Wall clock time and date at job start Mon Mar 30 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 N 1.46494 * 109.52323 * 177.55517 * 5 4 3 7 7 S 1.65607 * 119.99662 * 95.31698 * 6 5 4 8 8 O 1.42096 * 104.27730 * 181.07033 * 7 6 5 9 9 O 1.42099 * 104.27829 * 308.92945 * 7 6 5 10 10 C 1.81401 * 104.44720 * 65.00117 * 7 6 5 11 11 C 1.50702 * 109.46779 * 180.02562 * 10 7 6 12 12 H 1.07999 * 120.00521 * 359.97438 * 11 10 7 13 13 C 1.37882 * 119.99618 * 179.97438 * 11 10 7 14 14 N 1.31508 * 120.00209 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99913 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47064 * 59.99819 * 15 13 11 17 17 H 1.48489 * 109.47219 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47240 * 300.00197 * 15 13 11 19 19 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 20 20 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 21 21 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 22 22 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 23 23 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 24 24 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 25 25 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 26 26 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 27 27 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 28 28 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 29 29 H 0.97002 * 120.00374 * 275.31669 * 6 5 4 30 30 H 1.08996 * 109.47167 * 299.99748 * 10 7 6 31 31 H 1.08998 * 109.47268 * 60.00131 * 10 7 6 32 32 H 0.97003 * 120.00459 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.50326 * 182.41022 * 19 5 4 34 34 H 1.08994 * 109.50594 * 62.28334 * 19 5 4 35 35 H 1.09005 * 109.46673 * 294.18102 * 20 2 1 36 36 H 1.09003 * 109.46587 * 54.14643 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 7 5.5716 0.4489 0.8481 7 16 6.5601 1.5355 1.6128 8 8 7.8700 1.1638 1.2065 9 8 6.0187 2.8037 1.2695 10 6 6.3219 1.1987 3.3793 11 6 7.1793 2.1365 4.1895 12 1 7.8052 2.8623 3.6916 13 6 7.1646 2.0680 5.5665 14 7 6.4021 1.1847 6.1729 15 14 8.2279 3.2301 6.5708 16 1 7.8411 4.6335 6.2772 17 1 8.0319 2.9553 8.0168 18 1 9.6555 3.0257 6.2166 19 6 3.5182 -0.8715 1.0210 20 6 1.9952 -0.7707 1.1338 21 1 -0.3634 0.4471 0.9253 22 1 -0.3633 -1.0249 -0.0754 23 1 -0.3633 0.5778 -0.8499 24 1 1.5634 1.9257 -0.8330 25 1 1.7324 1.8608 0.9376 26 1 3.9099 2.3512 -0.1310 27 1 3.7820 0.8572 -1.0905 28 1 3.8886 1.0355 1.9561 29 1 5.9546 -0.2460 0.2899 30 1 5.2741 1.3484 3.6397 31 1 6.6061 0.1686 3.5943 32 1 6.3920 1.1362 7.1416 33 1 3.9098 -1.4302 1.8710 34 1 3.7813 -1.3836 0.0955 35 1 1.7324 -0.2708 2.0661 36 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408193143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:55 Heat of formation + Delta-G solvation = -84.307346 kcal Electronic energy + Delta-G solvation = -18577.972595 eV Core-core repulsion = 15609.565550 eV Total energy + Delta-G solvation = -2968.407045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.10884 -36.12206 -35.26002 -34.92378 -33.36018 -30.86007 -30.79906 -29.03397 -25.99594 -23.53942 -23.12259 -22.44605 -19.97582 -18.63983 -17.20361 -16.49020 -16.16921 -15.40173 -15.25690 -15.09996 -14.61832 -14.34250 -14.18325 -13.72242 -13.29561 -12.55032 -12.47807 -12.43307 -12.09746 -11.87735 -11.64126 -11.45055 -11.19880 -11.14086 -11.06475 -11.00292 -10.88816 -10.81422 -10.63325 -10.25624 -9.86358 -9.43465 -8.77367 -8.71404 -8.41220 -6.34708 -4.45326 1.35329 3.22784 3.24980 3.29867 3.60422 3.87323 4.22942 4.70515 4.80555 4.89495 4.97921 5.03162 5.11723 5.27660 5.32544 5.34442 5.47525 5.49686 5.58907 5.65684 5.72253 5.81870 5.99728 6.01513 6.16178 6.37637 6.51580 6.64632 6.78716 6.97381 7.01405 7.42962 7.47838 7.74018 8.56727 9.22474 10.77058 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.005610 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.834543 B = 4989.840477 C = 5486.064971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.056 3.944 4 C -0.134 4.134 5 C 0.156 3.844 6 N -1.126 6.126 7 S 2.582 3.418 8 O -0.983 6.983 9 O -0.980 6.980 10 C -0.420 4.420 11 C -0.535 4.535 12 H 0.069 0.931 13 C 0.077 3.923 14 N -0.880 5.880 15 Si 0.904 3.096 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.122 4.122 20 C 0.056 3.944 21 H 0.025 0.975 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.408 0.592 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.269 0.731 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 -4.459 -9.120 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.174 4.174 5 C 0.048 3.952 6 N -0.880 5.880 7 S 2.683 3.317 8 O -0.974 6.974 9 O -0.970 6.970 10 C -0.556 4.556 11 C -0.574 4.574 12 H 0.087 0.913 13 C -0.130 4.130 14 N -0.516 5.516 15 Si 0.730 3.270 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.194 1.194 19 C -0.162 4.162 20 C -0.073 4.073 21 H 0.043 0.957 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.240 0.760 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.061 -3.968 -9.744 14.557 hybrid contribution -0.007 0.194 1.610 1.621 sum -10.068 -3.773 -8.134 13.482 Atomic orbital electron populations 1.22340 0.87517 1.02026 1.00457 1.61978 1.07382 1.14189 1.43511 1.22112 0.95597 0.88734 1.00833 1.22152 0.93712 1.02079 0.99449 1.20693 0.79692 0.96296 0.98567 1.55930 1.15661 1.50794 1.65604 1.05857 0.72911 0.73635 0.79346 1.93483 1.37862 1.83319 1.82702 1.93469 1.79172 1.40837 1.83560 1.27724 1.06431 1.06816 1.14592 1.20296 1.26540 1.18648 0.91949 0.91314 1.24922 0.95113 0.95428 0.97493 1.69937 1.37710 1.33985 1.09927 0.86440 0.80898 0.81093 0.78600 1.19420 1.20714 1.19389 1.21915 0.94177 0.96753 1.03327 1.22088 0.95224 0.98347 0.91626 0.95659 0.91505 0.91496 0.90572 0.94435 0.89627 0.90833 0.89944 0.75960 0.90058 0.89667 0.92178 0.90373 0.90562 0.94350 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.59 60.07 0.58 0.80 16 2 N -0.55 -6.15 4.91 -242.95 -1.19 -7.34 16 3 C 0.06 0.67 5.46 -3.83 -0.02 0.64 16 4 C -0.13 -1.85 5.70 -26.65 -0.15 -2.00 16 5 C 0.16 2.27 2.62 -67.81 -0.18 2.09 16 6 N -1.13 -18.04 5.37 -4.79 -0.03 -18.07 16 7 S 2.58 54.64 5.30 -107.50 -0.57 54.07 16 8 O -0.98 -23.40 18.08 -57.54 -1.04 -24.44 16 9 O -0.98 -22.85 17.20 -57.54 -0.99 -23.84 16 10 C -0.42 -10.06 5.72 36.01 0.21 -9.85 16 11 C -0.54 -14.77 9.13 -34.44 -0.31 -15.08 16 12 H 0.07 1.87 7.71 -52.49 -0.40 1.46 16 13 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 14 N -0.88 -24.71 13.29 55.43 0.74 -23.98 16 15 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C -0.12 -1.47 5.63 -26.65 -0.15 -1.62 16 20 C 0.06 0.62 5.46 -3.83 -0.02 0.60 16 21 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 24 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 1.32 7.51 -51.93 -0.39 0.93 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.28 7.16 -51.93 -0.37 0.91 16 29 H 0.41 5.62 8.80 -34.48 -0.30 5.32 16 30 H 0.08 1.92 7.45 -51.93 -0.39 1.53 16 31 H 0.09 2.03 8.14 -51.92 -0.42 1.61 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -32.81 306.15 -9.28 -42.08 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.64 Total: 3.41 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -0.15 Total: -22.42 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.48 Total: -49.38 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -2.03 Total: -48.28 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 54.64 SS G_CDS: -0.57 Total: 54.07 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.81 -9.28 -42.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408193143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.226 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds