Wall clock time and date at job start Mon Mar 30 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.62630 * 2 1 4 4 C 1.53233 * 109.79102 * 120.48862 * 2 1 3 5 5 N 1.46894 * 109.36471 * 173.62307 * 4 2 1 6 6 C 1.46910 * 111.26957 * 296.93705 * 5 4 2 7 7 H 1.09001 * 109.49272 * 183.03682 * 6 5 4 8 8 C 1.53002 * 109.48967 * 303.08710 * 6 5 4 9 9 C 1.53231 * 109.36208 * 63.06047 * 6 5 4 10 10 H 1.09003 * 109.62985 * 186.47788 * 9 6 5 11 11 C 1.53003 * 109.62979 * 66.09110 * 9 6 5 12 12 N 1.47084 * 109.62529 * 239.61684 * 2 1 3 13 13 S 1.65595 * 120.88262 * 8.88580 * 12 2 1 14 14 O 1.42103 * 106.39987 * 189.46825 * 13 12 2 15 15 O 1.42092 * 106.40398 * 322.38935 * 13 12 2 16 16 C 1.76198 * 107.21953 * 75.93243 * 13 12 2 17 17 H 1.08003 * 119.99922 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00238 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99795 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00028 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47345 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47193 * 120.00505 * 20 18 16 23 23 H 1.48506 * 109.47433 * 240.00363 * 20 18 16 24 24 H 1.09005 * 109.47312 * 187.70236 * 1 2 3 25 25 H 1.08996 * 109.47040 * 307.70315 * 1 2 3 26 26 H 1.09005 * 109.47573 * 67.70743 * 1 2 3 27 27 H 1.08994 * 109.49589 * 293.59385 * 4 2 1 28 28 H 1.09003 * 109.49189 * 53.64882 * 4 2 1 29 29 H 1.00900 * 111.02591 * 172.77299 * 5 4 2 30 30 H 1.09003 * 109.46898 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.47646 * 299.94784 * 8 6 5 32 32 H 1.09006 * 109.47146 * 59.94796 * 8 6 5 33 33 H 1.08994 * 109.47299 * 59.99721 * 11 9 6 34 34 H 1.08997 * 109.47381 * 180.02562 * 11 9 6 35 35 H 1.09000 * 109.46807 * 299.99732 * 11 9 6 36 36 H 0.96996 * 119.99356 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0488 -0.7315 1.2425 5 7 3.5096 -0.8601 1.1574 6 6 3.9063 -1.6805 0.0051 7 1 4.9895 -1.8016 0.0005 8 6 3.2394 -3.0541 0.1027 9 6 3.4635 -0.9879 -1.2880 10 1 3.6518 -1.6440 -2.1379 11 6 4.2418 0.3176 -1.4643 12 7 2.0240 -0.7007 -1.1951 13 16 0.9869 -1.1548 -2.4036 14 8 1.7329 -1.9877 -3.2806 15 8 -0.2125 -1.5733 -1.7670 16 6 0.5844 0.2964 -3.3183 17 1 1.0078 1.2485 -3.0342 18 6 -0.2710 0.2166 -4.3966 19 7 -0.7869 -0.9427 -4.7423 20 14 -0.6982 1.7553 -5.3658 21 1 0.0072 2.9224 -4.7780 22 1 -0.2765 1.5831 -6.7792 23 1 -2.1645 1.9837 -5.3111 24 1 -0.3634 -1.0184 0.1377 25 1 -0.3633 0.6285 0.8131 26 1 -0.3634 0.3898 -0.9509 27 1 1.7850 -0.1645 2.1351 28 1 1.5989 -1.7230 1.2952 29 1 3.8908 -1.2321 2.0144 30 1 3.5335 -3.6624 -0.7526 31 1 3.5538 -3.5461 1.0232 32 1 2.1561 -2.9326 0.1074 33 1 5.3086 0.1003 -1.5171 34 1 3.9247 0.8082 -2.3845 35 1 4.0462 0.9744 -0.6168 36 1 -1.3890 -0.9987 -5.5007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401207103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:04 Heat of formation + Delta-G solvation = -80.716149 kcal Electronic energy + Delta-G solvation = -20002.443394 eV Core-core repulsion = 17034.192076 eV Total energy + Delta-G solvation = -2968.251319 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.11672 -35.60531 -33.98085 -33.66633 -33.06385 -32.72907 -28.94590 -27.93380 -26.15903 -25.02886 -22.89190 -21.70224 -19.13543 -18.31679 -17.15233 -16.41037 -15.50979 -15.39377 -14.80279 -14.58633 -14.12698 -13.72857 -13.55781 -13.15020 -13.06347 -12.38730 -12.02734 -11.96106 -11.64353 -11.52998 -11.42645 -11.21653 -11.20078 -11.09984 -10.73951 -10.59919 -10.48242 -10.39054 -10.11203 -10.00166 -9.28461 -9.18149 -8.85627 -8.45235 -7.89880 -6.67837 -5.28713 2.31488 3.05938 3.14516 3.22217 4.06541 4.39272 4.50788 4.65528 5.12144 5.27051 5.37341 5.45295 5.60287 5.66357 5.79745 5.86486 5.89389 5.93875 6.05160 6.10447 6.14601 6.19988 6.28405 6.45105 6.51643 6.58027 6.71267 6.78524 6.97802 7.18268 7.28380 7.35311 7.58318 7.71489 8.01838 8.91396 10.25307 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.008337 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.414538 B = 3357.719907 C = 3374.707030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.166 3.834 3 H 0.068 0.932 4 C 0.046 3.954 5 N -0.678 5.678 6 C 0.078 3.922 7 H 0.086 0.914 8 C -0.191 4.191 9 C 0.154 3.846 10 H 0.101 0.899 11 C -0.153 4.153 12 N -1.004 6.004 13 S 2.717 3.283 14 O -1.009 7.009 15 O -1.002 7.002 16 C -1.019 5.019 17 H 0.102 0.898 18 C 0.133 3.867 19 N -0.847 5.847 20 Si 0.917 3.083 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.335 0.665 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.007 1.666 9.599 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.059 3.941 3 H 0.086 0.914 4 C -0.085 4.085 5 N -0.308 5.308 6 C -0.033 4.033 7 H 0.104 0.896 8 C -0.250 4.250 9 C 0.047 3.953 10 H 0.119 0.881 11 C -0.212 4.212 12 N -0.839 5.839 13 S 2.819 3.181 14 O -1.000 7.000 15 O -0.992 6.992 16 C -1.152 5.152 17 H 0.120 0.880 18 C -0.084 4.084 19 N -0.476 5.476 20 Si 0.741 3.259 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.059 0.941 29 H 0.152 0.848 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.667 1.245 9.004 11.273 hybrid contribution -0.439 0.528 -0.343 0.768 sum 6.228 1.774 8.661 10.815 Atomic orbital electron populations 1.22650 0.92971 1.04860 1.03656 1.20769 0.94026 0.95428 0.83921 0.91376 1.22394 0.87841 0.99772 0.98488 1.60413 1.10929 1.53820 1.05649 1.21893 0.99067 0.90499 0.91882 0.89620 1.22532 1.02700 0.98069 1.01694 1.20914 0.80856 0.96724 0.96801 0.88072 1.22013 0.98716 0.98036 1.02405 1.58326 1.17284 1.74370 1.33951 1.00432 0.71320 0.75296 0.71052 1.93318 1.72975 1.69045 1.64634 1.93390 1.46230 1.83587 1.76013 1.30672 1.40487 1.16067 1.27965 0.87953 1.24740 0.91325 0.97666 0.94713 1.69907 1.26720 1.24826 1.26195 0.86182 0.78778 0.81625 0.79308 1.18557 1.19644 1.19621 0.89169 0.92767 0.89662 0.90653 0.94100 0.84765 0.91709 0.93096 0.91717 0.92777 0.92421 0.91507 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 7.62 37.16 0.28 -3.20 16 2 C 0.17 2.94 3.27 -67.49 -0.22 2.72 16 3 H 0.07 1.15 7.62 -51.93 -0.40 0.76 16 4 C 0.05 0.66 5.63 -3.71 -0.02 0.64 16 5 N -0.68 -8.94 6.15 -106.46 -0.65 -9.60 16 6 C 0.08 1.13 3.08 -67.59 -0.21 0.92 16 7 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 8 C -0.19 -2.85 8.77 37.16 0.33 -2.52 16 9 C 0.15 2.76 2.69 -67.49 -0.18 2.58 16 10 H 0.10 1.97 6.73 -51.93 -0.35 1.63 16 11 C -0.15 -2.42 9.22 37.16 0.34 -2.08 16 12 N -1.00 -20.61 2.50 -99.23 -0.25 -20.85 16 13 S 2.72 71.98 4.44 -107.50 -0.48 71.50 16 14 O -1.01 -29.53 16.39 -57.17 -0.94 -30.46 16 15 O -1.00 -28.18 13.62 -57.17 -0.78 -28.96 16 16 C -1.02 -28.09 8.74 30.60 0.27 -27.82 16 17 H 0.10 2.63 7.81 -52.48 -0.41 2.22 16 18 C 0.13 3.72 5.46 -17.82 -0.10 3.62 16 19 N -0.85 -24.94 13.19 55.43 0.73 -24.20 16 20 Si 0.92 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H 0.09 1.86 6.52 -51.93 -0.34 1.52 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.88 5.68 -51.93 -0.29 1.59 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.63 6.09 -51.93 -0.32 0.31 16 29 H 0.34 3.57 8.90 -39.29 -0.35 3.22 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.12 5.93 -51.93 -0.31 0.81 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.03 7.09 -51.93 -0.37 0.66 16 36 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 289.32 15.07 4.36 4.36 Total: -1.00 -33.05 289.32 -7.76 -40.81 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.23 Total: 6.87 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 0.49 Total: -25.13 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.17 Total: -54.66 kcal Atomic # 8 Polarization: -57.71 SS G_CDS: -1.72 Total: -59.42 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 71.98 SS G_CDS: -0.48 Total: 71.50 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.05 -7.76 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401207103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.908 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds