8 N -1.016 6.016 9 C 0.119 3.881 10 C -0.121 4.121 11 C 0.033 3.967 12 H 0.033 0.967 13 C -0.594 4.594 14 H 0.052 0.948 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 1.068 2.932 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.288 1.288 21 C 0.129 3.871 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.412 0.588 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.272 0.728 35 H 0.065 0.935 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 -0.393 -1.221 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 C -0.237 4.237 4 N -0.886 5.886 5 S 2.809 3.191 6 O -0.968 6.968 7 O -0.966 6.966 8 N -0.858 5.858 9 C -0.006 4.006 10 C -0.161 4.161 11 C 0.013 3.987 12 H 0.051 0.949 13 C -0.633 4.633 14 H 0.071 0.929 15 C -0.182 4.182 16 N -0.545 5.545 17 Si 0.897 3.103 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.214 1.214 21 C 0.004 3.996 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.245 0.755 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.829 -0.484 -1.376 13.905 hybrid contribution -1.716 -0.459 0.418 1.825 sum -15.545 -0.943 -0.958 15.603 Atomic orbital electron populations 1.22043 0.94195 1.02506 1.02566 1.20754 0.95441 0.93167 0.87110 1.22439 1.03052 0.95789 1.02422 1.56206 1.44353 1.69405 1.18597 1.01270 0.72000 0.72909 0.72911 1.93575 1.86236 1.64133 1.52838 1.93596 1.85085 1.78191 1.39736 1.58813 1.47704 1.64282 1.14988 1.21837 0.97545 0.98802 0.82417 1.22843 0.94705 0.97564 1.00996 1.19977 0.90746 0.97370 0.90637 0.94888 1.21806 1.07669 1.15051 1.18777 0.92933 1.25785 0.94849 1.01942 0.95642 1.70807 1.41136 1.20909 1.21599 0.83547 0.76244 0.74997 0.75560 1.20825 1.21486 1.21435 1.22198 0.92581 0.94672 0.90107 0.92090 0.91297 0.92019 0.89373 0.92030 0.90952 0.91572 0.75463 0.92290 0.93061 0.91570 0.91371 0.91678 0.91673 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.44 37.16 0.35 -0.94 16 2 C 0.14 1.55 3.54 -67.93 -0.24 1.31 16 3 C -0.18 -1.91 9.47 37.15 0.35 -1.56 16 4 N -1.13 -13.92 5.53 -4.89 -0.03 -13.94 16 5 S 2.80 46.56 6.37 -107.50 -0.68 45.88 16 6 O -0.98 -18.42 17.06 -57.17 -0.98 -19.40 16 7 O -0.98 -19.02 17.46 -57.17 -1.00 -20.02 16 8 N -1.02 -18.13 3.41 -111.43 -0.38 -18.51 16 9 C 0.12 2.10 6.50 -3.07 -0.02 2.08 16 10 C -0.12 -2.53 5.82 -24.90 -0.14 -2.68 16 11 C 0.03 0.78 2.49 -89.62 -0.22 0.56 16 12 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 13 C -0.59 -15.62 8.49 -34.44 -0.29 -15.91 16 14 H 0.05 1.36 7.77 -52.48 -0.41 0.96 16 15 C 0.02 0.62 5.37 -17.82 -0.10 0.52 16 16 N -0.91 -25.99 13.51 55.43 0.75 -25.24 16 17 Si 1.07 24.04 29.90 -169.99 -5.08 18.96 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 21 C 0.13 2.60 6.55 -2.53 -0.02 2.58 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.09 1.02 7.50 -51.93 -0.39 0.63 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.93 5.87 -51.93 -0.30 0.62 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.41 4.24 8.84 -34.46 -0.30 3.94 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.76 6.78 -51.93 -0.35 0.41 16 32 H 0.07 1.40 8.03 -51.93 -0.42 0.98 16 33 H 0.07 1.48 6.86 -51.93 -0.36 1.13 16 34 H 0.27 7.65 5.69 -40.82 -0.23 7.42 16 35 H 0.06 1.33 7.78 -51.93 -0.40 0.93 16 36 H 0.06 1.13 8.01 -51.93 -0.42 0.71 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -31.60 302.11 -8.50 -40.11 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.33 Total: 1.66 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.33 Total: -14.04 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.34 Total: -57.69 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.97 Total: -39.42 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -5.08 Total: 18.96 kcal Atomic # 16 Polarization: 46.56 SS G_CDS: -0.68 Total: 45.88 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.60 -8.50 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.942 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds