Wall clock time and date at job start Mon Mar 30 2020 05:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 N 1.46494 * 109.52323 * 177.55517 * 5 4 3 7 7 S 1.65607 * 119.99662 * 95.31698 * 6 5 4 8 8 O 1.42096 * 104.27730 * 181.07033 * 7 6 5 9 9 O 1.42099 * 104.27829 * 308.92945 * 7 6 5 10 10 C 1.81401 * 104.44720 * 65.00117 * 7 6 5 11 11 C 1.50702 * 109.46779 * 180.02562 * 10 7 6 12 12 H 1.07999 * 120.00521 * 359.97438 * 11 10 7 13 13 C 1.37882 * 119.99618 * 179.97438 * 11 10 7 14 14 N 1.31508 * 120.00209 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99913 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47064 * 59.99819 * 15 13 11 17 17 H 1.48489 * 109.47219 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47240 * 300.00197 * 15 13 11 19 19 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 20 20 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 21 21 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 22 22 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 23 23 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 24 24 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 25 25 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 26 26 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 27 27 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 28 28 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 29 29 H 0.97002 * 120.00374 * 275.31669 * 6 5 4 30 30 H 1.08996 * 109.47167 * 299.99748 * 10 7 6 31 31 H 1.08998 * 109.47268 * 60.00131 * 10 7 6 32 32 H 0.97003 * 120.00459 * 179.97438 * 14 13 11 33 33 H 1.09001 * 109.50326 * 182.41022 * 19 5 4 34 34 H 1.08994 * 109.50594 * 62.28334 * 19 5 4 35 35 H 1.09005 * 109.46673 * 294.18102 * 20 2 1 36 36 H 1.09003 * 109.46587 * 54.14643 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 7 5.5716 0.4489 0.8481 7 16 6.5601 1.5355 1.6128 8 8 7.8700 1.1638 1.2065 9 8 6.0187 2.8037 1.2695 10 6 6.3219 1.1987 3.3793 11 6 7.1793 2.1365 4.1895 12 1 7.8052 2.8623 3.6916 13 6 7.1646 2.0680 5.5665 14 7 6.4021 1.1847 6.1729 15 14 8.2279 3.2301 6.5708 16 1 7.8411 4.6335 6.2772 17 1 8.0319 2.9553 8.0168 18 1 9.6555 3.0257 6.2166 19 6 3.5182 -0.8715 1.0210 20 6 1.9952 -0.7707 1.1338 21 1 -0.3634 0.4471 0.9253 22 1 -0.3633 -1.0249 -0.0754 23 1 -0.3633 0.5778 -0.8499 24 1 1.5634 1.9257 -0.8330 25 1 1.7324 1.8608 0.9376 26 1 3.9099 2.3512 -0.1310 27 1 3.7820 0.8572 -1.0905 28 1 3.8886 1.0355 1.9561 29 1 5.9546 -0.2460 0.2899 30 1 5.2741 1.3484 3.6397 31 1 6.6061 0.1686 3.5943 32 1 6.3920 1.1362 7.1416 33 1 3.9098 -1.4302 1.8710 34 1 3.7813 -1.3836 0.0955 35 1 1.7324 -0.2708 2.0661 36 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408193143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:54 Heat of formation + Delta-G solvation = -110.484427 kcal Electronic energy + Delta-G solvation = -18579.107718 eV Core-core repulsion = 15609.565550 eV Total energy + Delta-G solvation = -2969.542168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.10742 -37.94557 -36.84527 -36.35358 -35.41407 -31.95719 -31.80975 -31.03937 -26.90524 -25.57332 -24.10093 -23.45553 -21.08840 -20.24201 -19.09959 -18.05990 -17.69471 -17.23437 -16.51029 -16.16443 -15.99909 -15.75554 -15.43191 -14.80404 -14.55517 -14.39879 -14.06556 -13.45909 -13.34757 -13.30439 -13.10538 -13.03146 -12.94340 -12.73109 -12.69377 -12.52255 -12.13791 -12.09094 -11.87295 -11.81608 -11.45936 -11.10809 -10.78318 -10.23272 -9.27999 -8.42113 -6.60236 -0.40637 1.37571 1.40471 1.48678 2.03303 2.31451 2.91740 3.00191 3.02306 3.49789 3.72139 3.88843 4.02050 4.20518 4.24969 4.40952 4.54511 4.59511 4.63132 4.73939 4.75597 4.78694 4.91667 4.93433 5.03286 5.07268 5.17708 5.27467 5.32356 5.43163 5.71711 6.11224 6.14425 6.24167 6.50019 7.11473 8.70206 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.005610 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.834543 B = 4989.840477 C = 5486.064971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.058 3.942 4 C -0.132 4.132 5 C 0.145 3.855 6 N -1.108 6.108 7 S 2.620 3.380 8 O -1.008 7.008 9 O -1.001 7.001 10 C -0.432 4.432 11 C -0.569 4.569 12 H 0.063 0.937 13 C 0.027 3.973 14 N -0.907 5.907 15 Si 0.961 3.039 16 H -0.263 1.263 17 H -0.269 1.269 18 H -0.263 1.263 19 C -0.117 4.117 20 C 0.055 3.945 21 H 0.024 0.976 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.029 0.971 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.423 0.577 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.274 0.726 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.030 0.970 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -4.944 -9.702 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.276 5.276 3 C -0.071 4.071 4 C -0.172 4.172 5 C 0.038 3.962 6 N -0.867 5.867 7 S 2.718 3.282 8 O -0.998 6.998 9 O -0.990 6.990 10 C -0.566 4.566 11 C -0.608 4.608 12 H 0.082 0.918 13 C -0.176 4.176 14 N -0.544 5.544 15 Si 0.783 3.217 16 H -0.188 1.188 17 H -0.193 1.193 18 H -0.187 1.187 19 C -0.156 4.156 20 C -0.073 4.073 21 H 0.042 0.958 22 H 0.099 0.901 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.258 0.742 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.819 -4.464 -10.319 15.603 hybrid contribution 0.154 0.297 1.728 1.760 sum -10.665 -4.167 -8.591 14.315 Atomic orbital electron populations 1.22417 0.85973 1.03152 1.00862 1.62004 1.08791 1.13401 1.43374 1.22074 0.94269 0.89617 1.01105 1.22098 0.95090 1.00658 0.99330 1.20955 0.78436 0.98380 0.98429 1.55431 1.16102 1.50413 1.64744 1.04467 0.72399 0.73502 0.77785 1.93439 1.39953 1.83836 1.82576 1.93441 1.79598 1.42685 1.83322 1.27786 1.05593 1.05828 1.17401 1.20735 1.27401 1.19539 0.93139 0.91838 1.25805 0.96282 0.96952 0.98577 1.70010 1.38730 1.35159 1.10468 0.85551 0.79331 0.79186 0.77592 1.18759 1.19322 1.18740 1.21891 0.94841 0.94760 1.04114 1.22129 0.94455 0.99407 0.91351 0.95755 0.90143 0.90506 0.89052 0.95241 0.91752 0.89904 0.91420 0.74176 0.90390 0.90152 0.91715 0.90164 0.89270 0.95156 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.59 127.69 1.22 1.59 16 2 N -0.55 -11.15 4.91 -922.54 -4.53 -15.68 16 3 C 0.06 1.30 5.46 86.33 0.47 1.77 16 4 C -0.13 -3.51 5.70 30.65 0.17 -3.34 16 5 C 0.15 4.13 2.62 45.07 0.12 4.25 16 6 N -1.11 -34.75 5.37 -169.06 -0.91 -35.65 16 7 S 2.62 111.53 5.30 -56.49 -0.30 111.23 16 8 O -1.01 -47.91 18.08 -127.65 -2.31 -50.22 16 9 O -1.00 -47.00 17.20 -127.65 -2.19 -49.20 16 10 C -0.43 -21.16 5.72 71.24 0.41 -20.76 16 11 C -0.57 -31.96 9.13 25.60 0.23 -31.72 16 12 H 0.06 3.51 7.71 -2.91 -0.02 3.49 16 13 C 0.03 1.50 5.46 84.66 0.46 1.97 16 14 N -0.91 -51.35 13.29 21.45 0.28 -51.06 16 15 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 19 C -0.12 -2.60 5.63 30.65 0.17 -2.43 16 20 C 0.06 1.11 5.46 86.33 0.47 1.59 16 21 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 22 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.08 1.04 8.09 -2.38 -0.02 1.02 16 24 H 0.09 1.77 8.09 -2.38 -0.02 1.75 16 25 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.06 1.98 7.51 -2.39 -0.02 1.96 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.07 2.13 7.16 -2.39 -0.02 2.12 16 29 H 0.42 11.02 8.80 -96.74 -0.85 10.17 16 30 H 0.08 3.79 7.45 -2.39 -0.02 3.78 16 31 H 0.08 3.93 8.14 -2.39 -0.02 3.91 16 32 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.10 1.59 8.12 -2.39 -0.02 1.57 16 Total: -1.00 -69.15 306.15 -3.98 -73.13 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.21 Total: 19.89 kcal Atomic # 6 Polarization: -50.81 SS G_CDS: 3.74 Total: -47.07 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -5.15 Total: -102.40 kcal Atomic # 8 Polarization: -94.91 SS G_CDS: -4.50 Total: -99.41 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 111.53 SS G_CDS: -0.30 Total: 111.23 kcal Total: -69.15 -3.98 -73.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408193143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.353 kcal (2) G-P(sol) polarization free energy of solvation -69.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds