Wall clock time and date at job start Mon Mar 30 2020 05:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.62630 * 2 1 4 4 C 1.53233 * 109.79102 * 120.48862 * 2 1 3 5 5 N 1.46894 * 109.36471 * 173.62307 * 4 2 1 6 6 C 1.46910 * 111.26957 * 296.93705 * 5 4 2 7 7 H 1.09001 * 109.49272 * 183.03682 * 6 5 4 8 8 C 1.53002 * 109.48967 * 303.08710 * 6 5 4 9 9 C 1.53231 * 109.36208 * 63.06047 * 6 5 4 10 10 H 1.09003 * 109.62985 * 186.47788 * 9 6 5 11 11 C 1.53003 * 109.62979 * 66.09110 * 9 6 5 12 12 N 1.47084 * 109.62529 * 239.61684 * 2 1 3 13 13 S 1.65595 * 120.88262 * 8.88580 * 12 2 1 14 14 O 1.42103 * 106.39987 * 189.46825 * 13 12 2 15 15 O 1.42092 * 106.40398 * 322.38935 * 13 12 2 16 16 C 1.76198 * 107.21953 * 75.93243 * 13 12 2 17 17 H 1.08003 * 119.99922 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00238 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99795 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00028 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47345 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47193 * 120.00505 * 20 18 16 23 23 H 1.48506 * 109.47433 * 240.00363 * 20 18 16 24 24 H 1.09005 * 109.47312 * 187.70236 * 1 2 3 25 25 H 1.08996 * 109.47040 * 307.70315 * 1 2 3 26 26 H 1.09005 * 109.47573 * 67.70743 * 1 2 3 27 27 H 1.08994 * 109.49589 * 293.59385 * 4 2 1 28 28 H 1.09003 * 109.49189 * 53.64882 * 4 2 1 29 29 H 1.00900 * 111.02591 * 172.77299 * 5 4 2 30 30 H 1.09003 * 109.46898 * 179.97438 * 8 6 5 31 31 H 1.09000 * 109.47646 * 299.94784 * 8 6 5 32 32 H 1.09006 * 109.47146 * 59.94796 * 8 6 5 33 33 H 1.08994 * 109.47299 * 59.99721 * 11 9 6 34 34 H 1.08997 * 109.47381 * 180.02562 * 11 9 6 35 35 H 1.09000 * 109.46807 * 299.99732 * 11 9 6 36 36 H 0.96996 * 119.99356 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0488 -0.7315 1.2425 5 7 3.5096 -0.8601 1.1574 6 6 3.9063 -1.6805 0.0051 7 1 4.9895 -1.8016 0.0005 8 6 3.2394 -3.0541 0.1027 9 6 3.4635 -0.9879 -1.2880 10 1 3.6518 -1.6440 -2.1379 11 6 4.2418 0.3176 -1.4643 12 7 2.0240 -0.7007 -1.1951 13 16 0.9869 -1.1548 -2.4036 14 8 1.7329 -1.9877 -3.2806 15 8 -0.2125 -1.5733 -1.7670 16 6 0.5844 0.2964 -3.3183 17 1 1.0078 1.2485 -3.0342 18 6 -0.2710 0.2166 -4.3966 19 7 -0.7869 -0.9427 -4.7423 20 14 -0.6982 1.7553 -5.3658 21 1 0.0072 2.9224 -4.7780 22 1 -0.2765 1.5831 -6.7792 23 1 -2.1645 1.9837 -5.3111 24 1 -0.3634 -1.0184 0.1377 25 1 -0.3633 0.6285 0.8131 26 1 -0.3634 0.3898 -0.9509 27 1 1.7850 -0.1645 2.1351 28 1 1.5989 -1.7230 1.2952 29 1 3.8908 -1.2321 2.0144 30 1 3.5335 -3.6624 -0.7526 31 1 3.5538 -3.5461 1.0232 32 1 2.1561 -2.9326 0.1074 33 1 5.3086 0.1003 -1.5171 34 1 3.9247 0.8082 -2.3845 35 1 4.0462 0.9744 -0.6168 36 1 -1.3890 -0.9987 -5.5007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401207103.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:04 Heat of formation + Delta-G solvation = -107.754461 kcal Electronic energy + Delta-G solvation = -20003.615863 eV Core-core repulsion = 17034.192076 eV Total energy + Delta-G solvation = -2969.423788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42769 -37.67903 -36.12049 -35.24500 -35.03457 -34.10607 -30.16738 -29.42449 -28.28775 -26.31539 -24.20854 -23.11822 -20.93155 -20.04866 -18.79571 -18.20692 -17.25709 -16.99329 -16.35269 -16.15169 -15.80159 -15.40874 -14.97208 -14.71346 -14.37329 -13.98809 -13.90344 -13.37054 -13.21049 -13.15682 -13.00461 -12.89754 -12.82469 -12.50320 -12.37521 -12.29074 -12.19484 -11.89260 -11.74427 -11.71878 -11.28188 -10.97416 -10.85569 -9.86650 -9.20025 -8.74118 -7.47091 0.35782 1.29599 1.30713 1.48350 2.18629 2.56341 2.81215 3.29873 3.73219 3.84281 4.00759 4.08834 4.16657 4.25398 4.38781 4.47726 4.52225 4.66193 4.74191 4.79286 4.85807 4.90512 4.91669 4.95790 5.17254 5.20052 5.25285 5.29688 5.43324 5.54135 5.67465 5.91847 6.04502 6.12703 6.65416 6.77818 8.19833 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.008337 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.414538 B = 3357.719907 C = 3374.707030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.158 3.842 3 H 0.083 0.917 4 C 0.052 3.948 5 N -0.668 5.668 6 C 0.086 3.914 7 H 0.120 0.880 8 C -0.192 4.192 9 C 0.139 3.861 10 H 0.074 0.926 11 C -0.146 4.146 12 N -0.999 5.999 13 S 2.719 3.281 14 O -1.050 7.050 15 O -1.031 7.031 16 C -1.037 5.037 17 H 0.113 0.887 18 C 0.070 3.930 19 N -0.895 5.895 20 Si 0.985 3.015 21 H -0.248 1.248 22 H -0.260 1.260 23 H -0.257 1.257 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.110 0.890 28 H 0.030 0.970 29 H 0.358 0.642 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 3.533 11.389 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.053 3.947 3 H 0.101 0.899 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.026 4.026 7 H 0.137 0.863 8 C -0.251 4.251 9 C 0.033 3.967 10 H 0.092 0.908 11 C -0.204 4.204 12 N -0.838 5.838 13 S 2.822 3.178 14 O -1.040 7.040 15 O -1.021 7.021 16 C -1.170 5.170 17 H 0.131 0.869 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.804 3.196 21 H -0.171 1.171 22 H -0.184 1.184 23 H -0.181 1.181 24 H 0.085 0.915 25 H 0.113 0.887 26 H 0.067 0.933 27 H 0.128 0.872 28 H 0.048 0.952 29 H 0.178 0.822 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.203 3.096 10.818 13.925 hybrid contribution -0.872 -0.084 -0.817 1.198 sum 7.331 3.012 10.001 12.761 Atomic orbital electron populations 1.22550 0.94308 1.03994 1.03155 1.21063 0.93148 0.96439 0.84093 0.89869 1.22318 0.88625 0.99280 0.97712 1.60343 1.09899 1.53472 1.06254 1.21847 1.00694 0.89524 0.90541 0.86256 1.22556 1.00760 0.98876 1.02885 1.21242 0.79353 0.97933 0.98179 0.90756 1.21969 1.00130 0.96673 1.01669 1.57872 1.17922 1.74636 1.33403 0.99990 0.71241 0.75115 0.71426 1.93251 1.73717 1.70397 1.66643 1.93357 1.48140 1.84223 1.76410 1.31016 1.40665 1.16821 1.28546 0.86879 1.25982 0.90927 1.01391 0.95886 1.69998 1.27912 1.27437 1.27375 0.85172 0.79342 0.77175 0.77949 1.17073 1.18394 1.18144 0.91502 0.88691 0.93350 0.87216 0.95223 0.82225 0.92886 0.89862 0.94817 0.89715 0.94545 0.90536 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.89 7.62 71.98 0.55 -6.34 16 2 C 0.16 5.42 3.27 44.96 0.15 5.57 16 3 H 0.08 2.61 7.62 -2.39 -0.02 2.59 16 4 C 0.05 1.35 5.63 86.38 0.49 1.83 16 5 N -0.67 -14.96 6.15 -490.75 -3.02 -17.97 16 6 C 0.09 2.25 3.08 44.99 0.14 2.39 16 7 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 8 C -0.19 -5.50 8.77 71.98 0.63 -4.86 16 9 C 0.14 4.89 2.69 44.96 0.12 5.01 16 10 H 0.07 2.99 6.73 -2.39 -0.02 2.97 16 11 C -0.15 -4.32 9.22 71.98 0.66 -3.66 16 12 N -1.00 -41.33 2.50 -467.86 -1.17 -42.50 16 13 S 2.72 150.32 4.44 -56.49 -0.25 150.06 16 14 O -1.05 -64.75 16.39 -128.00 -2.10 -66.85 16 15 O -1.03 -61.11 13.62 -128.00 -1.74 -62.86 16 16 C -1.04 -58.75 8.74 67.73 0.59 -58.16 16 17 H 0.11 5.90 7.81 -2.91 -0.02 5.88 16 18 C 0.07 4.01 5.46 84.65 0.46 4.48 16 19 N -0.90 -54.61 13.19 21.45 0.28 -54.33 16 20 Si 0.99 42.31 29.54 68.60 2.03 44.34 16 21 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 H 0.07 2.83 6.52 -2.38 -0.02 2.82 16 25 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.05 2.19 5.68 -2.38 -0.01 2.17 16 27 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.03 0.86 6.09 -2.39 -0.01 0.85 16 29 H 0.36 5.80 8.90 -89.69 -0.80 5.00 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.03 1.17 5.93 -2.38 -0.01 1.15 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 2.12 7.09 -2.39 -0.02 2.10 16 36 H 0.30 16.27 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -75.91 289.32 -1.89 -77.80 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.28 Total: 26.06 kcal Atomic # 6 Polarization: -57.55 SS G_CDS: 3.79 Total: -53.76 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -3.90 Total: -114.80 kcal Atomic # 8 Polarization: -125.86 SS G_CDS: -3.84 Total: -129.70 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 150.32 SS G_CDS: -0.25 Total: 150.06 kcal Total: -75.91 -1.89 -77.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401207103.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.956 kcal (2) G-P(sol) polarization free energy of solvation -75.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds