Wall clock time and date at job start Mon Mar 30 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46989 * 2 1 4 4 N 1.46504 * 109.47168 * 119.99931 * 2 1 3 5 5 S 1.65593 * 119.99749 * 145.00081 * 4 2 1 6 6 O 1.42103 * 106.40417 * 311.45980 * 5 4 2 7 7 O 1.42101 * 106.40025 * 178.54012 * 5 4 2 8 8 N 1.65607 * 107.21952 * 65.00025 * 5 4 2 9 9 C 1.47016 * 125.64964 * 269.95644 * 8 5 4 10 10 C 1.54318 * 107.27321 * 181.09193 * 9 8 5 11 11 C 1.55158 * 102.93908 * 22.19512 * 10 9 8 12 12 H 1.09005 * 111.03828 * 82.59038 * 11 10 9 13 13 C 1.50706 * 111.00151 * 206.42024 * 11 10 9 14 14 H 1.08005 * 119.99758 * 112.19813 * 13 11 10 15 15 C 1.37871 * 120.00102 * 292.19698 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 C 1.47422 * 125.64328 * 89.99859 * 8 5 4 22 22 H 1.09001 * 109.47221 * 299.99392 * 1 2 3 23 23 H 1.08999 * 109.47639 * 59.99899 * 1 2 3 24 24 H 1.09009 * 109.47122 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46867 * 239.99736 * 2 1 3 26 26 H 1.09006 * 109.47282 * 59.99962 * 3 2 1 27 27 H 1.08995 * 109.47630 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47067 * 299.99945 * 3 2 1 29 29 H 0.96994 * 120.00073 * 325.00448 * 4 2 1 30 30 H 1.09001 * 109.88167 * 300.51199 * 9 8 5 31 31 H 1.08999 * 109.87786 * 61.67615 * 9 8 5 32 32 H 1.09000 * 110.72506 * 263.83198 * 10 9 8 33 33 H 1.09001 * 110.72284 * 140.55389 * 10 9 8 34 34 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 35 35 H 1.08999 * 110.37553 * 37.00285 * 21 8 5 36 36 H 1.09000 * 110.45822 * 274.71961 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 3.4019 -1.5974 1.1218 6 8 3.2727 -2.4337 -0.0199 7 8 3.6231 -2.1001 2.4324 8 7 4.6519 -0.5593 0.8019 9 6 5.1317 -0.1822 -0.5356 10 6 6.3229 0.7793 -0.3409 11 6 6.8071 0.4462 1.0951 12 1 7.4597 -0.4269 1.0954 13 6 7.4954 1.6316 1.7215 14 1 7.0402 2.1401 2.5586 15 6 8.7063 2.0667 1.2261 16 7 9.2604 1.4478 0.2066 17 14 9.5590 3.5364 2.0022 18 1 10.8361 3.7998 1.2916 19 1 8.6803 4.7292 1.9006 20 1 9.8391 3.2482 3.4318 21 6 5.4683 0.1391 1.8114 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0278 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.5313 -0.6167 2.0317 30 1 5.4571 -1.0707 -1.0768 31 1 4.3365 0.3196 -1.0868 32 1 5.9958 1.8170 -0.4066 33 1 7.1072 0.5742 -1.0695 34 1 8.8173 0.6848 -0.1966 35 1 5.6387 -0.5054 2.6738 36 1 4.9824 1.0646 2.1204 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397651388.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:54 Heat of formation + Delta-G solvation = -116.303810 kcal Electronic energy + Delta-G solvation = -19021.314064 eV Core-core repulsion = 16051.519548 eV Total energy + Delta-G solvation = -2969.794515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.44912 -38.53389 -37.69522 -37.07400 -35.13529 -31.52456 -31.31207 -30.14856 -28.03245 -26.24777 -23.35911 -22.47525 -21.83847 -20.62308 -19.27281 -18.96372 -18.19390 -17.32961 -16.68357 -16.12948 -15.62869 -15.36653 -14.94275 -14.60438 -14.32823 -14.25344 -14.05355 -13.78105 -13.39676 -13.38814 -13.32124 -13.04155 -12.88809 -12.60028 -12.55323 -12.39221 -12.22341 -11.91428 -11.88209 -11.70093 -11.46077 -10.65226 -10.55415 -10.45108 -9.99362 -8.54977 -6.28144 -0.53680 1.59280 1.65930 1.82071 1.84842 2.47507 2.62392 3.15201 3.25792 3.73073 3.85127 4.13237 4.14348 4.23276 4.23670 4.42994 4.44662 4.60580 4.75898 4.80569 4.88675 4.93490 4.97818 5.12879 5.13397 5.22668 5.34018 5.36262 5.39953 5.43621 5.62153 6.08672 6.12442 6.26289 6.67363 7.51724 8.84663 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030698 B = 0.005840 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.887134 B = 4793.135242 C = 5073.690657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.134 3.866 3 C -0.177 4.177 4 N -1.110 6.110 5 S 2.819 3.181 6 O -1.003 7.003 7 O -1.011 7.011 8 N -1.018 6.018 9 C 0.125 3.875 10 C -0.111 4.111 11 C 0.018 3.982 12 H 0.001 0.999 13 C -0.603 4.603 14 H 0.053 0.947 15 C -0.026 4.026 16 N -0.937 5.937 17 Si 1.113 2.887 18 H -0.289 1.289 19 H -0.269 1.269 20 H -0.275 1.275 21 C 0.141 3.859 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.424 0.576 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.262 0.738 35 H 0.058 0.942 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.332 0.752 -1.126 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.028 3.972 3 C -0.236 4.236 4 N -0.874 5.874 5 S 2.828 3.172 6 O -0.987 6.987 7 O -0.995 6.995 8 N -0.858 5.858 9 C 0.000 4.000 10 C -0.150 4.150 11 C -0.003 4.003 12 H 0.019 0.981 13 C -0.641 4.641 14 H 0.072 0.928 15 C -0.225 4.225 16 N -0.574 5.574 17 Si 0.935 3.065 18 H -0.215 1.215 19 H -0.194 1.194 20 H -0.201 1.201 21 C 0.016 3.984 22 H 0.091 0.909 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.261 0.739 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.930 0.650 -1.272 15.994 hybrid contribution -1.142 -0.847 0.386 1.473 sum -17.072 -0.197 -0.886 17.096 Atomic orbital electron populations 1.22033 0.91814 1.02983 1.04070 1.21017 0.97335 0.92973 0.85917 1.22433 1.01591 0.95784 1.03800 1.55831 1.42548 1.68991 1.20028 1.00569 0.72237 0.72674 0.71755 1.93551 1.86608 1.64996 1.53528 1.93552 1.85782 1.79087 1.41064 1.58758 1.48406 1.64269 1.14395 1.21800 0.97285 0.98280 0.82681 1.22610 0.95522 0.98242 0.98666 1.19967 0.91918 0.95378 0.92989 0.98113 1.22156 1.07919 1.15458 1.18587 0.92847 1.27105 0.95935 1.03951 0.95495 1.70910 1.41782 1.21591 1.23121 0.82968 0.75336 0.72897 0.75253 1.21481 1.19377 1.20099 1.21903 0.91302 0.95253 0.89918 0.90933 0.89483 0.92088 0.89983 0.91370 0.93117 0.89606 0.73933 0.92266 0.89645 0.91792 0.93013 0.92756 0.92378 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.44 71.98 0.68 -1.30 16 2 C 0.13 2.53 3.54 44.99 0.16 2.69 16 3 C -0.18 -3.26 9.47 71.98 0.68 -2.58 16 4 N -1.11 -24.87 5.53 -169.39 -0.94 -25.80 16 5 S 2.82 90.35 6.37 -56.49 -0.36 89.99 16 6 O -1.00 -36.32 17.06 -128.00 -2.18 -38.51 16 7 O -1.01 -38.42 17.46 -128.00 -2.23 -40.66 16 8 N -1.02 -35.48 3.41 -506.46 -1.73 -37.21 16 9 C 0.12 4.27 6.50 86.73 0.56 4.84 16 10 C -0.11 -4.66 5.82 31.78 0.19 -4.47 16 11 C 0.02 0.85 2.49 -10.15 -0.03 0.83 16 12 H 0.00 0.04 7.89 -2.38 -0.02 0.02 16 13 C -0.60 -31.90 8.49 25.60 0.22 -31.68 16 14 H 0.05 2.75 7.77 -2.91 -0.02 2.73 16 15 C -0.03 -1.41 5.37 84.65 0.45 -0.95 16 16 N -0.94 -54.74 13.51 21.45 0.29 -54.45 16 17 Si 1.11 48.08 29.90 68.60 2.05 50.13 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 20 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 21 C 0.14 5.67 6.55 86.86 0.57 6.24 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.08 1.68 7.50 -2.39 -0.02 1.67 16 26 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.05 1.16 5.87 -2.39 -0.01 1.15 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.42 7.64 8.84 -96.76 -0.85 6.79 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.09 2.36 6.78 -2.39 -0.02 2.35 16 32 H 0.06 2.68 8.03 -2.39 -0.02 2.67 16 33 H 0.05 2.32 6.86 -2.39 -0.02 2.30 16 34 H 0.26 15.32 5.69 -92.71 -0.53 14.79 16 35 H 0.06 2.39 7.78 -2.39 -0.02 2.37 16 36 H 0.07 2.64 8.01 -2.39 -0.02 2.62 16 Total: -1.00 -67.97 302.11 -1.16 -69.13 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.46 Total: 13.78 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 3.49 Total: -26.40 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -2.38 Total: -117.47 kcal Atomic # 8 Polarization: -74.74 SS G_CDS: -4.42 Total: -79.16 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 2.05 Total: 50.13 kcal Atomic # 16 Polarization: 90.35 SS G_CDS: -0.36 Total: 89.99 kcal Total: -67.97 -1.16 -69.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651388.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.178 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds